MSeqDR Central Portal

MSeqDR Data Summary for the Term M:1-1000:
Ensembl Gene IDAssociated Gene NameLSDB GenesLSDB VariantsclinVar hitsEnsembl Gene IDEnsembl Transcript IDEnsembl Protein IDDescriptionChrGene StartGene EndStrandBandTranscript Start bpTranscript End bpAssociated Gene NameAssociated Transcript NameAssociated Gene DBAssociated Transcript DBTranscript countpct GC contentGene BiotypeTranscript BiotypeSource GeneSource TranscriptStatus geneStatus transcript EntrezGene IDHGNC IDHGNC SymbolRefSeq mRNASeq region id
ENSG00000210049 MSeqDR Search EnsemblMT-TF1277ENSG00000210049ENST00000387314mitochondrially encoded tRNA phenylalanine [Source:HGNC Symbol;Acc:7481]M5776471577647MT-TFMT-TF-201HGNC SymbolHGNC transcript name140.85Mt_tRNAMt_tRNAinsdcinsdcKNOWNKNOWN45587481MT-TF100965601
ENSG00000211459 MSeqDR Search EnsemblMT-RNR1133249ENSG00000211459ENST00000389680mitochondrially encoded 12S RNA [Source:HGNC Symbol;Acc:7470]M648160116481601MT-RNR1MT-RNR1-201HGNC SymbolHGNC transcript name145.49Mt_rRNAMt_rRNAinsdcinsdcKNOWNKNOWN45497470MT-RNR1100965601

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MSeqDR Master Exome Data Set M1: 52 entries from same gene

No.ChrPositionReferenceVariantEnsemblTranscriptIDEnsemblGeneIDGene_StartGene_EndEnsemblProteinIDGenestrandUniprotcChangepChangeNaturedbSNPFreqEVSphastConsSIFTPolyphenHGMDtypesamples
1M648AGENST00000389680ENSG000002114596481601-MT-RNR11-c.1A>G--NA--lod=140:497---hom1
2M663AGENST00000389680ENSG000002114596481601-MT-RNR11-c.16A>G--rs3937039--lod=140:497---hom21
3M686AGENST00000389680ENSG000002114596481601-MT-RNR11-c.39A>G--rs78880991------hom2
4M709GAENST00000389680ENSG000002114596481601-MT-RNR11-c.62G>A--rs2853517--lod=107:469---het1
5M709GAENST00000389680ENSG000002114596481601-MT-RNR11-c.62G>A--rs2853517--lod=107:469---hom128
6M710TCENST00000389680ENSG000002114596481601-MT-RNR11-c.63T>C--rs28358568--lod=107:469---hom2
7M710TCENST00000389680ENSG000002114596481601-MT-RNR11-c.63T>C--rs28358568--lod=107:469---het1
8M721TCENST00000389680ENSG000002114596481601-MT-RNR11-c.74T>C--NA------hom2
9M722CTENST00000389680ENSG000002114596481601-MT-RNR11-c.75C>T--NA--lod=38:358---hom1
10M723ACENST00000389680ENSG000002114596481601-MT-RNR11-c.76A>C--NA--lod=38:358---hom3
11M745AGENST00000389680ENSG000002114596481601-MT-RNR11-c.98A>G--NA------hom1
12M750AGENST00000389680ENSG000002114596481601-MT-RNR11-c.103A>G--rs112547485--lod=32:340---hom927
13M769GAENST00000389680ENSG000002114596481601-MT-RNR11-c.122G>A--rs111347407--lod=68:420---hom26
14M813AGENST00000389680ENSG000002114596481601-MT-RNR11-c.166A>G--rs77267909--lod=138:496---hom2
15M825TAENST00000389680ENSG000002114596481601-MT-RNR11-c.178T>A--rs111410691--lod=86:445---het1
16M825TAENST00000389680ENSG000002114596481601-MT-RNR11-c.178T>A--rs111410691--lod=86:445---hom10
17M827AGENST00000389680ENSG000002114596481601-MT-RNR11-c.180A>G--rs113842757--lod=86:445---hom22
18M896AGENST00000389680ENSG000002114596481601-MT-RNR11-c.249A>G--NA--lod=299:578---hom1
19M921TCENST00000389680ENSG000002114596481601-MT-RNR11-c.274T>C--rs28358570--lod=299:578---hom3
20M928AGENST00000389680ENSG000002114596481601-MT-RNR11-c.281A>G--NA--lod=15:259---hom2
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       Transcripts and variants in the surrounding MT-RNR1 M:648..1601 region Gbrowse