Human Phenotype Ontology 
Grandparent Node:
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Abnormal upper lip morphology (HP:0000177)help
Grandparent Node:
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Cleft lip (HP:0410030)help
Parent Node:
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Cleft upper lip (HP:0000204)help
..Starting node
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Median cleft lip (HP:0000161)help
Term ID: 161
Name: Median cleft lip
Synonym: Central cleft upper lip; Midline cleft lip
Definition: A type of cleft lip presenting as a midline (median) gap in the upper lip.
Comments:
Reference: HP:0000161
Genes and Diseases:
 
       Child Nodes:
........expandMedian cleft lip and palate (HP:0008501) help

 Sister Nodes: 
..expandIncomplete cleft of the upper lip (HP:0011340) help
..expandNon-midline cleft lip (HP:0100335) help
..expandSubmucous cleft lip (HP:0009101) help
InputHPO IDHPO termDistanceGeneGene id entrezHGNC IDDiseaseIdDiseaseNameFrequencyOnsetHGMD variantsClinVar variants
 
HPO disease - gene - phenotype typical associations:
 
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0000161HP:0000161Median cleft lip0ALX3 CL E G H257449OMIM:136760Frontonasal dysplasia 1.9
HP:0000161HP:0000161Median cleft lip0CDON CL E G H5093717104ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent200
HP:0000161HP:0000161Median cleft lip0CDON CL E G H5093717104ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent200
HP:0000161HP:0000161Median cleft lip0CDON CL E G H5093717104ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent200
HP:0000161HP:0000161Median cleft lip0CDON CL E G H5093717104ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent200
HP:0000161HP:0000161Median cleft lip0CILK1 CL E G H2285821219OMIM:612651ENDOCRINE-CEREBROOSTEODYSPLASIA
HP:0000161HP:0000161Median cleft lip0DDX59 CL E G H8347925360ORPHA:2919Orofaciodigital syndrome type 5HP:0040281 - Very frequent2
HP:0000161HP:0000161Median cleft lip0DDX59 CL E G H8347925360OMIM:174300Orofaciodigital syndrome V.2
HP:0000161HP:0000161Median cleft lip0DISP1 CL E G H8497619711ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent22
HP:0000161HP:0000161Median cleft lip0DISP1 CL E G H8497619711ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent22
HP:0000161HP:0000161Median cleft lip0DISP1 CL E G H8497619711ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent22
HP:0000161HP:0000161Median cleft lip0DISP1 CL E G H8497619711ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent22
HP:0000161HP:0000161Median cleft lip0DLL1 CL E G H285142908ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent3
HP:0000161HP:0000161Median cleft lip0DLL1 CL E G H285142908ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent3
HP:0000161HP:0000161Median cleft lip0DLL1 CL E G H285142908ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent3
HP:0000161HP:0000161Median cleft lip0DLL1 CL E G H285142908ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent3
HP:0000161HP:0000161Median cleft lip0DVL1 CL E G H18553084ORPHA:3107Autosomal dominant Robinow syndrome14
HP:0000161HP:0000161Median cleft lip0DVL3 CL E G H18573087ORPHA:3107Autosomal dominant Robinow syndrome5
HP:0000161HP:0000161Median cleft lip0DYNC2LI1 CL E G H5162624595OMIM:617088Short-rib thoracic dysplasia 15 with polydactyly7
HP:0000161HP:0000161Median cleft lip0EPG5 CL E G H5772429331OMIM:242840Vici syndrome40
HP:0000161HP:0000161Median cleft lip0FAM20C CL E G H5697522140ORPHA:1832Lethal osteosclerotic bone dysplasia35
HP:0000161HP:0000161Median cleft lip0FGF8 CL E G H22533686ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent17
HP:0000161HP:0000161Median cleft lip0FGF8 CL E G H22533686ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent17
HP:0000161HP:0000161Median cleft lip0FGF8 CL E G H22533686ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent17
HP:0000161HP:0000161Median cleft lip0FGF8 CL E G H22533686ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent17
HP:0000161HP:0000161Median cleft lip0FGFR1 CL E G H22603688ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent172
HP:0000161HP:0000161Median cleft lip0FGFR1 CL E G H22603688ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent172
HP:0000161HP:0000161Median cleft lip0FOXA2 CL E G H31705022ORPHA:95494Combined pituitary hormone deficiencies, genetic forms
HP:0000161HP:0000161Median cleft lip0FOXH1 CL E G H89283814ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent48
HP:0000161HP:0000161Median cleft lip0FOXH1 CL E G H89283814ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent48
HP:0000161HP:0000161Median cleft lip0FOXH1 CL E G H89283814ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent48
HP:0000161HP:0000161Median cleft lip0FOXH1 CL E G H89283814ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent48
HP:0000161HP:0000161Median cleft lip0FZD2 CL E G H25354040ORPHA:3107Autosomal dominant Robinow syndrome
HP:0000161HP:0000161Median cleft lip0GAS1 CL E G H26194165ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent2
HP:0000161HP:0000161Median cleft lip0GAS1 CL E G H26194165ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent2
HP:0000161HP:0000161Median cleft lip0GAS1 CL E G H26194165ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent2
