MToolBox Pipeline @ MSeqDR   Help file

Option 1: Copy and Paste Your FASTA Input Here

Option 2: Upload Input File

Drag & Drop fasta (single sequence fasta only), fastq, fastq.gz, bam, sam file here, file size up to 50MB...
 

Check Samples to Analyze:
1. Samplename6.bed - 1.3 KB
2. Samplename6.tab.txt - 8.0 KB
3. Samplename.bed - 1.3 KB
4. Samplename.tab.txt - 8.0 KB
5. 2018-02-10-10-27-9102_input.fasta - 0.1 KB
6. 2018-02-09-15-20-4319_input.fasta - 16.6 KB
7. 7777_rCRS_ConsensusSequence (3).fasta - 16.6 KB
8. 2222_rCRS_ConsensusSequence (2).fasta - 16.6 KB
9. trala2_rCRS_ConsensusSequence.fasta - 16.6 KB
10. Thea(1).txt - 0.5 KB
11. Thea.txt - 0.5 KB
12. 2018-02-05-16-00-6527_input.fasta - 0.4 KB
13. 2018-02-05-15-47-1061_input.fasta - 0.4 KB
14. MtDNA-05_S17_L001_R2_001.fastq(1).gz - 18,904.7 KB
15. MtDNA-05_S17_L001_R1_001.fastq(1).gz - 16,422.6 KB
16. MtDNA-05_S17_L001_R2_001.fastq.gz - 18,904.7 KB
17. MtDNA-05_S17_L001_R1_001.fastq.gz - 16,422.6 KB
18. 2018-02-03-09-14-4962_input.fasta - 0.5 KB
19. 2018-02-03-09-13-9625_input.fasta - 0.5 KB
20. 2018-02-03-09-13-2705_input.fasta - 0.5 KB
21. NG18-57-AR_S3_L001_R1_001.fastq - 338,609.3 KB
22. 2018-01-26-15-46-6451_input.fasta - 16.2 KB
23. 2018-01-26-15-45-9665_input.fasta - 4.0 KB
24. 2018-01-26-15-31-9879_input.fasta - 4.0 KB
25. 2018-01-26-14-02-7255_input.fasta - 16.2 KB
26. 2018-01-25-13-26-8597_input.fasta - 16.2 KB
27. 2018-01-25-09-13-9763_input.fasta - 16.7 KB
28. 2018-01-25-07-57-6842_input.fasta - 16.3 KB
29. 2018-01-25-05-39-5738_input.fasta - 0.2 KB
30. 2018-01-25-05-39-7858_input.fasta - 0.2 KB
31. 2018-01-25-05-39-5266_input.fasta - 0.2 KB
32. 2018-01-25-05-38-6027_input.fasta - 0.2 KB
33. 2018-01-25-05-37-9481_input.fasta - 0.2 KB
34. A0398-MtCombine_S14_L001_R2_001.fastq.gz - 77,078.4 KB
35. A0398-MtCombine_S14_L001_R1_001.fastq.gz - 69,799.0 KB
36. 231-231-1_S82_L001_R1_001.fastq.gz - 95,068.4 KB
37. mito7.fsta - 0.7 KB
38. TestTy.bed - 1.3 KB
39. TestTy.tab.txt - 8.0 KB
40. mtCPEOmut2545_S1.vcf - 1,957.5 KB
41. 2017-12-30-05-07-6455_input(1).fasta - 16.6 KB
42. Galaxy96-[Map_with_BWA-MEM_on_data_88_and_data_87_(mapped_reads_in_BAM_format)].bam - 46,770.4 KB
43. 2017-12-30-05-10-9481_input.fasta - 16.3 KB
44. 2017-12-30-05-09-1205_input.fasta - 16.3 KB
45. 2017-12-30-05-08-8715_input.fasta - 16.3 KB
46. 2017-12-30-05-07-6455_input.fasta - 16.6 KB
47. 2017-12-30-05-07-6879_input.fasta - 16.6 KB
48. 2017-12-29-08-14-8413_input.fasta - 16.6 KB
49. 2017-12-29-08-13-6429_input.fasta - 16.6 KB
50. 2017-12-25-01-07-2303_input.fasta - 16.2 KB
51. 2017-12-25-01-07-9775_input.fasta - 16.2 KB
52. G0017_S2_L001_R1_001.fastq.gz - 18,153.8 KB
53. A059.bam - 62,844.9 KB
54. SON_S81_L001_R1_001.fastq(1).gz - 24,978.7 KB
55. SON_S81_L001_R1_001.fastq.gz - 24,978.7 KB
56. RechtM13_S8_L001_R2_001.fastq.gz - 10,601.1 KB
57. RechtM13_S8_L001_R1_001.fastq.gz - 9,989.4 KB
58. S46589.fasta - 16.2 KB
59. D16903_S12_L001_R2_001.fastq.gz - 22,038.7 KB
60. D16903_S12_L001_R1_001.fastq.gz - 17,384.2 KB
61. D1110391_S2_L001_R2_001.fastq.gz - 3,727.7 KB
62. D1110391_S2_L001_R1_001.fastq.gz - 3,253.1 KB
63. D09703_S8_L001_R2_001.fastq.gz - 23,110.5 KB
64. D11101QI_S9_L001_R2_001.fastq.gz - 19,197.7 KB
65. D13203_S6_L001_R2_001.fastq.gz - 3,498.2 KB
66. D13203_S6_L001_R1_001.fastq.gz - 3,082.8 KB
67. D09703_S8_L001_R1_001.fastq.gz - 18,478.7 KB
68. D11101QI_S9_L001_R1_001.fastq.gz - 10,745.8 KB
69. D07501QI_S3_L001_R2_001.fastq.gz - 8,582.4 KB
70. D07404QI_S22_L001_R2_001.fastq.gz - 11,915.0 KB
71. D07401QI_S19_L001_R2_001.fastq.gz - 18,356.4 KB
72. D07501QI_S3_L001_R1_001.fastq.gz - 6,632.7 KB
73. D07303QI_S23_L001_R2_001.fastq.gz - 18,498.5 KB
74. D07401QI_S19_L001_R1_001.fastq.gz - 13,448.1 KB
75. D07404QI_S22_L001_R1_001.fastq.gz - 8,711.2 KB
76. D07303QI_S23_L001_R1_001.fastq.gz - 13,759.3 KB
77. D07301QI_S17_L001_R2_001.fastq.gz - 16,823.1 KB
78. D07203QI_S16_L001_R2_001.fastq.gz - 19,860.9 KB
79. D07301QI_S17_L001_R1_001.fastq.gz - 13,473.7 KB
80. D07201QI_S14_L001_R2_001.fastq.gz - 20,711.3 KB
81. D07203QI_S16_L001_R1_001.fastq.gz - 17,175.9 KB
82. D05803QI_S15_L001_R2_001.fastq.gz - 24,362.7 KB
83. D07201QI_S14_L001_R1_001.fastq.gz - 15,730.9 KB
84. D06503QI_S5_L001_R2_001.fastq.gz - 6,317.1 KB
85. D05803QI_S15_L001_R1_001.fastq.gz - 17,828.4 KB
86. D06503QI_S5_L001_R1_001.fastq.gz - 5,674.2 KB
87. D05801QI_S18_L001_R2_001.fastq.gz - 21,344.4 KB
88. D04904QI_S10_L001_R2_001.fastq.gz - 23,236.3 KB
89. D05801QI_S18_L001_R1_001.fastq.gz - 17,548.6 KB
90. D04904QI_S10_L001_R1_001.fastq.gz - 16,145.0 KB
91. D04902QI_S21_L001_R2_001.fastq.gz - 16,035.5 KB
92. D04901QI_S7_L001_R2_001.fastq.gz - 18,038.1 KB
93. D04902QI_S21_L001_R1_001.fastq.gz - 10,584.5 KB
94. D04901QI_S7_L001_R1_001.fastq.gz - 11,867.5 KB
95. D04803QI_S20_L001_R2_001.fastq.gz - 17,223.1 KB
96. D04801QI_S11_L001_R2_001.fastq.gz - 21,515.0 KB
97. D04801QI_S11_L001_R1_001.fastq.gz - 17,056.5 KB
