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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term ENSG00000174173:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000174173	TRMT10C	1	3	2	ENSG00000174173	ENST00000309922	ENSP00000312356	tRNA methyltransferase 10 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:26022]	3	101280706	101285290	1	q12.3	101280706	101285290	TRMT10C	TRMT10C-001	HGNC Symbol	HGNC transcript name	2	41.24	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	54931	26022	TRMT10C	NM_017819	27517

MSeqDR Master Exome Data Set M1: 15 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	3	101283792	C	G	ENST00000309922	ENSG00000174173	101280706	101285290	ENSP00000312356	TRMT10C	1	MRRP1_HUMAN	c.167C>G	p.P56R	non-syn	rs3762735	0.11835	G=1330/C=6866;G=381/C=3359;G=1711/C=10225	-	TOLERATED	B	-	het	221
2	3	101283792	C	G	ENST00000309922	ENSG00000174173	101280706	101285290	ENSP00000312356	TRMT10C	1	MRRP1_HUMAN	c.167C>G	p.P56R	non-syn	rs3762735	0.11835	G=1330/C=6866;G=381/C=3359;G=1711/C=10225	-	TOLERATED	B	-	hom	20
3	3	101283792	C	G	ENST00000495642	ENSG00000174173	101280706	101285290	ENSP00000419389	TRMT10C	1	-	c.167C>G	p.P56R	non-syn	rs3762735	0.11835	G=1330/C=6866;G=381/C=3359;G=1711/C=10225	-	TOLERATED	B	-	het	221
4	3	101283792	C	G	ENST00000495642	ENSG00000174173	101280706	101285290	ENSP00000419389	TRMT10C	1	-	c.167C>G	p.P56R	non-syn	rs3762735	0.11835	G=1330/C=6866;G=381/C=3359;G=1711/C=10225	-	TOLERATED	B	-	hom	20
5	3	101283898	A	G	ENST00000309922	ENSG00000174173	101280706	101285290	ENSP00000312356	TRMT10C	1	MRRP1_HUMAN	c.273A>G	p.L91L	syn	NA	-	-	-	-	-	-	het	1
6	3	101283898	A	G	ENST00000495642	ENSG00000174173	101280706	101285290	ENSP00000419389	TRMT10C	1	-	c.273A>G	p.L91L	syn	NA	-	-	-	-	-	-	het	1
7	3	101284414	A	G	ENST00000309922	ENSG00000174173	101280706	101285290	ENSP00000312356	TRMT10C	1	MRRP1_HUMAN	c.789A>G	p.Q263Q	syn	rs182835797	0.00091	-	lod=55:397	-	-	-	het	2
8	3	101284414	A	G	ENST00000495642	ENSG00000174173	101280706	101285290	ENSP00000419389	TRMT10C	1	-	c.789A>G	p.Q263Q	syn	rs182835797	0.00091	-	lod=55:397	-	-	-	het	2
9	3	101284875	C	T	ENST00000309922	ENSG00000174173	101280706	101285290	ENSP00000312356	TRMT10C	1	MRRP1_HUMAN	-	-	3'_UTR	rs146878542	0.0033	-	-	-	-	-	het	2
10	3	101284940	T	C	ENST00000309922	ENSG00000174173	101280706	101285290	ENSP00000312356	TRMT10C	1	MRRP1_HUMAN	-	-	3'_UTR	rs72948069	0.0565	-	-	-	-	-	het	4
11	3	101284940	T	C	ENST00000309922	ENSG00000174173	101280706	101285290	ENSP00000312356	TRMT10C	1	MRRP1_HUMAN	-	-	3'_UTR	rs72948069	0.0565	-	-	-	-	-	hom	1
12	3	101285086	C	T	ENST00000309922	ENSG00000174173	101280706	101285290	ENSP00000312356	TRMT10C	1	MRRP1_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
13	3	101285224	G	A	ENST00000309922	ENSG00000174173	101280706	101285290	ENSP00000312356	TRMT10C	1	MRRP1_HUMAN	-	-	3'_UTR	rs4683931	0.2073	-	-	-	-	-	het	57
14	3	101285224	G	A	ENST00000309922	ENSG00000174173	101280706	101285290	ENSP00000312356	TRMT10C	1	MRRP1_HUMAN	-	-	3'_UTR	rs4683931	0.2073	-	-	-	-	-	hom	3
15	3	101285259	T	C	ENST00000309922	ENSG00000174173	101280706	101285290	ENSP00000312356	TRMT10C	1	MRRP1_HUMAN	-	-	3'_UTR	rs146675871	0.0212	-	-	-	-	-	het	2

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding TRMT10C 3:101280706..101285290 region Gbrowse