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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

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Disease Browser
Parent Node: Mental Retardation, X-Linked (D038901)
..Starting node ..Mental Retardation, X-Linked 3 (C563136)
Child Nodes:
Sister Nodes:
..Abidi X-linked mental retardation syndrome (C535556)
..Adrenoleukodystrophy (D000326) 4
..Aldred syndrome (C537046)
..Allan-Herndon-Dudley syndrome (C537047)
..Arena syndrome (C537428)
..Armfield X-Linked Mental Retardation Syndrome (C564551)
..Atkin syndrome (C538195)
..ATR-X syndrome (C538258)
..Borjeson-Forssman-Lehmann syndrome (C536575)
..Brooks-Wisniewski-Brown Syndrome (C563154)
..Chromosome Xp11.3 Deletion Syndrome (C564481)
..CK SYNDROME (OMIM:300831)
..Clark-Baraitser syndrome (C536208)
..Classical Lissencephalies and Subcortical Band Heterotopias (D054221) 5
..Coffin-Lowry Syndrome (D038921)
..Cowchock syndrome (C536450)
..Creatine deficiency, X-linked (C535598)
..Encephalopathy, Neonatal Severe, Due To Mecp2 Mutations (C566878)
..Faciogenital Dysplasia with Attention Deficit-Hyperactivity Disorder (C564427)
..Fragile X Syndrome (D005600) 3
..Glycogen Storage Disease Type IIb (D052120)
..Lesch-Nyhan Syndrome (D007926) 1
..Lubs X-linked mental retardation syndrome (C537723)
..Lujan Fryns syndrome (C537724)
..MEHMO syndrome (C537451)
..Menkes Kinky Hair Syndrome (D007706) 1
..Mental Retardation And Microcephaly With Pontine And Cerebellar Hypoplasia (C567466)
..Mental Retardation with Psychosis, Pyramidal Signs, and Macroorchidism (C564724)
..Mental retardation X-linked syndromic 7 (C537449)
..Mental retardation X-linked, South African type (C537450)
..Mental Retardation, X-Linked 1 (C567906)
..Mental retardation, X-linked 14 (C537454)
..Mental Retardation, X-Linked 16 (C563139)
..Mental Retardation, X-Linked 17 (C563140)
..Mental Retardation, X-Linked 19 (C563141)
..Mental Retardation, X-Linked 2 (C563135)
..Mental Retardation, X-Linked 20 (C563142)
..MENTAL RETARDATION, X-LINKED 21 (OMIM:300143)
..Mental Retardation, X-Linked 23 (C563144)
..Mental Retardation, X-Linked 3 (C563136)
..Mental Retardation, X-Linked 30 (C563146)
..Mental Retardation, X-Linked 31 (C563147)
..Mental Retardation, X-Linked 34 (C563148)
..Mental Retardation, X-Linked 42 (C564524)
..Mental Retardation, X-Linked 45 (C564503)
..Mental Retardation, X-Linked 46 (C564513)
..Mental Retardation, X-Linked 47 (C563151)
..MENTAL RETARDATION, X-LINKED 49 (OMIM:300114)
..Mental Retardation, X-Linked 50 (C564713)
..Mental Retardation, X-Linked 52 (C564502)
..Mental Retardation, X-Linked 53 (C564533)
..Mental Retardation, X-Linked 58 (C564566)
..Mental Retardation, X-Linked 59 (C564470)
..Mental Retardation, X-Linked 63 (C564522)
..Mental Retardation, X-Linked 72 (C564547)
..Mental Retardation, X-Linked 73 (C564528)
..Mental Retardation, X-Linked 77 (C564511)
..Mental Retardation, X-Linked 78 (C564489)