HP:0000161HP:0000161Median cleft lip0GAS1 CL E G H26194165ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent2
HP:0000161HP:0000161Median cleft lip0GJA1 CL E G H26974274ORPHA:2710Oculodentodigital dysplasiaHP:0040282 - Frequent68
HP:0000161HP:0000161Median cleft lip0GLI2 CL E G H27364318ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent173
HP:0000161HP:0000161Median cleft lip0GLI2 CL E G H27364318ORPHA:95494Combined pituitary hormone deficiencies, genetic forms173
HP:0000161HP:0000161Median cleft lip0GLI2 CL E G H27364318ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent173
HP:0000161HP:0000161Median cleft lip0GLI2 CL E G H27364318ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent173
HP:0000161HP:0000161Median cleft lip0GLI2 CL E G H27364318ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent173
HP:0000161HP:0000161Median cleft lip0H4C3 CL E G H83644787OMIM:619758TESSADORI-VAN HAAFTEN NEURODEVELOPMENTAL SYNDROME 1; TEVANED1
HP:0000161HP:0000161Median cleft lip0HESX1 CL E G H88204877ORPHA:95494Combined pituitary hormone deficiencies, genetic forms21
HP:0000161HP:0000161Median cleft lip0HYLS1 CL E G H21984426558OMIM:236680Hydrolethalus syndrome 1.31
HP:0000161HP:0000161Median cleft lip0INTU CL E G H2715229239OMIM:617926OROFACIODIGITAL SYNDROME XVII; OFD17
HP:0000161HP:0000161Median cleft lip0LHX4 CL E G H8988421734ORPHA:95494Combined pituitary hormone deficiencies, genetic forms43
HP:0000161HP:0000161Median cleft lip0NEK1 CL E G H47507744ORPHA:2751Orofaciodigital syndrome type 2HP:0040282 - Frequent101
HP:0000161HP:0000161Median cleft lip0NEK1 CL E G H47507744OMIM:263520Short-Rib thoracic dysplasia 6 with or without polydactyly.101
HP:0000161HP:0000161Median cleft lip0NODAL CL E G H48387865ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent45
HP:0000161HP:0000161Median cleft lip0NODAL CL E G H48387865ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent45
HP:0000161HP:0000161Median cleft lip0NODAL CL E G H48387865ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent45
HP:0000161HP:0000161Median cleft lip0NODAL CL E G H48387865ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent45
HP:0000161HP:0000161Median cleft lip0NUAK2 CL E G H8178829558OMIM:619452ANENCEPHALY 2; ANPH2
HP:0000161HP:0000161Median cleft lip0OFD1 CL E G H84812567OMIM:311200Orofaciodigital syndrome I.201
HP:0000161HP:0000161Median cleft lip0OFD1 CL E G H84812567ORPHA:2750Orofaciodigital syndrome type 1HP:0040281 - Very frequent201
HP:0000161HP:0000161Median cleft lip0OTX2 CL E G H50158522ORPHA:95494Combined pituitary hormone deficiencies, genetic forms41
HP:0000161HP:0000161Median cleft lip0PIGN CL E G H235568967ORPHA:2059Fryns syndromeHP:0040282 - Frequent37
HP:0000161HP:0000161Median cleft lip0PLCH1 CL E G H2300729185OMIM:619895
HP:0000161HP:0000161Median cleft lip0PLCH1 CL E G H2300729185ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent
HP:0000161HP:0000161Median cleft lip0POU1F1 CL E G H54499210ORPHA:95494Combined pituitary hormone deficiencies, genetic forms36
HP:0000161HP:0000161Median cleft lip0PROP1 CL E G H56269455ORPHA:95494Combined pituitary hormone deficiencies, genetic forms54
HP:0000161HP:0000161Median cleft lip0PTCH1 CL E G H57279585ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent665
HP:0000161HP:0000161Median cleft lip0PTCH1 CL E G H57279585OMIM:610828Holoprosencephaly 7665
HP:0000161HP:0000161Median cleft lip0PTCH1 CL E G H57279585ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent665
HP:0000161HP:0000161Median cleft lip0PTCH1 CL E G H57279585ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent665
HP:0000161HP:0000161Median cleft lip0PTCH1 CL E G H57279585ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent665
HP:0000161HP:0000161Median cleft lip0RIPK4 CL E G H54101496ORPHA:1234Bartsocas-Papas syndromeHP:0040281 - Very frequent69
HP:0000161HP:0000161Median cleft lip0SHH CL E G H646910848ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent67
HP:0000161HP:0000161Median cleft lip0SHH CL E G H646910848ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent67
HP:0000161HP:0000161Median cleft lip0SHH CL E G H646910848ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent67
HP:0000161HP:0000161Median cleft lip0SHH CL E G H646910848ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent67
HP:0000161HP:0000161Median cleft lip0SIX3 CL E G H649610889ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent32
HP:0000161HP:0000161Median cleft lip0SIX3 CL E G H649610889OMIM:157170Holoprosencephaly 232
HP:0000161HP:0000161Median cleft lip0SIX3 CL E G H649610889ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent32
HP:0000161HP:0000161Median cleft lip0SIX3 CL E G H649610889ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent32
HP:0000161HP:0000161Median cleft lip0SIX3 CL E G H649610889ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent32
HP:0000161HP:0000161Median cleft lip0SLC2A10 CL E G H8103113444ORPHA:3342Arterial tortuosity syndrome178
HP:0000161HP:0000161Median cleft lip0SMC1A CL E G H824311111ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent135
HP:0000161HP:0000161Median cleft lip0SMO CL E G H660811119OMIM:241800Hypothalamic hamartomascongenital hypothalamic hamartoma syndrome, included.22
