Variation_Name | GeneID | GeneSymbol | ClinicalSignificance | dbSNP | RCVaccession | TestedInGTR | PhenotypeIDs | Chromosome | Start | Stop | HGVS_c | HGVS_p | HGVS_g | OtherIDs | Disease_ClinVar | Disease_hgmd | NM_006920.4(SCN1A):c.5764delC (p.Arg1922Glufs) | -1 | - | Pathogenic | 587780446 | RCV000118238; | N | MedGen:C1858673,OMIM:604403 | 2 | 166847988 | 166847988 | NM_006920.4:c.5764delC | NP_008851.3:p.Arg1922Glufs | NC_000002.11:g.166847988delG | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_006920.4(SCN1A):c.5506delC (p.Leu1836Serfs) | -1 | - | Pathogenic | 398123599 | RCV000176630; RCV000079590; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166848246 | 166848246 | NM_006920.4:c.5506delC | NP_008851.3:p.Leu1836Serfs | NC_000002.11:g.166848246delG | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.5108T>C (p.Met1703Thr) | -1 | - | Likely pathogenic | 121917949 | RCV000176631; RCV000079588; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166848644 | 166848644 | NM_006920.4:c.5108T>C | NP_008851.3:p.Met1703Thr | NC_000002.11:g.166848644A>C,NC_000002.11:g.166848644A>G | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.5093C>T (p.Thr1698Ile) | -1 | - | Pathogenic | 121918629 | RCV000013754; RCV000013755; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166848659 | 166848659 | NM_006920.4:c.5093C>T | NP_008851.3:p.Thr1698Ile | NC_000002.11:g.166848659G>A | OMIM Allelic Variant:182389.0013,UniProtKB (variants):VAR_029717 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.4935C>G (p.Ile1645Met) | -1 | - | Pathogenic | 121917955 | RCV000059433; RCV000013746; | N | MedGen:C1858672,OMIM:604233; MedGen:C1858673,OMIM:604403 | 2 | 166848817 | 166848817 | NM_006920.4:c.4935C>G | NP_008851.3:p.Ile1645Met | NC_000002.11:g.166848817G>C | OMIM Allelic Variant:182389.0005,UniProtKB (variants):VAR_014273 | C1858672 604233 Generalized epilepsy with febrile seizures plus, type 1; C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_006920.4(SCN1A):c.4910G>A (p.Arg1637His) | -1 | - | Pathogenic | 121918622 | RCV000059521; RCV000013742; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166848842 | 166848842 | NM_006920.4:c.4910G>A | NP_008851.3:p.Arg1637His | NC_000002.11:g.166848842C>A,NC_000002.11:g.166848842C>T | OMIM Allelic Variant:182389.0001,UniProtKB (variants):VAR_010111 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.4874G>A (p.Arg1625Gln) | -1 | - | Likely pathogenic;Pathogenic | 121917995 | RCV000059431; RCV000176634; RCV000188983; | N | MedGen:C1853372,OMIM:606369; MedGen:C1858673,OMIM:604403; MedGen:CN221809 | 2 | 166848878 | 166848878 | NM_006920.4:c.4874G>A | NP_008851.3:p.Arg1625Gln | NC_000002.11:g.166848878C>T | UniProtKB (variants):VAR_043369 | C1853372 606369 Epileptic encephalopathy Lennox-Gastaut type; C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; CN221809 not provided | | |
NM_006920.4(SCN1A):c.4798G>T (p.Val1600Phe) | -1 | - | Pathogenic | 121918630 | RCV000013756; RCV000013757; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166850677 | 166850677 | NM_006920.4:c.4798G>T | NP_008851.3:p.Val1600Phe | NC_000002.11:g.166850677C>A | OMIM Allelic Variant:182389.0014,UniProtKB (variants):VAR_029706 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.4411A>C (p.Ile1471Leu) | -1 | - | Likely pathogenic | 794729200 | RCV000184019; | N | MedGen:C1858673,OMIM:604403 | 2 | 166854580 | 166854580 | NM_006920.4:c.4411A>C | NP_008851.3:p.Ile1471Leu | NC_000002.11:g.166854580T>G | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_006920.4(SCN1A):c.4251+2T>C | -1 | - | Pathogenic | 398123595 | RCV000176178; RCV000079583; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166858980 | 166858980 | NM_006920.4:c.4251+2T>C | | NC_000002.11:g.166858980A>G | HGMD:CS1211442 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.4250T>C (p.Val1417Ala) | -1 | - | Pathogenic | 121918627 | RCV000059508; RCV000013752; | N | MedGen:C1858672,OMIM:604233; MedGen:C1858673,OMIM:604403 | 2 | 166858983 | 166858983 | NM_006920.4:c.4250T>C | NP_008851.3:p.Val1417Ala | NC_000002.11:g.166858983A>G | OMIM Allelic Variant:182389.0011,UniProtKB (variants):VAR_029700 | C1858672 604233 Generalized epilepsy with febrile seizures plus, type 1; C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_006920.4(SCN1A):c.4186C>T (p.Arg1396Ter) | -1 | - | Pathogenic | 398123593 | RCV000176177; RCV000079581; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166859047 | 166859047 | NM_006920.4:c.4186C>T | NP_008851.3:p.Arg1396Ter | NC_000002.11:g.166859047G>A | HGMD:CM024308 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.4024G>C (p.Val1342Leu) | -1 | - | Pathogenic | 121917954 | RCV000059409; RCV000013745; | N | MedGen:C1858672,OMIM:604233; MedGen:C1858673,OMIM:604403 | 2 | 166859209 | 166859209 | NM_006920.4:c.4024G>C | NP_008851.3:p.Val1342Leu | NC_000002.11:g.166859209C>G | OMIM Allelic Variant:182389.0004,UniProtKB (variants):VAR_014272 | C1858672 604233 Generalized epilepsy with febrile seizures plus, type 1; C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_006920.4(SCN1A):c.3776A>C (p.Lys1259Thr) | -1 | - | Pathogenic | 121918626 | RCV000059501; RCV000013751; | N | MedGen:C1858672,OMIM:604233; MedGen:C1858673,OMIM:604403 | 2 | 166868689 | 166868689 | NM_006920.4:c.3776A>C | NP_008851.3:p.Lys1259Thr | NC_000002.11:g.166868689T>G | OMIM Allelic Variant:182389.0010,UniProtKB (variants):VAR_014271 | C1858672 604233 Generalized epilepsy with febrile seizures plus, type 1; C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_001165963.1(SCN1A):c.3733C>T (p.Arg1245Ter) | -1 | - | Pathogenic | 727504136 | RCV000153888; RCV000153889; RCV000188925; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403; MedGen:CN221809 | 2 | 166868765 | 166868765 | NM_001165963.1:c.3733C>T | NP_001159435.1:p.Arg1245Ter | NC_000002.11:g.166868765G>A | HGMD:CM031739 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; CN221809 not provided; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.3613G>A (p.Glu1205Lys) | -1 | - | Likely pathogenic | 398123590 | RCV000175286; RCV000079575; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166870313 | 166870313 | NM_006920.4:c.3613G>A | NP_008851.3:p.Glu1205Lys | NC_000002.11:g.166870313C>T | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.3577T>C (p.Trp1193Arg) | -1 | - | Pathogenic | 121917930 | RCV000059402; RCV000013747; | N | MedGen:C1858672,OMIM:604233; MedGen:C1858673,OMIM:604403 | 2 | 166870349 | 166870349 | NM_006920.4:c.3577T>C | NP_008851.3:p.Trp1193Arg | NC_000002.11:g.166870349A>G | OMIM Allelic Variant:182389.0006,UniProtKB (variants):VAR_014270 | C1858672 604233 Generalized epilepsy with febrile seizures plus, type 1; C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_006920.4(SCN1A):c.2923_2924delCT (p.Phe976Serfs) | 6323 | SCN1A | Pathogenic | 794729207 | RCV000184026; | N | MedGen:C1858673,OMIM:604403 | 2 | 166893030 | 166893031 | NM_006920.4:c.2923_2924delCT | NP_008851.3:p.Phe976Serfs | NC_000002.11:g.166893030_166893031delAG | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_006920.4(SCN1A):c.2803C>T (p.Arg935Cys) | 6323 | SCN1A | Pathogenic | 121918775 | RCV000059481; RCV000118240; RCV000189085; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403; MedGen:CN221809 | 2 | 166894396 | 166894396 | NM_006920.4:c.2803C>T | NP_008851.3:p.Arg935Cys | NC_000002.11:g.166894396G>A,NC_000002.11:g.166894396G>T | UniProtKB (variants):VAR_029682 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; CN221809 not provided; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.2758C>T (p.Arg920Cys) | 6323 | SCN1A | Likely pathogenic;Pathogenic | 121918788 | RCV000059475; RCV000153894; RCV000188897; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403; MedGen:CN221809 | 2 | 166894441 | 166894441 | NM_006920.4:c.2758C>T | NP_008851.3:p.Arg920Cys | NC_000002.11:g.166894441G>A | HGMD:CM024303,UniProtKB (variants):VAR_029678 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; CN221809 not provided; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.2591C>T (p.Thr864Met) | 6323 | SCN1A | Pathogenic | 121918623 | RCV000059471; RCV000013743; | N | MedGen:C1858672,OMIM:604233; MedGen:C1858673,OMIM:604403 | 2 | 166894608 | 166894608 | NM_006920.4:c.2591C>T | NP_008851.3:p.Thr864Met | NC_000002.11:g.166894608G>A,NC_000002.11:g.166894608G>T | OMIM Allelic Variant:182389.0002,UniProtKB (variants):VAR_010110 | C1858672 604233 Generalized epilepsy with febrile seizures plus, type 1; C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_006920.4(SCN1A):c.2557-2A>G | 6323 | SCN1A | Pathogenic | 727504140 | RCV000153895; RCV000153896; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166894644 | 166894644 | NM_006920.4:c.2557-2A>G | | NC_000002.11:g.166894644T>C | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_001165963.1(SCN1A):c.2584C>T (p.Arg862Ter) | 6323 | SCN1A | Pathogenic | 397514459 | RCV000174714; RCV000174713; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166895938 | 166895938 | NM_001165963.1:c.2584C>T | NP_001159435.1:p.Arg862Ter | NC_000002.11:g.166895938G>A,NC_000002.11:g.166895938G>C | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.2543G>A (p.Arg848His) | 6323 | SCN1A | Pathogenic | 398123588 | RCV000174715; RCV000079567; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166895946 | 166895946 | NM_006920.4:c.2543G>A | NP_008851.3:p.Arg848His | NC_000002.11:g.166895946C>T | HGMD:CM117761 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_001165963.1(SCN1A):c.2420dupT (p.Thr808Hisfs) | 6323 | SCN1A | Pathogenic | 786200989 | RCV000153897; RCV000153898; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166896102 | 166896102 | NM_001165963.1:c.2420dupT | NP_001159435.1:p.Thr808Hisfs | NC_000002.11:g.166896102dupA | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.2181G>A (p.Trp727Ter) | 6323 | SCN1A | Pathogenic | 786205214 | RCV000170444; | N | MedGen:C1858673,OMIM:604403 | 2 | 166897942 | 166897942 | NM_006920.4:c.2181G>A | NP_008851.3:p.Trp727Ter | NC_000002.11:g.166897942C>T | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_001165963.1(SCN1A):c.2134C>T (p.Arg712Ter) | 6323 | SCN1A | Pathogenic | 794726730 | RCV000174291; RCV000174292; RCV000188886; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403; MedGen:CN221809 | 2 | 166898844 | 166898844 | NM_001165963.1:c.2134C>T | NP_001159435.1:p.Arg712Ter | NC_000002.11:g.166898844G>A | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; CN221809 