98. D04803QI_S20_L001_R1_001.fastq.gz - 13,631.4 KB
99. C61801D_S13_L001_R2_001.fastq.gz - 16,981.2 KB
100. D04703QI_S4_L001_R2_001.fastq.gz - 3,150.3 KB
101. D04703QI_S4_L001_R1_001.fastq.gz - 2,630.1 KB
102. C61801D_S13_L001_R1_001.fastq.gz - 12,231.1 KB
103. C61801C_S24_L001_R2_001.fastq.gz - 10,561.2 KB
104. C72201QI_S1_L001_R2_001.fastq.gz - 1,749.5 KB
105. C72201QI_S1_L001_R1_001.fastq.gz - 1,325.8 KB
106. C61801C_S24_L001_R1_001.fastq.gz - 6,694.8 KB
107. 2017-12-07-21-34-1441_input.fasta - 0.4 KB
108. 2017-12-07-21-33-8251_input.fasta - 0.4 KB
109. 2017-12-07-21-32-0691_input.fasta - 0.4 KB
110. 2017-12-07-21-31-8660_input.fasta - 0.4 KB
111. 2017-12-03-15-19-6639_input.fasta - 16.7 KB
112. IF4_rCS_cns.fasta - 16.2 KB
113. mito1(1).bam - 623.2 KB
114. Vesna DNA no header.csv - 17,479.6 KB
115. CoA-248_S7_L001_R2_001.fastq - 12,975.5 KB
116. CoA-248_S7_L001_R1_001.fastq - 12,825.9 KB
117. Galaxy107-[RmDup_on_SM34].bam - 4,478.6 KB
118. 2017-11-02-05-56-0366_input.fasta - 16.6 KB
119. 2017-11-02-05-53-1718_input.fasta - 14.7 KB
120. 2017-11-02-05-52-2042_input.fasta - 14.7 KB
121. test.fasta - 0.2 KB
122. 2017-10-27-04-36-9979_input.fasta - 16.6 KB
123. 2017-10-27-04-36-8129_input.fasta - 16.6 KB
124. 2017-10-25-04-34-5018_input.fasta - 1.4 KB
125. CoA-360_S93_out_dedup.bam - 6,444.0 KB
126. CoA-360_S93_out_realigned.bam - 6,432.8 KB
127. CoA-355_S69_out_realigned.bai - 0.2 KB
128. CoA-360_S93_out_realigned.bai - 0.3 KB
129. CoA-371_S143_out_dedup.bam - 4,444.1 KB
130. CoA-369_S142_out_dedup.bam - 4,031.3 KB
131. CoA-369_S142_out_realigned.bam - 4,035.7 KB
132. CoA-369_S142_out_realigned.bai - 0.3 KB
133. CoA-371_S143_out_realigned.bam - 4,449.2 KB
134. CoA-373_S144_out_dedup.bam - 865.3 KB
135. CoA-373_S144_out_realigned.bam - 865.9 KB
136. CoA-371_S143_out_realigned.bai - 0.3 KB
137. CoA-377_S145_out_dedup.bam - 2,453.3 KB
138. CoA-377_S145_out_realigned.bam - 2,445.0 KB
139. CoA-373_S144_out_realigned.bai - 0.2 KB
140. CoA-377_S145_out_realigned.bai - 0.2 KB
141. CoA-380_S146_out_dedup.bam - 5,528.5 KB
142. CoA-380_S146_out_realigned.bam - 5,533.5 KB
143. CoA-383_S147_out_dedup.bam - 3,421.0 KB
144. CoA-383_S147_out_realigned.bam - 3,415.2 KB
145. CoA-380_S146_out_realigned.bai - 0.3 KB
146. CoA-390_S149_out_dedup.bam - 8,350.2 KB
147. CoA-390_S149_out_realigned.bam - 8,331.9 KB
148. CoA-412_S152_out_dedup.bam - 8,524.0 KB
149. CoA-383_S147_out_realigned.bai - 0.3 KB
150. CoA-412_S152_out_realigned.bam - 8,531.1 KB
151. CoA-390_S149_out_realigned.bai - 0.4 KB
152. CoA-414_S153_out_dedup.bam - 9,614.8 KB
153. CoA-414_S153_out_realigned.bam - 9,626.0 KB
154. CoA-412_S152_out_realigned.bai - 0.3 KB
155. CoA-425_S155_out_dedup.bam - 11,410.0 KB
156. CoA-425_S155_out_realigned.bam - 11,425.9 KB
157. CoA-414_S153_out_realigned.bai - 0.3 KB
158. CoA-417_S154_out_dedup.bam - 1,540.1 KB
159. CoA-417_S154_out_realigned.bam - 1,541.2 KB
160. CoA-417_S154_out_realigned.bai - 0.2 KB
161. CoA-431_S156_out_dedup.bam - 2,842.2 KB
162. CoA-431_S156_out_realigned.bam - 2,840.9 KB
163. CoA-425_S155_out_realigned.bai - 0.4 KB
164. CoA-433_S157_out_dedup.bam - 3,625.4 KB
165. CoA-438_S158_out_dedup.bam - 4,881.7 KB
166. CoA-431_S156_out_realigned.bai - 0.3 KB
167. CoA-433_S157_out_realigned.bam - 3,617.6 KB
168. CoA-438_S158_out_realigned.bam - 4,879.8 KB
169. CoA-445_S159_out_dedup.bam - 6,043.3 KB
170. CoA-433_S157_out_realigned.bai - 0.3 KB
171. CoA-445_S159_out_realigned.bam - 6,029.0 KB
172. CoA-446_S160_out_dedup.bam - 5,282.2 KB
173. CoA-438_S158_out_realigned.bai - 0.3 KB
174. CoA-446_S160_out_realigned.bam - 5,274.6 KB
175. CoA-447_S161_out_dedup.bam - 7,290.7 KB
176. CoA-445_S159_out_realigned.bai - 0.4 KB
177. CoA-447_S161_out_realigned.bam - 7,266.1 KB
178. CoA-446_S160_out_realigned.bai - 0.3 KB
179. CoA-509_S162_out_dedup.bam - 7,156.8 KB
180. CoA-509_S162_out_realigned.bam - 7,135.4 KB
181. CoA-512_S163_out_dedup.bam - 4,378.1 KB
182. CoA-447_S161_out_realigned.bai - 0.4 KB
183. CoA-509_S162_out_realigned.bai - 0.4 KB
184. CoA-512_S163_out_realigned.bam - 4,377.0 KB
185. EGY2012-Moh-229_S29_out_dedup.bam - 19,000.6 KB
186. EGY2012-Moh-229_S29_out_realigned.bam - 18,971.0 KB
187. CoA-512_S163_out_realigned.bai - 0.2 KB
188. CoA-639_S165_out_dedup.bam - 2,691.3 KB
189. CoA-639_S165_out_realigned.bam - 2,681.9 KB
190. CoA-639_S165_out_realigned.bai - 0.2 KB
191. CoA-640_S166_out_dedup.bam - 1,146.8 KB
192. CoA-640_S166_out_realigned.bam - 1,146.1 KB
193. CoA-640_S166_out_realigned.bai - 0.2 KB
194. CoA-641_S167_out_dedup.bam - 6,805.2 KB
195. CoA-641_S167_out_realigned.bam - 6,819.5 KB
196. CoA-641_S167_out_realigned.bai - 0.4 KB
197. EGY2012-Moh-230_S40_out_realigned.bam - 8,420.6 KB
198. EGY2012-Moh-230_S40_out_dedup.bam - 8,441.7 KB
199. EGY2012-Moh-237_S64_out_dedup.bam - 6,361.3 KB
200. EGY2012-Moh-229_S29_out_realigned.bai - 0.7 KB
201. EGY2012-Moh-237_S64_out_realigned.bam - 6,356.1 KB
202. EGY2012-Moh-230_S40_out_realigned.bai - 0.3 KB