HP:0000161HP:0000161Median cleft lip0STAG2 CL E G H1073511355ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent1
HP:0000161HP:0000161Median cleft lip0STAG2 CL E G H1073511355OMIM:301043HOLOPROSENCEPHALY 13, X-LINKED; HPE131
HP:0000161HP:0000161Median cleft lip0STAG2 CL E G H1073511355ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent1
HP:0000161HP:0000161Median cleft lip0STIL CL E G H649110879ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent99
HP:0000161HP:0000161Median cleft lip0STIL CL E G H649110879ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent99
HP:0000161HP:0000161Median cleft lip0STIL CL E G H649110879ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent99
HP:0000161HP:0000161Median cleft lip0STIL CL E G H649110879ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent99
HP:0000161HP:0000161Median cleft lip0TCTN3 CL E G H2612324519ORPHA:2753Orofaciodigital syndrome type 4HP:0040281 - Very frequent31
HP:0000161HP:0000161Median cleft lip0TDGF1 CL E G H699711701ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent1
HP:0000161HP:0000161Median cleft lip0TDGF1 CL E G H699711701ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent1
HP:0000161HP:0000161Median cleft lip0TDGF1 CL E G H699711701ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent1
HP:0000161HP:0000161Median cleft lip0TDGF1 CL E G H699711701ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent1
HP:0000161HP:0000161Median cleft lip0TGIF1 CL E G H705011776ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent32
HP:0000161HP:0000161Median cleft lip0TGIF1 CL E G H705011776OMIM:142946Holoprosencephaly 4.32
HP:0000161HP:0000161Median cleft lip0TGIF1 CL E G H705011776ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent32
HP:0000161HP:0000161Median cleft lip0TGIF1 CL E G H705011776ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent32
HP:0000161HP:0000161Median cleft lip0TGIF1 CL E G H705011776ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent32
HP:0000161HP:0000161Median cleft lip0WLS CL E G H7997130238OMIM:619648ZAKI SYNDROME; ZKS
HP:0000161HP:0000161Median cleft lip0WNT5A CL E G H747412784ORPHA:3107Autosomal dominant Robinow syndrome98
HP:0000161HP:0000161Median cleft lip0ZIC2 CL E G H754612873ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent34
HP:0000161HP:0000161Median cleft lip0ZIC2 CL E G H754612873ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent34
HP:0000161HP:0000161Median cleft lip0ZIC2 CL E G H754612873ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent34
HP:0000161HP:0000161Median cleft lip0ZIC2 CL E G H754612873ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent34
HP:0000161HP:0000161Median cleft lip0ZSWIM6 CL E G H5768829316ORPHA:1827Acromelic frontonasal dysplasiaHP:0040282 - Frequent5
HP:0000161HP:0008501Median cleft lip and palate1DVL1 CL E G H18553084ORPHA:3107Autosomal dominant Robinow syndromeHP:0040282 - Frequent14
HP:0000161HP:0008501Median cleft lip and palate1DVL3 CL E G H18573087ORPHA:3107Autosomal dominant Robinow syndromeHP:0040282 - Frequent5
HP:0000161HP:0008501Median cleft lip and palate1FAM20C CL E G H5697522140ORPHA:1832Lethal osteosclerotic bone dysplasiaHP:0040281 - Very frequent35
HP:0000161HP:0008501Median cleft lip and palate1FOXA2 CL E G H31705022ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040284 - Very rare
HP:0000161HP:0008501Median cleft lip and palate1FZD2 CL E G H25354040ORPHA:3107Autosomal dominant Robinow syndromeHP:0040282 - Frequent
HP:0000161HP:0008501Median cleft lip and palate1GLI2 CL E G H27364318ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040284 - Very rare173
HP:0000161HP:0034185Median pseudocleft lip1H4C3 CL E G H83644787OMIM:619758TESSADORI-VAN HAAFTEN NEURODEVELOPMENTAL SYNDROME 1; TEVANED1
HP:0000161HP:0008501Median cleft lip and palate1HESX1 CL E G H88204877ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040284 - Very rare21
HP:0000161HP:0008501Median cleft lip and palate1LHX4 CL E G H8988421734ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040284 - Very rare43
HP:0000161HP:0008501Median cleft lip and palate1OTX2 CL E G H50158522ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040284 - Very rare41
HP:0000161HP:0008501Median cleft lip and palate1POU1F1 CL E G H54499210ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040284 - Very rare36
HP:0000161HP:0008501Median cleft lip and palate1PROP1 CL E G H56269455ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040284 - Very rare54
HP:0000161HP:0008501Median cleft lip and palate1PTCH1 CL E G H57279585OMIM:610828Holoprosencephaly 7665
HP:0000161HP:0008501Median cleft lip and palate1SIX3 CL E G H649610889OMIM:157170Holoprosencephaly 2.32
HP:0000161HP:0008501Median cleft lip and palate1SLC2A10 CL E G H8103113444ORPHA:3342Arterial tortuosity syndromeHP:0040282 - Frequent178
HP:0000161HP:0008501Median cleft lip and palate1TGIF1 CL E G H705011776OMIM:142946Holoprosencephaly 4.32
HP:0000161HP:0034185Median pseudocleft lip1WLS CL E G H7997130238OMIM:619648ZAKI SYNDROME; ZKS
HP:0000161HP:0008501Median cleft lip and palate1WNT5A CL E G H747412784ORPHA:3107Autosomal dominant Robinow syndromeHP:0040282 - Frequent98