not provided; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_001165963.1(SCN1A):c.1837C>T (p.Arg613Ter) | 6323 | SCN1A | Pathogenic | 398123585 | RCV000174048; RCV000079562; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166900385 | 166900385 | NM_001165963.1:c.1837C>T | NP_001159435.1:p.Arg613Ter | NC_000002.11:g.166900385G>A | HGMD:CM065453 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.1766A>T (p.Asp589Val) | 6323 | SCN1A | Likely pathogenic | 398123584 | RCV000174049; RCV000079560; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166900456 | 166900456 | NM_006920.4:c.1766A>T | NP_008851.3:p.Asp589Val | NC_000002.11:g.166900456T>A | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.1162delT (p.Tyr388Ilefs) | 6323 | SCN1A | Pathogenic | 398123580 | RCV000180210; RCV000079552; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166904145 | 166904145 | NM_006920.4:c.1162delT | NP_008851.3:p.Tyr388Ilefs | NC_000002.11:g.166904145delA | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.1029-1G>C | 6323 | SCN1A | Pathogenic | 398123579 | RCV000180211; RCV000079550; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403 | 2 | 166904279 | 166904279 | NM_006920.4:c.1029-1G>C | | NC_000002.11:g.166904279C>G | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.830delG (p.Cys277Leufs) | 6323 | SCN1A | Pathogenic | 794727786 | RCV000179375; | N | MedGen:C1858673,OMIM:604403 | 2 | 166908363 | 166908363 | NM_006920.4:c.830delG | NP_008851.3:p.Cys277Leufs | NC_000002.11:g.166908363delC | - | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_001165963.1(SCN1A):c.664C>T (p.Arg222Ter) | 6323 | SCN1A | Pathogenic | 121918624 | RCV000032604; RCV000150094; RCV000188841; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403; MedGen:CN221809 | 2 | 166909392 | 166909392 | NM_001165963.1:c.664C>T | NP_001159435.1:p.Arg222Ter | NC_000002.11:g.166909392G>A | HGMD:CM013787,OMIM Allelic Variant:182389.0008 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; CN221809 not provided; C0751122 607208 Severe myoclonic epilepsy in infancy | | |
NM_006920.4(SCN1A):c.563A>T (p.Asp188Val) | 6323 | SCN1A | Pathogenic | 121917953 | RCV000059448; RCV000013744; | N | MedGen:C1858672,OMIM:604233; MedGen:C1858673,OMIM:604403 | 2 | 166911187 | 166911187 | NM_006920.4:c.563A>T | NP_008851.3:p.Asp188Val | NC_000002.11:g.166911187T>A | OMIM Allelic Variant:182389.0003,UniProtKB (variants):VAR_014267 | C1858672 604233 Generalized epilepsy with febrile seizures plus, type 1; C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_006920.4(SCN1A):c.434T>C (p.Met145Thr) | 6323 | SCN1A | Pathogenic | 121918631 | RCV000013758; | N | MedGen:C1858673,OMIM:604403 | 2 | 166912960 | 166912960 | NM_006920.4:c.434T>C | NP_008851.3:p.Met145Thr | NC_000002.11:g.166912960A>G,NC_000002.11:g.166912960A>T | OMIM Allelic Variant:182389.0015,UniProtKB (variants):VAR_025366 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2 | | |
NM_006920.4(SCN1A):c.302G>A (p.Arg101Gln) | 6323 | SCN1A | Pathogenic | 121917918 | RCV000059400; RCV000150095; RCV000188829; | N | MedGen:C0751122,OMIM:607208,SNOMED CT:230437002; MedGen:C1858673,OMIM:604403; MedGen:CN221809 | 2 | 166915161 | 166915161 | NM_006920.4:c.302G>A | NP_008851.3:p.Arg101Gln | NC_000002.11:g.166915161C>T | HGMD:CM044039,UniProtKB (variants):VAR_029661 | C1858673 604403 Generalized epilepsy with febrile seizures plus, type 2; CN221809 not provided; C0751122 607208 Severe myoclonic epilepsy in infancy | | |