203. EGY2012-Moh-241_S94_out_dedup.bam - 9,619.6 KB
204. EGY2012-Moh-237_S64_out_realigned.bai - 0.3 KB
205. EGY2012-Moh-239_S75_out_realigned.bam - 7,476.9 KB
206. EGY2012-Moh-241_S94_out_realigned.bam - 9,621.5 KB
207. EGY2012-Moh-239_S75_out_dedup.bam - 7,497.8 KB
208. EGY2012-Moh-243_S95_out_dedup.bam - 1,647.3 KB
209. EGY2012-Moh-239_S75_out_realigned.bai - 0.4 KB
210. EGY2012-Moh-243_S95_out_realigned.bam - 1,645.8 KB
211. EGY2012-Moh-241_S94_out_realigned.bai - 0.3 KB
212. EGY2012-Moh-244_S96_out_dedup.bam - 2,731.5 KB
213. EGY2012-Moh-244_S96_out_realigned.bam - 2,730.0 KB
214. EGY2012-Moh-243_S95_out_realigned.bai - 0.2 KB
215. EGY2012-Moh-246_S98_out_dedup.bam - 3,865.9 KB
216. EGY2012-Moh-246_S98_out_realigned.bam - 3,858.9 KB
217. EGY2012-Moh-244_S96_out_realigned.bai - 0.2 KB
218. EGY2012-Moh-248_S100_out_dedup.bam - 9,084.1 KB
219. EGY2012-Moh-248_S100_out_realigned.bam - 9,075.3 KB
220. EGY2012-Moh-247_S99_out_dedup.bam - 5,133.1 KB
221. EGY2012-Moh-246_S98_out_realigned.bai - 0.3 KB
222. EGY2012-Moh-247_S99_out_realigned.bam - 5,124.4 KB
223. EGY2012-Moh-247_S99_out_realigned.bai - 0.3 KB
224. EGY2012-Moh-251_S101_out_dedup.bam - 6,416.8 KB
225. EGY2012-Moh-251_S101_out_realigned.bam - 6,385.9 KB
226. EGY2012-Moh-248_S100_out_realigned.bai - 0.4 KB
227. EGY2012-Moh-254_S102_out_realigned.bam - 8,054.7 KB
228. EGY2012-Moh-254_S102_out_dedup.bam - 8,077.0 KB
229. EGY2012-Moh-251_S101_out_realigned.bai - 0.4 KB
230. EGY2012-Moh-255_S103_out_dedup.bam - 5,396.8 KB
231. EGY2012-Moh-255_S103_out_realigned.bam - 5,395.0 KB
232. EGY2012-Moh-254_S102_out_realigned.bai - 0.5 KB
233. EGY2012-Moh-256_S104_out_dedup.bam - 1,972.1 KB
234. EGY2012-Moh-256_S104_out_realigned.bam - 1,966.5 KB
235. EGY2012-Moh-255_S103_out_realigned.bai - 0.3 KB
236. EGY2012-Moh-257_S105_out_dedup.bam - 8,527.8 KB
237. EGY2012-Moh-256_S104_out_realigned.bai - 0.2 KB
238. EGY2012-Moh-258_S106_out_realigned.bam - 8,926.7 KB
239. EGY2012-Moh-257_S105_out_realigned.bam - 8,509.7 KB
240. EGY2012-Moh-258_S106_out_dedup.bam - 8,926.4 KB
241. EGY2012-Moh-257_S105_out_realigned.bai - 0.4 KB
242. EGY2012-Moh-262_S108_out_realigned.bam - 2,723.3 KB
243. EGY2012-Moh-262_S108_out_dedup.bam - 2,725.3 KB
244. EGY2012-Moh-266_S111_out_dedup.bam - 7,464.1 KB
245. EGY2012-Moh-258_S106_out_realigned.bai - 0.4 KB
246. EGY2012-Moh-266_S111_out_realigned.bam - 7,445.0 KB
247. EGY2012-Moh-262_S108_out_realigned.bai - 0.2 KB
248. EGY2012-Moh-263_S109_out_dedup.bam - 1,951.4 KB
249. EGY2012-Moh-263_S109_out_realigned.bam - 1,947.9 KB
250. EGY2012-Moh-264_S110_out_dedup.bam - 1,842.1 KB
251. EGY2012-Moh-263_S109_out_realigned.bai - 0.2 KB
252. EGY2012-Moh-264_S110_out_realigned.bam - 1,839.9 KB
253. EGY2012-Moh-268_S112_out_dedup.bam - 3,989.7 KB
254. EGY2012-Moh-264_S110_out_realigned.bai - 0.2 KB
255. EGY2012-Moh-268_S112_out_realigned.bam - 3,987.7 KB
256. EGY2012-Moh-266_S111_out_realigned.bai - 0.4 KB
257. EGY2012-Moh-269_S113_out_dedup.bam - 5,194.9 KB
258. EGY2012-Moh-269_S113_out_realigned.bam - 5,170.8 KB
259. EGY2012-Moh-273_S114_out_dedup.bam - 7,080.2 KB
260. EGY2012-Moh-268_S112_out_realigned.bai - 0.3 KB
261. EGY2012-Moh-273_S114_out_realigned.bam - 7,053.5 KB
262. EGY2012-Moh-269_S113_out_realigned.bai - 0.4 KB
263. EGY2012-Moh-274_S115_out_dedup.bam - 5,392.0 KB
264. EGY2012-Moh-274_S115_out_realigned.bam - 5,392.3 KB
265. EGY2012-Moh-273_S114_out_realigned.bai - 0.4 KB
266. EGY2012-Moh-278_S117_out_dedup.bam - 4,186.6 KB
267. EGY2012-Moh-278_S117_out_realigned.bam - 4,177.6 KB
268. EGY2012-Moh-274_S115_out_realigned.bai - 0.3 KB
269. EGY2012-Moh-279_S118_out_dedup.bam - 3,465.7 KB
270. EGY2012-Moh-279_S118_out_realigned.bam - 3,465.9 KB
271. EGY2012-Moh-278_S117_out_realigned.bai - 0.3 KB
272. EGY2012-Moh-283_S119_out_dedup.bam - 748.1 KB
273. EGY2012-Moh-283_S119_out_realigned.bam - 748.5 KB
274. EGY2012-Moh-279_S118_out_realigned.bai - 0.3 KB
275. EGY2012-Moh-284_S120_out_dedup.bam - 2,233.0 KB
276. EGY2012-Moh-283_S119_out_realigned.bai - 0.2 KB
277. EGY2012-Moh-284_S120_out_realigned.bam - 2,231.2 KB
278. EGY2012-Moh-285_S121_out_dedup.bam - 2,521.0 KB
279. EGY2012-Moh-285_S121_out_realigned.bam - 2,514.8 KB
280. EGY2012-Moh-284_S120_out_realigned.bai - 0.2 KB
281. EGY2012-Moh-289_S122_out_dedup.bam - 1,216.6 KB
282. EGY2012-Moh-289_S122_out_realigned.bam - 1,213.7 KB
283. EGY2012-Moh-285_S121_out_realigned.bai - 0.2 KB
284. EGY2012-Moh-296_S124_out_dedup.bam - 6,709.7 KB
285. EGY2012-Moh-296_S124_out_realigned.bam - 6,696.2 KB
286. EGY2012-Moh-289_S122_out_realigned.bai - 0.2 KB
287. EGY2012-Moh-294_S123_out_dedup.bam - 3,525.9 KB
288. EGY2012-Moh-294_S123_out_realigned.bam - 3,518.5 KB
289. EGY2012-Moh-294_S123_out_realigned.bai - 0.3 KB
290. H100_S81_out_dedup.bam - 4,522.9 KB
291. H100_S81_out_realigned.bam - 4,515.9 KB
292. EGY2012-Moh-296_S124_out_realigned.bai - 0.3 KB
293. EGY2012-Moh-301_S125_out_dedup.bam - 2,436.7 KB
294. EGY2012-Moh-301_S125_out_realigned.bam - 2,426.9 KB