Genes (49) :ALX3 CDON CILK1 DDX59 DISP1 DLL1 DVL1 DVL3 DYNC2LI1 EPG5 FAM20C FGF8 FGFR1 FOXA2 FOXH1 FZD2 GAS1 GJA1 GLI2 H4C3 HESX1 HYLS1 INTU LHX4 NEK1 NODAL NUAK2 OFD1 OTX2 PIGN PLCH1 POU1F1 PROP1 PTCH1 RIPK4 SHH SIX3 SLC2A10 SMC1A SMO STAG2 STIL TCTN3 TDGF1 TGIF1 WLS WNT5A ZIC2 ZSWIM6

Diseases (34) :OMIM:136760 ORPHA:93925 ORPHA:93924 ORPHA:93926 ORPHA:220386 OMIM:612651 ORPHA:2919 OMIM:174300 ORPHA:3107 OMIM:617088 OMIM:242840 ORPHA:1832 ORPHA:95494 ORPHA:2710 OMIM:619758 OMIM:236680 OMIM:617926 ORPHA:2751 OMIM:263520 OMIM:619452 OMIM:311200 ORPHA:2750 ORPHA:2059 OMIM:619895 OMIM:610828 ORPHA:1234 OMIM:157170 ORPHA:3342 OMIM:241800 OMIM:301043 ORPHA:2753 OMIM:142946 OMIM:619648 ORPHA:1827
 

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.