..Mental Retardation, X-Linked 79 (C566876)
..Mental Retardation, X-Linked 81 (C564515)
..Mental Retardation, X-Linked 82 (C564496)
..Mental Retardation, X-Linked 84 (C564501)
..Mental Retardation, X-Linked 89 (C564036)
..Mental Retardation, X-Linked 9 (C563137)
..Mental Retardation, X-Linked 91 (C564482)
..Mental Retardation, X-Linked 92 (C564483)
..Mental Retardation, X-Linked 93 (C567066)
..Mental Retardation, X-Linked 94 (C567479)
..Mental Retardation, X-Linked 95 (C567470)
..MENTAL RETARDATION, X-LINKED 96 (OMIM:300802)
..Mental Retardation, X-Linked Nonsyndromic (C564490)
..Mental Retardation, X-Linked, Syndromic 10 (C564560)
..Mental Retardation, X-Linked, Syndromic 13 (C566875)
..Mental Retardation, X-Linked, Syndromic 14 (C567063)
..Mental retardation, X-linked, syndromic 5 (C535773)
..Mental Retardation, X-Linked, Syndromic 9 (C567474)
..Mental Retardation, X-Linked, Syndromic, Jarid1c-Related (C564494)
..MENTAL RETARDATION, X-LINKED, SYNDROMIC, RAYMOND TYPE (OMIM:300799)
..Mental Retardation, X-Linked, Syndromic, Ube2a-Related (C564069)
..Mental Retardation, X-Linked, Syp-Related (C567584)
..Mental Retardation, X-Linked, With Brachydactyly And Macroglossia (C567069)
..Mental retardation, X-linked, with cerebellar hypoplasia and distinctive facial appearance (C537456)
..Mental Retardation, X-Linked, with Epilepsy (C564516)
..Mental Retardation, X-Linked, with Isolated Growth Hormone Deficiency (C564712)
..Mental Retardation, X-Linked, With Or Without Seizures, Arx-Related (C563150)
..Mental Retardation, X-Linked, with Short Stature (C564527)
..MENTAL RETARDATION, X-LINKED, WITH SHORT STATURE, HYPOGONADISM, AND ABNORMAL GAIT (OMIM:300354)
..Mental Retardation, X-Linked, With Spasticity (C566877)
..Mental retardation-hypotonic facies syndrome, x-linked, 1 (C537457)
..Microphthalmia, Syndromic 4 (C564457)
..Miles-Carpenter x-linked mental retardation syndrome (C537472)
..Mucopolysaccharidosis II (D016532)
..Opitz-Kaveggia syndrome (C537923)
..Orofaciodigital syndrome, Shashi type (C537135)
..Partington X-linked mental retardation syndrome (C536300)
..Plagiocephaly and X-linked mental retardation (C537512)
..Ppm-X Syndrome (C580387)
..Prieto X-linked mental retardation syndrome (C535274)
..Pyruvate Dehydrogenase Complex Deficiency Disease (D015325) 4
..Renpenning syndrome 1 (C537761)
..Rett Syndrome (D015518) 5
..Roifman syndrome (C535866)
..Schimke X-linked mental retardation syndrome (C536630)
..Siderius X-linked mental retardation syndrome (C537333)
..Snyder Robinson syndrome (C536678)
..Stocco dos Santos syndrome (C537495)
..Tranebjaerg Svejgaard syndrome (C536978)
..Wilson-Turner X-linked mental retardation syndrome (C536708)
..Wittwer syndrome (C536737)
..X-linked mental retardation Gustavson type (C536759)
..X-linked mental retardation type Wittwer (C536760)
Human Disease MESH is developed by UMLS. Further data from MedGen, OMIM, CTD