295. EGY2012-Moh-301_S125_out_realigned.bai - 0.2 KB
296. H111_S218_out_dedup.bam - 10,132.0 KB
297. H111_S218_out_realigned.bam - 10,146.2 KB
298. H100_S81_out_realigned.bai - 0.3 KB
299. H104_S148_out_dedup.bam - 6,982.8 KB
300. H104_S148_out_realigned.bam - 6,965.8 KB
301. H115_S150_out_dedup.bam - 5,473.2 KB
302. H104_S148_out_realigned.bai - 0.3 KB
303. H115_S150_out_realigned.bam - 5,456.6 KB
304. H111_S218_out_realigned.bai - 0.4 KB
305. H11_S176_out_dedup.bam - 4,633.8 KB
306. H11_S176_out_realigned.bam - 4,634.5 KB
307. H125_S224_out_dedup.bam - 9,170.7 KB
308. H115_S150_out_realigned.bai - 0.3 KB
309. H125_S224_out_realigned.bam - 9,177.3 KB
310. H11_S176_out_realigned.bai - 0.3 KB
311. H120_S151_out_dedup.bam - 2,926.0 KB
312. H120_S151_out_realigned.bam - 2,926.4 KB
313. H120_S151_out_realigned.bai - 0.2 KB
314. H134_S168_out_realigned.bam - 13,282.6 KB
315. H134_S168_out_dedup.bam - 13,272.4 KB
316. H125_S224_out_realigned.bai - 0.4 KB
317. H126_S164_out_dedup.bam - 7,651.1 KB
318. H126_S164_out_realigned.bam - 7,660.8 KB
319. H13_S177_out_dedup.bam - 4,352.1 KB
320. H126_S164_out_realigned.bai - 0.3 KB
321. H13_S177_out_realigned.bam - 4,338.0 KB
322. H138_S169_out_dedup.bam - 1,318.5 KB
323. H134_S168_out_realigned.bai - 0.5 KB
324. H138_S169_out_realigned.bam - 1,314.6 KB
325. H138_S169_out_realigned.bai - 0.2 KB
326. H145_S195_out_dedup.bam - 12,215.2 KB
327. H145_S195_out_realigned.bam - 12,217.8 KB
328. H13_S177_out_realigned.bai - 0.3 KB
329. H141_S186_out_dedup.bam - 3,198.0 KB
330. H141_S186_out_realigned.bam - 3,183.5 KB
331. H146_S201_out_dedup.bam - 6,953.3 KB
332. H141_S186_out_realigned.bai - 0.3 KB
333. H146_S201_out_realigned.bam - 6,958.5 KB
334. H145_S195_out_realigned.bai - 0.5 KB
335. H147_S207_out_dedup.bam - 6,531.7 KB
336. H147_S207_out_realigned.bam - 6,541.3 KB
337. H146_S201_out_realigned.bai - 0.3 KB
338. H148_S213_out_dedup.bam - 6,297.4 KB
339. H148_S213_out_realigned.bam - 6,300.6 KB
340. H147_S207_out_realigned.bai - 0.3 KB
341. H152_S225_out_realigned.bam - 10,015.5 KB
342. H152_S225_out_dedup.bam - 10,008.6 KB
343. H148_S213_out_realigned.bai - 0.3 KB
344. H149_S219_out_dedup.bam - 7,535.3 KB
345. H149_S219_out_realigned.bam - 7,521.7 KB
346. H149_S219_out_realigned.bai - 0.3 KB
347. H14_S178_out_dedup.bam - 900.4 KB
348. H14_S178_out_realigned.bam - 901.2 KB
349. H14_S178_out_realigned.bai - 0.2 KB
350. H152_S225_out_realigned.bai - 0.4 KB
351. H153_S194_out_dedup.bam - 6,384.2 KB
352. H154_S230_out_realigned.bam - 6,541.2 KB
353. H153_S194_out_realigned.bam - 6,384.6 KB
354. H154_S230_out_dedup.bam - 6,536.2 KB
355. H153_S194_out_realigned.bai - 0.3 KB
356. H156_S231_out_dedup.bam - 5,870.4 KB
357. H156_S231_out_realigned.bam - 5,872.0 KB
358. H157_S236_out_dedup.bam - 5,426.5 KB
359. H154_S230_out_realigned.bai - 0.3 KB
360. H156_S231_out_realigned.bai - 0.3 KB
361. H157_S236_out_realigned.bam - 5,423.8 KB
362. H15_S179_out_dedup.bam - 6,198.6 KB
363. H15_S179_out_realigned.bam - 6,213.9 KB
364. H157_S236_out_realigned.bai - 0.3 KB
365. H162_S237_out_dedup.bam - 3,548.1 KB
366. H162_S237_out_realigned.bam - 3,550.9 KB
367. H15_S179_out_realigned.bai - 0.3 KB
368. H18_S180_out_dedup.bam - 9,091.2 KB
369. H18_S180_out_realigned.bam - 9,103.4 KB
370. H162_S237_out_realigned.bai - 0.2 KB
371. H1_S170_out_dedup.bam - 6,674.0 KB
372. H1_S170_out_realigned.bam - 6,675.7 KB
373. H18_S180_out_realigned.bai - 0.4 KB
374. H1_S170_out_realigned.bai - 0.3 KB
375. H22_S181_out_dedup.bam - 2,478.9 KB
376. H22_S181_out_realigned.bam - 2,473.6 KB
377. H23_S182_out_dedup.bam - 5,987.5 KB
378. H23_S182_out_realigned.bam - 5,985.2 KB
379. H22_S181_out_realigned.bai - 0.2 KB
380. H25_S183_out_realigned.bam - 3,241.4 KB
381. H25_S183_out_dedup.bam - 3,244.9 KB
382. H23_S182_out_realigned.bai - 0.4 KB
383. H25_S183_out_realigned.bai - 0.3 KB
384. H28_S185_out_dedup.bam - 9,063.1 KB
385. H27_S184_out_dedup.bam - 4,428.1 KB
386. H27_S184_out_realigned.bam - 4,419.6 KB
387. H28_S185_out_realigned.bam - 9,033.5 KB
388. H27_S184_out_realigned.bai - 0.3 KB
389. H32_S188_out_realigned.bam - 7,299.1 KB
390. H32_S188_out_dedup.bam - 7,296.7 KB
391. H28_S185_out_realigned.bai - 0.5 KB
392. H31_S187_out_dedup.bam - 1,779.3 KB
393. H31_S187_out_realigned.bam - 1,776.9 KB
394. H36_S193_out_dedup.bam - 16,150.2 KB
395. H31_S187_out_realigned.bai - 0.2 KB
396. H36_S193_out_realigned.bam - 16,179.4 KB
397. H32_S188_out_realigned.bai - 0.4 KB
398. H34_S189_out_dedup.bam - 6,012.5 KB
399. H34_S189_out_realigned.bam - 5,992.3 KB
400. H38_S199_out_realigned.bam - 10,473.0 KB
401. H34_S189_out_realigned.bai - 0.4 KB
402. H38_S199_out_dedup.bam - 10,460.2 KB
403. H39_S205_out_dedup.bam - 6,654.0 KB
404. H36_S193_out_realigned.bai - 0.4 KB
405. H39_S205_out_realigned.bam - 6,658.4 KB
406. H38_S199_out_realigned.bai - 0.3 KB
407. H3_S171_out_dedup.bam - 4,662.2 KB
408. H3_S171_out_realigned.bam - 4,654.8 KB
