Human Phenotype Ontology

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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

Grandparent Node:
Duplication of phalanx of hand (HP:0009997)

Parent Node:
Duplication of phalanx of 3rd finger (HP:0009959)

Parent Node:
Partial duplication of the phalanx of hand (HP:0009999)

..Starting node
..Partial duplication of the phalanges of the 3rd finger (HP:0009961)

Term ID:

9961

Name:

Partial duplication of the phalanges of the 3rd finger

Synonym:

Partial duplication of middle finger bones

Definition:

A partial duplication, depending on severity leading to a broad or bifid appearance, affecting one or more of the phalanges of the 3rd finger. As opposed to a complete duplication there is still a variable degree of fusion between the duplicated bones.

Comments:

Reference:

HP:0009961

Genes and Diseases:

Child Nodes:

........

Partial duplication of the distal phalanx of the 3rd finger (HP:0009968)

........

Partial duplication of the middle phalanx of the 3rd finger (HP:0009969)

........

Partial duplication of the proximal phalanx of the 3rd finger (HP:0009970)

Sister Nodes:

Partial duplication of the distal phalanges of the hand (HP:0010004)

Partial duplication of the middle phalanges of the hand (HP:0010005)

Partial duplication of the phalanges of the 2nd finger (HP:0009956)

Partial duplication of the phalanges of the 4th finger (HP:0009974)

Partial duplication of the phalanges of the 5th finger (HP:0009987)

Partial duplication of the proximal phalanges of the hand (HP:0010003)

Partial duplication of thumb phalanx (HP:0009944)

Input	HPO ID	HPO term	Distance	Gene	Gene id entrez	HGNC ID	DiseaseId	DiseaseName	Frequency	ClinVar variants
HPO disease - gene - phenotype typical associations:
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0009961	HP:0009961	Partial duplication of the phalanges of the 3rd finger	0	CHSY1 CL E G H	22856	17198	ORPHA:363417	Temtamy preaxial brachydactyly syndrome		16
HP:0009961	HP:0009961	Partial duplication of the phalanges of the 3rd finger	0	FGFR2 CL E G H	2263	3689	OMIM:101400	Saethre-Chotzen syndrome		175
HP:0009961	HP:0009961	Partial duplication of the phalanges of the 3rd finger	0	TWIST1 CL E G H	7291	12428	OMIM:101400	Saethre-Chotzen syndrome		18
HP:0009961	HP:0009969	Partial duplication of the middle phalanx of the 3rd finger	1	CL E G H
HP:0009961	HP:0009970	Partial duplication of the proximal phalanx of the 3rd finger	1	CHSY1 CL E G H	22856	17198	ORPHA:363417	Temtamy preaxial brachydactyly syndrome	HP:0040282 - Frequent	16
HP:0009961	HP:0009968	Partial duplication of the distal phalanx of the 3rd finger	1	FGFR2 CL E G H	2263	3689	OMIM:101400	Saethre-Chotzen syndrome	.	175
HP:0009961	HP:0009968	Partial duplication of the distal phalanx of the 3rd finger	1	TWIST1 CL E G H	7291	12428	OMIM:101400	Saethre-Chotzen syndrome	.	18

Genes (3) :CHSY1 FGFR2 TWIST1

Diseases (2) :ORPHA:363417 OMIM:101400

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.

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