Human Phenotype Ontology 
Grandparent Node:
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Abnormality of male external genitalia (HP:0000032)help
Grandparent Node:
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Abnormality of the lower urinary tract (HP:0010936)help
Parent Node:
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Abnormal vagina morphology (HP:0000142)help
Parent Node:
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Abnormality of the urethra (HP:0000795)help
..Starting node
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Urogenital sinus anomaly (HP:0100779)help
Term ID: 100779
Name: Urogenital sinus anomaly
Synonym:
Definition: A rare birth defect in women where the urethra and vagina both open into a common channel.
Comments:
Reference: HP:0100779
Genes and Diseases:
 
       Child Nodes:

 Sister Nodes: 
..expandCongenital megalourethra (HP:0030723) help
..expandDisplacement of the urethral meatus (HP:0100627) help
..expandDistal urethral duplication (HP:0008706) help
..expandNeoplasm of the urethra (HP:0100517) help
..expandPatulous urethra (HP:0025417) help
..expandUrethral atresia (HP:0000068) help
..expandUrethral diverticulum (HP:0008722) help
..expandUrethral fistula (HP:0010480) help
..expandUrethral obstruction (HP:0000796) help
..expandUrethritis (HP:0500006) help
..expandUrethrocele (HP:0100821) help
InputHPO IDHPO termDistanceGeneGene id entrezHGNC IDDiseaseIdDiseaseNameFrequencyOnsetHGMD variantsClinVar variants
 
HPO disease - gene - phenotype typical associations:
 
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0100779HP:0100779Urogenital sinus anomaly0AR CL E G H367644ORPHA:90797Partial androgen insensitivity syndromeHP:0040283 - Occasional125
HP:0100779HP:0100779Urogenital sinus anomaly0CHRM3 CL E G H11311952ORPHA:2970Prune belly syndromeHP:0040283 - Occasional4
HP:0100779HP:0100779Urogenital sinus anomaly0CYP11A1 CL E G H15832590ORPHA:16855846,XY disorder of sex development-adrenal insufficiency due to CYP11A1 deficiencyHP:0040281 - Very frequent31
HP:0100779HP:0100779Urogenital sinus anomaly0CYP11A1 CL E G H15832590ORPHA:289548Inherited isolated adrenal insufficiency due to partial CYP11A1 deficiencyHP:0040281 - Very frequent31
HP:0100779HP:0100779Urogenital sinus anomaly0DHX37 CL E G H5764717210OMIM:27325046, XY sex reversal 112
HP:0100779HP:0100779Urogenital sinus anomaly0DHX37 CL E G H5764717210ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent2
HP:0100779HP:0100779Urogenital sinus anomaly0DMRT3 CL E G H5852413909ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent1
HP:0100779HP:0100779Urogenital sinus anomaly0GATA4 CL E G H26264173ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent87
HP:0100779HP:0100779Urogenital sinus anomaly0MAP3K1 CL E G H42146848ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent13
HP:0100779HP:0100779Urogenital sinus anomaly0MKKS CL E G H81957108ORPHA:2473McKusick-Kaufman syndromeHP:0040282 - Frequent69
HP:0100779HP:0100779Urogenital sinus anomaly0NR0B1 CL E G H1907960ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent48
HP:0100779HP:0100779Urogenital sinus anomaly0NR2F2 CL E G H70267976OMIM:61890146,XX SEX REVERSAL 5; SRXX513
HP:0100779HP:0100779Urogenital sinus anomaly0NR5A1 CL E G H25167983ORPHA:213846,XX ovotesticular disorder of sex developmentHP:0040281 - Very frequent38
HP:0100779HP:0100779Urogenital sinus anomaly0NR5A1 CL E G H25167983ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent38
HP:0100779HP:0100779Urogenital sinus anomaly0PPP1R12A CL E G H46597618OMIM:618820GENITOURINARY AND/OR BRAIN MALFORMATION SYNDROME; GUBS
HP:0100779HP:0100779Urogenital sinus anomaly0SOX9 CL E G H666211204ORPHA:213846,XX ovotesticular disorder of sex developmentHP:0040281 - Very frequent109
HP:0100779HP:0100779Urogenital sinus anomaly0SOX9 CL E G H666211204ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent109
HP:0100779HP:0100779Urogenital sinus anomaly0SRD5A2 CL E G H671611285ORPHA:75346,XY disorder of sex development due to 5-alpha-reductase 2 deficiencyHP:0040281 - Very frequent86
HP:0100779HP:0100779Urogenital sinus anomaly0SRY CL E G H673611311ORPHA:177245,X/46,XY mixed gonadal dysgenesisHP:0040282 - Frequent23
HP:0100779HP:0100779Urogenital sinus anomaly0SRY CL E G H673611311ORPHA:213846,XX ovotesticular disorder of sex developmentHP:0040281 - Very frequent23
HP:0100779HP:0100779Urogenital sinus anomaly0SRY CL E G H673611311ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent23
HP:0100779HP:0100779Urogenital sinus anomaly0VAMP7 CL E G H684511486ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent2
HP:0100779HP:0100779Urogenital sinus anomaly0WT1 CL E G H749012796ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent177
HP:0100779HP:0100779Urogenital sinus anomaly0WWOX CL E G H5174112799ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent149
HP:0100779HP:0100779Urogenital sinus anomaly0ZFPM2 CL E G H2341416700ORPHA:25151046,XY partial gonadal dysgenesisHP:0040281 - Very frequent31


Genes (19) :AR CHRM3 CYP11A1 DHX37 DMRT3 GATA4 MAP3K1 MKKS NR0B1 NR2F2 NR5A1 PPP1R12A SOX9 SRD5A2 SRY VAMP7 WT1 WWOX ZFPM2

Diseases (12) :ORPHA:90797 ORPHA:2970 ORPHA:168558 ORPHA:289548 OMIM:273250 ORPHA:251510 ORPHA:2473 OMIM:618901 ORPHA:2138 OMIM:618820 ORPHA:753 ORPHA:1772
 

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.