409. H39_S205_out_realigned.bai - 0.3 KB
410. H42_S217_out_dedup.bam - 9,528.9 KB
411. H42_S217_out_realigned.bam - 9,529.5 KB
412. H41_S211_out_dedup.bam - 6,995.8 KB
413. H3_S171_out_realigned.bai - 0.3 KB
414. H41_S211_out_realigned.bam - 7,002.5 KB
415. H51_S223_out_dedup.bam - 6,479.2 KB
416. H41_S211_out_realigned.bai - 0.3 KB
417. H51_S223_out_realigned.bam - 6,483.9 KB
418. H42_S217_out_realigned.bai - 0.4 KB
419. H4_S172_out_dedup.bam - 4,868.9 KB
420. H4_S172_out_realigned.bam - 4,857.6 KB
421. H5_S173_out_dedup.bam - 11,103.8 KB
422. H4_S172_out_realigned.bai - 0.3 KB
423. H5_S173_out_realigned.bam - 11,067.4 KB
424. H51_S223_out_realigned.bai - 0.3 KB
425. H57_S229_out_dedup.bam - 7,403.4 KB
426. H57_S229_out_realigned.bam - 7,406.0 KB
427. H57_S229_out_realigned.bai - 0.3 KB
428. H63_S235_out_dedup.bam - 5,868.2 KB
429. H63_S235_out_realigned.bam - 5,869.3 KB
430. H5_S173_out_realigned.bai - 0.5 KB
431. H6_S174_out_dedup.bam - 6,173.2 KB
432. H6_S174_out_realigned.bam - 6,150.7 KB
433. H63_S235_out_realigned.bai - 0.3 KB
434. H72_S41_out_dedup.bam - 4,864.2 KB
435. H72_S41_out_realigned.bam - 4,835.4 KB
436. H6_S174_out_realigned.bai - 0.3 KB
437. H75_S200_out_dedup.bam - 5,075.8 KB
438. H75_S200_out_realigned.bam - 5,071.0 KB
439. H72_S41_out_realigned.bai - 0.4 KB
440. H81_S32_out_dedup.bam - 3,452.2 KB
441. H81_S32_out_realigned.bam - 3,432.6 KB
442. H75_S200_out_realigned.bai - 0.3 KB
443. H83_S44_out_dedup.bam - 1,605.5 KB
444. H83_S44_out_realigned.bam - 1,605.1 KB
445. H81_S32_out_realigned.bai - 0.3 KB
446. H85_S34_out_dedup.bam - 3,043.3 KB
447. H85_S34_out_realigned.bam - 3,044.2 KB
448. H83_S44_out_realigned.bai - 0.2 KB
449. H91_S206_out_realigned.bam - 4,857.9 KB
450. H91_S206_out_dedup.bam - 4,860.3 KB
451. H85_S34_out_realigned.bai - 0.2 KB
452. H93_S212_out_realigned.bam - 3,717.9 KB
453. H93_S212_out_dedup.bam - 3,721.0 KB
454. H91_S206_out_realigned.bai - 0.3 KB
455. Psor-143_S1_out_realigned.bam - 9,981.6 KB
456. Psor-143_S1_out_dedup.bam - 10,011.8 KB
457. H93_S212_out_realigned.bai - 0.3 KB
458. H94_S46_out_dedup.bam - 3,156.4 KB
459. H94_S46_out_realigned.bam - 3,155.5 KB
460. H9_S175_out_dedup.bam - 2,695.3 KB
461. H94_S46_out_realigned.bai - 0.2 KB
462. H9_S175_out_realigned.bam - 2,696.0 KB
463. H9_S175_out_realigned.bai - 0.2 KB
464. Psor-144_S12_out_dedup.bam - 2,159.8 KB
465. Psor-144_S12_out_realigned.bam - 2,150.6 KB
466. Psor-143_S1_out_realigned.bai - 0.4 KB
467. Psor-145_S24_out_dedup.bam - 6,430.4 KB
468. Psor-145_S24_out_realigned.bam - 6,414.0 KB
469. Psor-144_S12_out_realigned.bai - 0.2 KB
470. Psor-147_S47_out_dedup.bam - 6,325.6 KB
471. Psor-147_S47_out_realigned.bam - 6,301.1 KB
472. Psor-145_S24_out_realigned.bai - 0.3 KB
473. Psor-149_S70_out_dedup.bam - 4,048.8 KB
474. Psor-147_S47_out_realigned.bai - 0.4 KB
475. Psor-148_S59_out_dedup.bam - 2,766.4 KB
476. Psor-148_S59_out_realigned.bam - 2,753.5 KB
477. Psor-149_S70_out_realigned.bam - 4,025.6 KB
478. Psor-148_S59_out_realigned.bai - 0.3 KB
479. Psor-150_S82_out_dedup.bam - 4,848.1 KB
480. Psor-150_S82_out_realigned.bam - 4,824.2 KB
481. Psor-151_S2_out_dedup.bam - 5,401.8 KB
482. Psor-149_S70_out_realigned.bai - 0.3 KB
483. Psor-151_S2_out_realigned.bam - 5,378.3 KB
484. Psor-150_S82_out_realigned.bai - 0.4 KB
485. Psor-152_S13_out_dedup.bam - 2,927.8 KB
486. Psor-152_S13_out_realigned.bam - 2,909.7 KB
487. Psor-151_S2_out_realigned.bai - 0.3 KB
488. Psor-155_S48_out_dedup.bam - 13,403.5 KB
489. Psor-155_S48_out_realigned.bam - 13,362.4 KB
490. Psor-153_S25_out_dedup.bam - 3,823.3 KB
491. Psor-152_S13_out_realigned.bai - 0.3 KB
492. Psor-153_S25_out_realigned.bam - 3,803.1 KB
493. Psor-153_S25_out_realigned.bai - 0.3 KB
494. Psor-154_S36_out_dedup.bam - 2,860.3 KB
495. Psor-154_S36_out_realigned.bam - 2,842.9 KB
496. Psor-154_S36_out_realigned.bai - 0.3 KB
497. Psor-156_S60_out_dedup.bam - 8,167.6 KB
498. Psor-156_S60_out_realigned.bam - 8,133.8 KB
499. Psor-155_S48_out_realigned.bai - 0.5 KB
500. Psor-157_S71_out_dedup.bam - 8,560.0 KB
501. Psor-157_S71_out_realigned.bam - 8,539.0 KB
502. Psor-156_S60_out_realigned.bai - 0.4 KB
503. Psor-159_S3_out_realigned.bam - 13,854.7 KB
504. Psor-159_S3_out_dedup.bam - 13,916.5 KB
505. Psor-157_S71_out_realigned.bai - 0.4 KB
506. Psor-158_S83_out_dedup.bam - 7,048.2 KB
507. Psor-158_S83_out_realigned.bam - 7,016.2 KB
508. Psor-158_S83_out_realigned.bai - 0.4 KB
509. Psor-160_S14_out_dedup.bam - 9,814.7 KB
510. Psor-160_S14_out_realigned.bam - 9,773.4 KB
511. Psor-159_S3_out_realigned.bai - 0.6 KB
512. Psor-161_S26_out_dedup.bam - 8,730.2 KB
513. Psor-161_S26_out_realigned.bam - 8,702.3 KB
514. Psor-163_S49_out_dedup.bam - 11,983.6 KB
515. Psor-160_S14_out_realigned.bai - 0.5 KB
516. Psor-163_S49_out_realigned.bam - 11,946.3 KB
517. Psor-161_S26_out_realigned.bai - 0.4 KB
518. Psor-162_S37_out_dedup.bam - 6,269.1 KB
519. Psor-162_S37_out_realigned.bam - 6,255.3 KB