Term ID:

7022

Name:

Mental Retardation, X-Linked 3

Definition:

Alternative IDs:

OMIM:309541

ParentIDs:

MESH:D038901

TreeNumbers:

C10.597.606.643.455/C563136 |C16.320.322.500/C563136 |C16.320.400.525/C563136

Synonyms:

MENTAL RETARDATION, X-LINKED 3 |METHYLMALONIC ACIDEMIA AND HOMOCYSTEINEMIA, cblX TYPE |MRX3

Slim Mappings:

Genetic disease (inborn)|Nervous system disease

Reference:

MedGen: C563136
MeSH: C563136
OMIM: 309541;

Genes: HCFC1;

Phenotypes

1	HP:0001419	X-linked recessive inheritance
2	HP:0003593	Infantile onset
3	HP:0002305	Athetosis	HP:0040283
4	HP:0000248	Brachycephaly
5	HP:0002072	Chorea	HP:0040283
6	HP:0001508	Failure to thrive
7	HP:0001290	Generalized hypotonia
8	HP:0002156	Homocystinuria	HP:0040283
9	HP:0002521	Hypsarrhythmia
10	HP:0001249	Intellectual disability
11	HP:0002912	Methylmalonic acidemia
12	HP:0012120	Methylmalonic aciduria
13	HP:0000252	Microcephaly
14	HP:0004322	Short stature

Disease Causing ClinVar Variants

Variation_Name	GeneID	GeneSymbol	ClinicalSignificance	dbSNP	RCVaccession	TestedInGTR	PhenotypeIDs	Chromosome	Start	Stop	HGVS_c	HGVS_p	HGVS_g	OtherIDs	Disease_ClinVar
NM_005334.2(HCFC1):c.5048C>G (p.Pro1683Arg)	3054	HCFC1	Pathogenic	869312686	RCV000209921;	N	MedGen:C0796208,OMIM:309541,ORPHA:369962	X	153217504	153217504	NM_005334.2:c.5048C>G	NP_005325.2:p.Pro1683Arg	NC_000023.10:g.153217504G>C	-	C0796208 309541 Mental retardation 3, X-linked
NM_005334.2(HCFC1):c.674G>A (p.Ser225Asn)	3054	HCFC1	Pathogenic	318240758	RCV000032897; RCV000059786;	N	MedGen:C0796208,OMIM:309541,ORPHA:369962; MedGen:CN221809	X	153228714	153228714	NM_005334.2:c.674G>A	NP_005325.2:p.Ser225Asn	NC_000023.10:g.153228714C>T	OMIM Allelic Variant:300019.0002,UniProtKB (variants):VAR_069098	C0796208 309541 Mental retardation 3, X-linked; CN221809 not provided
NM_005334.2(HCFC1):c.344C>T (p.Ala115Val)	3054	HCFC1	Pathogenic	397515485	RCV000057506;	N	MedGen:C0796208,OMIM:309541,ORPHA:369962	X	153229734	153229734	NM_005334.2:c.344C>T	NP_005325.2:p.Ala115Val	NC_000023.10:g.153229734G>A	OMIM Allelic Variant:300019.0003	C0796208 309541 Mental retardation 3, X-linked
NM_005334.2(HCFC1):c.218C>T (p.Ala73Val)	3054	HCFC1	Pathogenic	397515486	RCV000057507;	N	MedGen:C0796208,OMIM:309541,ORPHA:369962	X	153230153	153230153	NM_005334.2:c.218C>T	NP_005325.2:p.Ala73Val	NC_000023.10:g.153230153G>A	OMIM Allelic Variant:300019.0004	C0796208 309541 Mental retardation 3, X-linked
NM_005334.2(HCFC1):c.217G>A (p.Ala73Thr)	3054	HCFC1	Pathogenic	397515487	RCV000057508;	N	MedGen:C0796208,OMIM:309541,ORPHA:369962	X	153230154	153230154	NM_005334.2:c.217G>A	NP_005325.2:p.Ala73Thr	NC_000023.10:g.153230154C>T	OMIM Allelic Variant:300019.0005	C0796208 309541 Mental retardation 3, X-linked
NM_005334.2(HCFC1):c.-970T>C	3054	HCFC1	Pathogenic	398122908	RCV000032896;	N	MedGen:C0796208,OMIM:309541,ORPHA:369962	X	153237261	153237261	NM_005334.2:c.-970T>C		NC_000023.10:g.153237261A>G	OMIM Allelic Variant:300019.0001	C0796208 309541 Mental retardation 3, X-linked