520. Psor-162_S37_out_realigned.bai - 0.3 KB
521. Psor-164_S61_out_realigned.bam - 7,935.9 KB
522. Psor-164_S61_out_dedup.bam - 7,956.2 KB
523. Psor-163_S49_out_realigned.bai - 0.6 KB
524. Psor-165_S72_out_dedup.bam - 9,739.1 KB
525. Psor-165_S72_out_realigned.bam - 9,703.9 KB
526. Psor-164_S61_out_realigned.bai - 0.4 KB
527. Psor-166_S84_out_dedup.bam - 7,078.3 KB
528. Psor-166_S84_out_realigned.bam - 7,053.0 KB
529. Psor-165_S72_out_realigned.bai - 0.5 KB
530. Psor-167_S4_out_dedup.bam - 11,761.0 KB
531. Psor-167_S4_out_realigned.bam - 11,759.1 KB
532. Psor-168_S15_out_dedup.bam - 12,274.8 KB
533. Psor-166_S84_out_realigned.bai - 0.4 KB
534. Psor-168_S15_out_realigned.bam - 12,268.1 KB
535. Psor-167_S4_out_realigned.bai - 0.4 KB
536. Psor-169_S27_out_realigned.bam - 7,947.3 KB
537. Psor-169_S27_out_dedup.bam - 7,932.8 KB
538. Psor-168_S15_out_realigned.bai - 0.4 KB
539. Psor-173_S38_out_dedup.bam - 10,819.0 KB
540. Psor-173_S38_out_realigned.bam - 10,785.8 KB
541. Psor-169_S27_out_realigned.bai - 0.3 KB
542. Psor-174_S50_out_dedup.bam - 11,041.5 KB
543. Psor-174_S50_out_realigned.bam - 11,051.7 KB
544. Psor-173_S38_out_realigned.bai - 0.4 KB
545. Psor-175_S35_out_realigned.bam - 10,322.6 KB
546. Psor-175_S35_out_dedup.bam - 10,347.1 KB
547. Psor-176_S52_out_dedup.bam - 16,282.4 KB
548. Psor-176_S52_out_realigned.bam - 16,272.8 KB
549. Psor-177_S87_out_dedup.bam - 13,825.8 KB
550. Psor-177_S87_out_realigned.bam - 13,824.5 KB
551. Psor-178_S97_out_dedup.bam - 3,782.2 KB
552. Psor-178_S97_out_realigned.bam - 3,778.1 KB
553. Psor-179_S107_out_dedup.bam - 2,296.9 KB
554. Psor-179_S107_out_realigned.bam - 2,296.1 KB
555. Psor-180_S116_out_dedup.bam - 1,270.2 KB
556. Psor-180_S116_out_realigned.bam - 1,267.4 KB
557. Psor-183_S137_out_dedup.bam - 3,801.0 KB
558. Psor-183_S137_out_realigned.bam - 3,784.8 KB
559. Psor-181_S131_out_dedup.bam - 1,009.6 KB
560. Psor-181_S131_out_realigned.bam - 1,008.3 KB
561. Psor-182_S132_out_dedup.bam - 982.5 KB
562. Psor-182_S132_out_realigned.bam - 983.1 KB
563. Psor-184_S190_out_dedup.bam - 5,173.9 KB
564. Psor-198_S62_out_dedup.bam - 10,753.7 KB
565. Psor-184_S190_out_realigned.bam - 5,170.9 KB
566. Psor-198_S62_out_realigned.bam - 10,732.7 KB
567. Psor-201_S85_out_dedup.bam - 5,426.6 KB
568. Psor-201_S85_out_realigned.bam - 5,421.1 KB
569. Psor-202_S5_out_dedup.bam - 3,120.1 KB
570. Psor-202_S5_out_realigned.bam - 3,112.9 KB
571. Psor-203_S16_out_dedup.bam - 3,282.6 KB
572. Psor-203_S16_out_realigned.bam - 3,274.8 KB
573. Psor-204_S28_out_dedup.bam - 3,446.0 KB
574. Psor-204_S28_out_realigned.bam - 3,440.7 KB
575. Psor-206_S39_out_dedup.bam - 3,680.3 KB
576. Psor-206_S39_out_realigned.bam - 3,668.1 KB
577. Psor-207_S51_out_dedup.bam - 11,041.5 KB
578. Psor-208_S63_out_dedup.bam - 15,048.0 KB
579. Psor-208_S63_out_realigned.bam - 15,036.9 KB
580. Psor-207_S51_out_realigned.bam - 11,055.7 KB
581. Psor-209_S74_out_dedup.bam - 10,094.4 KB
582. Psor-209_S74_out_realigned.bam - 10,098.3 KB
583. Psor-210_S86_out_dedup.bam - 9,766.8 KB
584. Psor-210_S86_out_realigned.bam - 9,762.2 KB
585. Psor-211_S6_out_dedup.bam - 9,873.6 KB
586. Psor-211_S6_out_realigned.bam - 9,855.6 KB
587. Psor-212_S17_out_dedup.bam - 9,594.5 KB
588. Psor-212_S17_out_realigned.bam - 9,576.0 KB
589. Psor-439_S126_out_dedup.bam - 5,996.8 KB
590. Psor-211_S6_out_realigned.bai - 0.5 KB
591. Psor-439_S126_out_realigned.bam - 5,982.5 KB
592. Psor-456_S127_out_dedup.bam - 4,783.6 KB
593. Psor-456_S127_out_realigned.bam - 4,783.6 KB
594. Psor-525_S130_out_dedup.bam - 14,574.4 KB
595. Psor-525_S130_out_realigned.bam - 14,558.2 KB
596. Psor-463_S128_out_dedup.bam - 1,808.7 KB
597. Psor-463_S128_out_realigned.bam - 1,802.7 KB
598. Psor-524_S129_out_dedup.bam - 5,436.0 KB
599. Psor-524_S129_out_realigned.bam - 5,427.8 KB
600. Psor-531_S135_out_dedup.bam - 11,493.9 KB
601. Psor-531_S135_out_realigned.bam - 11,503.8 KB
602. Psor-529_S133_out_dedup.bam - 4,508.0 KB
603. Psor-529_S133_out_realigned.bam - 4,494.1 KB
604. Psor-530_S134_out_dedup.bam - 1,604.3 KB
605. Psor-530_S134_out_realigned.bam - 1,599.9 KB
606. Psor-541_S138_out_dedup.bam - 9,154.7 KB
607. Psor-532_S136_out_realigned.bam - 5,141.6 KB
608. Psor-532_S136_out_dedup.bam - 5,156.0 KB
609. Psor-541_S138_out_realigned.bam - 9,130.3 KB
610. Psor-542_S139_out_dedup.bam - 4,160.7 KB
611. Psor-542_S139_out_realigned.bam - 4,158.9 KB
612. Psor-551_S196_out_dedup.bam - 6,499.5 KB
613. Psor-548_S141_out_dedup.bam - 4,707.0 KB
614. Psor-548_S141_out_realigned.bam - 4,693.5 KB
615. Psor-551_S196_out_realigned.bam - 6,498.0 KB
616. Psor-559_S208_out_dedup.bam - 10,700.8 KB
617. Psor-555_S202_out_dedup.bam - 7,336.2 KB
618. Psor-559_S208_out_realigned.bam - 10,692.8 KB
619. Psor-555_S202_out_realigned.bam - 7,335.2 KB
620. Psor-563_S214_out_dedup.bam - 8,380.3 KB
621. Psor-563_S214_out_realigned.bam - 8,369.8 KB
622. Psor-564_S220_out_dedup.bam - 8,123.9 KB
623. Psor-564_S220_out_realigned.bam - 8,120.4 KB
624. Psor-566_S140_out_realigned.bam - 2,262.2 KB
625. Psor-567_S226_out_dedup.bam - 8,753.4 KB
626. Psor-567_S226_out_realigned.bam - 8,739.6 KB
627. Psor-568_S232_out_dedup.bam - 10,197.8 KB
628. Psor-568_S232_out_realigned.bam - 10,177.9 KB
629. Psor-569_S191_out_dedup.bam - 3,197.0 KB
630. Psor-569_S191_out_realigned.bam - 3,196.8 KB
631. Psor-571_S197_out_dedup.bam - 1,836.0 KB
632. Psor-571_S197_out_realigned.bam - 1,834.8 KB
633. Psor-576_S215_out_dedup.bam - 6,666.7 KB
634. Psor-573_S203_out_dedup.bam - 1,570.6 KB
635. Psor-573_S203_out_realigned.bam - 1,569.1 KB
636. Psor-576_S215_out_realigned.bam - 6,668.2 KB
637. Psor-574_S209_out_dedup.bam - 2,190.0 KB
638. Psor-574_S209_out_realigned.bam - 2,190.1 KB
639. Psor-578_S221_out_dedup.bam - 8,494.5 KB
640. Psor-578_S221_out_realigned.bam - 8,494.2 KB
641. Psor-584_S227_out_dedup.bam - 8,280.9 KB
642. Psor-584_S227_out_realigned.bam - 8,283.9 KB
643. Psor-586_S192_out_dedup.bam - 9,850.5 KB
644. Psor-586_S192_out_realigned.bam - 9,843.8 KB
645. Psor-585_S233_out_dedup.bam - 5,389.2 KB
646. Psor-585_S233_out_realigned.bam - 5,388.3 KB
647. Psor-588_S198_out_dedup.bam - 9,096.0 KB
648. Psor-588_S198_out_realigned.bam - 9,089.8 KB
649. Psor-592_S204_out_dedup.bam - 6,496.3 KB
650. Psor-592_S204_out_realigned.bam - 6,486.6 KB
651. Psor-592_S204_out_realigned.bai - 0.3 KB
652. Psor-598_S210_out_dedup.bam - 7,728.2 KB
653. Psor-598_S210_out_realigned.bam - 7,724.8 KB
654. Psor-599_S216_out_dedup.bam - 7,626.9 KB
655. Psor-599_S216_out_realigned.bam - 7,613.2 KB
656. Psor-603_S222_out_dedup.bam - 6,888.1 KB
657. Psor-603_S222_out_realigned.bam - 6,875.6 KB
658. Psor-609_S73_out_dedup.bam - 10,010.9 KB
659. Psor-609_S73_out_realigned.bam - 9,999.1 KB
660. Psor-610_S228_out_realigned.bam - 9,398.9 KB
661. Psor-610_S228_out_dedup.bam - 9,420.5 KB
662. Psor-611_S234_out_dedup.bam - 6,402.8 KB
663. Psor-611_S234_out_realigned.bam - 6,392.4 KB
664. ERR1378585.fastq - 142,786.4 KB
665. ERR528826.fastq.gz - 93,329.6 KB
666. test_seq.fasta - 16.7 KB
667. B5513MT.bam - 7,723.2 KB
668. B5606MT.bam - 5,831.1 KB
669. AF346991.fasta - 16.5 KB
670. KSS1_C1b14.fasta - 16.9 KB
671. MR-B5606_exome_sorted.bam(1).bai - 3,971.4 KB
672. MR-B5606_exome_sorted.bam.bai - 3,971.4 KB
673. P1-B5507_exome_sorted.bam - 4,398.8 KB
674. CAMELMT.fasta - 16.5 KB
675. NGS Hydrops Panel Genes and Conditions Expanded.bed - 3.4 KB
676. CAP.20170926.by.gene.bed - 8.3 KB
677. CAP.20170926.by.gene.tab.txt - 80.0 KB
678. CAP.20170926.bed - 8.3 KB
679. CAP.20170926.tab.txt - 79.4 KB
680. seqdump.txt - 16.5 KB
681. WG09_chrM.sorted.dp.ir.recal.bam - 48,600.0 KB
682. WG10_chrM.sorted.dp.ir.recal.bam - 37,503.2 KB
683. WG08_chrM.sorted.dp.ir.recal.bam - 22,058.5 KB
684. WG06_chrM.sorted.dp.ir.recal.bam - 29,627.6 KB
685. WG07_chrM.sorted.dp.ir.recal.bam - 19,266.3 KB
686. WG05_chrM.sorted.dp.ir.recal.bam - 26,979.2 KB
687. WG03_chrM.sorted.dp.ir.recal.bam - 25,400.2 KB
688. WG01_chrM.sorted.dp.ir.recal.bam - 29,978.0 KB
689. WG02_chrM.sorted.dp.ir.recal.bam - 25,893.2 KB
690. MMD_PGW_chrM.sorted.dp.ir.recal.bam - 38,906.2 KB
691. MMD_KES_chrM.sorted.dp.ir.recal.bam - 47,054.8 KB
692. MMD_CJS_chrM.sorted.dp.ir.recal.bam - 44,945.6 KB
693. MMD_HYJ_chrM.sorted.dp.ir.recal.bam - 26,082.2 KB
694. KR34_chrM.sorted.dp.ir.recal.bam - 41,314.5 KB
695. KR35_chrM.sorted.dp.ir.recal.bam - 30,515.2 KB
696. KR33_chrM.sorted.dp.ir.recal.bam - 40,551.9 KB
697. KR32_chrM.sorted.dp.ir.recal.bam - 35,699.5 KB
698. KR25_chrM.sorted.dp.ir.recal.bam - 42,991.6 KB
699. KR22_chrM.sorted.dp.ir.recal.bam - 33,846.2 KB
700. KR18_chrM.sorted.dp.ir.recal.bam - 47,843.0 KB
701. KR10_chrM.sorted.dp.ir.recal.bam - 44,860.4 KB
702. KR19_chrM.sorted.dp.ir.recal.bam - 32,517.8 KB
703. KR14_chrM.sorted.dp.ir.recal.bam - 35,278.4 KB
704. KR6_chrM.sorted.dp.ir.recal.bam - 46,302.3 KB
705. KR2_chrM.sorted.dp.ir.recal.bam - 44,805.6 KB
706. KR3_chrM.sorted.dp.ir.recal.bam - 43,156.6 KB
707. KR8_chrM.sorted.dp.ir.recal.bam - 40,769.5 KB
708. Michael Bucc _ mito 2017 _CSV (1).csv - 5.2 KB
709. Michael Bucc _ mito 2017 _CSV .csv - 5.2 KB
710. AM2076_amgraft8.part.R2.fastq.gz - 47,296.7 KB
711. AM2076_amgraft8.part.R1.fastq.gz - 38,554.0 KB
712. ABM_HVS1_2_2011-03-22.seq - 0.4 KB
713. lbc10--lbc10.fastq - 28,832.5 KB
714. lbc12--lbc12.fastq - 22,505.4 KB
715. lbc11--lbc11.fastq - 16,247.6 KB
716. IonXpress_024.R_2014_04_16_12_48_07_user_SN1-91-2014.04.16_Ryan_Davis_PGMAGRF14-000113.fastq copy - 43,537.0 KB
717. prova.fasta - 1.2 KB
718. sequence(2).fasta - 16.5 KB
719. MF79.fasta - 16.5 KB
720. mito1(3).bam - 32,781.4 KB
721. MM161110GSmt_new.bam - 39,976.5 KB
722. mito1.bam - 739.5 KB
723. simulation100X.R1.fastq - 4,711.9 KB
724. simulation100X.R2.fastq - 4,711.9 KB
725. example2.fasta - 16.4 KB
726. example_mito1.bam - 3,156.5 KB
727. example_mito2.R1.fastq - 1,431.1 KB
728. example_mito2.R2.fastq - 1,431.1 KB
729. example1.fasta - 16.4 KB
730. example_mito2.bam - 1,017.7 KB

Download Result Files:
1. guest_201712072131_5747_summary.txt - 0.2 KB
2. guest_201801291741_8076_summary.txt - 0.7 KB
3. guest_201711272238_7521_summary.txt - 0.5 KB
4. guest_201802051546_3837.zip - 1.3 KB
5. guest_201801091619_3272_summary.txt - 0.2 KB
6. guest.zip - 1.3 KB
7. guest_201801250903_9275_summary.txt - 0.2 KB
8. guest_201802120620_2744_summary.txt - 0.3 KB
9. guest_201712290813_9820_summary.txt - 0.2 KB
10. guest_201712060129_6818.zip - 54.0 KB
11. guest_201801291741_8076.zip - 32,473.2 KB
12. mine_201711130332_5469.zip - 1.8 KB
13. guest_201707140917_1227.zip - 49.6 KB
14. guest_201802120620_2744.zip - 53.7 KB
15. guest_201707100938_6156_summary.txt - 0.3 KB
16. guest_201708172234_8515.zip - 18.2 KB
17. guest_201712210245_9318_summary.txt - 0.5 KB
18. guest_201708210957_8677_summary.txt - 0.3 KB
19. guest_20170714_9532.zip - 82.1 KB
20. guest_201712072131_5747.zip - 2.1 KB
21. guest_201712290813_9820.zip - 12.2 KB
22. guest_201711090334_2337_summary.txt - 0.3 KB
23. mtdna_summary.txt - 0.2 KB
24. guest_201801080149_1477_summary.txt - 0.2 KB
25. guest_201801080149_1477.zip - 20,832.5 KB
26. Sample_US.zip - 49,208.1 KB
27. guest_201711130332_5469.zip - 1.8 KB
28. guest_201707111054_7529.zip - 60.7 KB
29. guest_201802091518_8242_summary.txt - 0.3 KB
30. guest_201712250106_1276_summary.txt - 0.2 KB
31. guest_201709140903_3823_summary.txt - 0.3 KB
32. guest_201801261545_6260.zip - 7.9 KB
33. guest_201707200640_6824.zip - 48.5 KB
34. guest_201801261401_9890_summary.txt - 0.2 KB
35. guest_201707140909_6067.zip - 55.5 KB
36. guest_201707140609_6812.zip - 43.7 KB
37. guest_201707030824_4408_summary.txt - 0.2 KB
38. guest_201710261150_2255_summary.txt - 0.7 KB
39. guest_201711210333_6572.zip - 114.8 KB
40. guest_201712020618_2997.zip - 4.4 KB
41. guest_201712300506_6980_summary.txt - 0.3 KB
42. guest_201802101026_6124.zip - 89.3 KB
43. guest_201712031517_2453.zip - 6.5 KB
44. guest_201802030912_5701_summary.txt - 3.7 KB
45. guest_summary.txt - 0.2 KB
46. guest_201708211510_0330_summary.txt - 0.3 KB
47. guest_201712191141_5751.zip - 3,903,141.4 KB
48. guest_201707130926_6024.zip - 53.8 KB
49. guest_20170714_9531_summary.txt - 0.3 KB
50. guest_201706241509_8300_summary.txt - 0.3 KB
51. guest_201708171029_8014_summary.txt - 0.3 KB
52. guest_201710270431_5567.zip - 53.6 KB
53. guest_201707190712_7848_summary.txt - 0.3 KB
54. guest_201802101026_6124_summary.txt - 0.5 KB
55. mine_201711130332_5469_summary.txt - 0.5 KB
56. guest_201709141907_7545_summary.txt - 0.6 KB
57. guest_201707201007_7310.zip - 44.2 KB
58. guest_201710250432_9532.zip - 183.5 KB
59. guest_20170714_9530.zip - 41.5 KB
60. guest_201801261531_2427.zip - 2.4 KB
61. ramya_sam.zip - 13.0 KB
62. guest_201707201007_7310_summary.txt - 0.3 KB
63. guest_201708280310_4512.zip - 2.9 KB
64. guest_201802080552_3630.zip - 47.4 KB
65. guest_201706241509_8300.zip - 18.6 KB
66. guest_201707191612_9607_summary.txt - 28.0 KB
67. guest_201706271031_1283_summary.txt - 0.2 KB
68. guest_201712191141_5751_summary.txt - 0.7 KB
69. guest_201802080552_3630_summary.txt - 0.3 KB
70. mtdna.zip - 1.3 KB
71. guest_201707242111_4512_summary.txt - 0.3 KB
72. guest_201801291052_4042_summary.txt - 0.8 KB
73. guest_201801261545_6260_summary.txt - 0.2 KB
74. guest_201801291052_4042.zip - 681,207.5 KB
75. guest_201801251326_7634_summary.txt - 0.2 KB
76. guest_201711130332_5469_summary.txt - 0.5 KB
77. guest_201802091518_8242.zip - 53.7 KB
78. guest_201801251326_7634.zip - 6.1 KB
79. guest_201711280740_9908_summary.txt - 0.5 KB
80. guest_201712250106_1276.zip - 55.1 KB
81. guest_201712020618_2997_summary.txt - 0.2 KB
82. guest_201712210245_9318.zip - 57.7 KB
83. guest_201711280740_9908.zip - 114.8 KB
84. guest_201801091619_3272.zip - 4.9 KB
85. guest_201802051559_9235.zip - 1.3 KB
86. guest_201710261150_2255.zip - 183.5 KB
87. guest_201802051559_9235_summary.txt - 0.2 KB
88. guest_201712060129_6818_summary.txt - 0.3 KB
89. guest_201712031517_2453_summary.txt - 0.2 KB
90. guest_201802030912_5701.zip - 2,767.1 KB
91. guest_201802051546_3837_summary.txt - 0.2 KB
92. guest_201801261531_2427_summary.txt - 0.2 KB
93. guest_201801250755_9202_summary.txt - 0.3 KB
94. guest_201801261401_9890.zip - 6.1 KB
95. guest_201710250432_9532_summary.txt - 0.7 KB
96. guest_201712300506_6980.zip - 121.2 KB
97. guest_201801250532_3034_summary.txt - 0.2 KB
98. guest_201711090334_2337.zip - 86.0 KB
99. guest_201801250755_9202.zip - 55.6 KB
100. guest_201801250532_3034.zip - 2.8 KB
101. guest_201711210333_6572_summary.txt - 0.5 KB
102. AN_201801291144_7361_summary.txt - 0.8 KB
103. guest_201712140643_9622.zip - 2.8 KB
104. guest_201711272238_7521.zip - 58.5 KB
105. guest_201710270431_5567_summary.txt - 0.3 KB
106. guest_201801250903_9275.zip - 6.5 KB
107. AN_201801291144_7361.zip - 681,207.5 KB
108. guest_201712140643_9622_summary.txt - 0.2 KB

 Selected Samples:  (OR: them)

   Selected Results:       

  **To keep your data private from public users, please register and login

 Name your analysis:       Email when finished


 MToolBox Settings: Help file

Input format: Please limit to mitochondrial sequences, and bam file size under 50 MB.

Reference sequences:   hg19 (nuclear), and rCRS or RSRS (mitochondrial) reference sequences.

 Filtering and extra options

  Enable duplicate read removal by MarkDuplicates.

  Enable local realignment around 127 indels annotated in MITOMAP and HmtDB by GATK IndelRealigner.

 Minimum distance of ins/dels from read end bps

 Heteroplasmy threshold for FASTA consensus sequence

 

Citation:

Calabrese C, Simone D, Diroma MA, Santorsola M, Guttà C, Gasparre G, Picardi E, Pesole G, Attimonelli M.
MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing. Bioinformatics. 2014 Nov 1;30(21):3115-7, Pubmed

MToolBox standalone version and updates: https://github.com/mitoNGS/MToolBox

 


       For software support, please contact the author at: Maria Angela Diroma, or report website issues to: FeedbackMSeqDR webmaster