MSeqDR Central Portal

About
MSeqDR-LSDB
Tools
- Quick-Mitome for WES
- Quick-Mitome
- Quick-Mitome Report
- mtDNA Tool:
- mvTool
- Phy-Mer
- MToolBox
- mvTool for Haplogroup
- mvTool with HmtDB
- MitoMaster
- MitoTIP tRNA Scoring
- MSeq-OpenCGA
- Variant Tool:
- VariantOneStop
- HBCR Exome (Retired)
- POLG Patho. Server
- Data - Awsomics GeEx
- Expert Panel
- Panel Tool:
- Gene Panel Examiner
- Transgenomic_NuclearMitome
- Pedigree Maker
- json2table
Phenome-Disease
Collaboration
- Genesis (GEM.App)
- LeighMap
- Expert Panel
- Collaboration Zone
Submission
- Submit_Interpret_Variant
- Instructions

Hello! Guest! Please Login or Register! Clinician Mode

Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term ZMYND11:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000015171	ZMYND11	0	0	8	ENSG00000015171	ENST00000397955	ENSP00000381046	zinc finger, MYND-type containing 11 [Source:HGNC Symbol;Acc:16966]	10	180405	300577	1	p15.3	225934	283603	ZMYND11	ZMYND11-008	HGNC Symbol	HGNC transcript name	19	37.8	protein_coding	protein_coding	ensembl_hava	havana	KNOWN	PUTATIVE	10771	16966	ZMYND11		27525
ENSG00000260150	ZMYND11	0	0	8	ENSG00000260150	ENST00000568174	ENSP00000457204	zinc finger, MYND-type containing 11 [Source:HGNC Symbol;Acc:16966]	HG905_PATCH	184465	304637	1	p15.3	184465	287651	ZMYND11	ZMYND11-009	HGNC Symbol	HGNC transcript name	9	37.8	protein_coding	protein_coding	havana	havana	KNOWN	NOVEL	10771	16966	ZMYND11		1000357894

Please limit to single gene from the list by clicking

or searching from top right search box.

MSeqDR Master Exome Data Set M1: 565 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	10	225960	G	A	ENST00000309776	ENSG00000015171	180405	300577	ENSP00000309992	ZMYND11	1	ZMY11_HUMAN	-	-	5'_UTR	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
2	10	225960	G	A	ENST00000381584	ENSG00000015171	180405	300577	ENSP00000370996	ZMYND11	1	-	-	-	5'_UTR	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
3	10	225960	G	A	ENST00000381591	ENSG00000015171	180405	300577	ENSP00000371003	ZMYND11	1	ZMY11_HUMAN	c.8G>A	p.R3H	non-syn	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
4	10	225960	G	A	ENST00000381602	ENSG00000015171	180405	300577	ENSP00000371015	ZMYND11	1	-	-	-	5'_UTR	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
5	10	225960	G	A	ENST00000381604	ENSG00000015171	180405	300577	ENSP00000371017	ZMYND11	1	ZMY11_HUMAN	-	-	5'_UTR	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
6	10	225960	G	A	ENST00000381607	ENSG00000015171	180405	300577	ENSP00000371020	ZMYND11	1	-	-	-	5'_UTR	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
7	10	225960	G	A	ENST00000397955	ENSG00000015171	180405	300577	ENSP00000381046	ZMYND11	1	-	c.8G>A	p.R3H	non-syn	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
8	10	225960	G	A	ENST00000397959	ENSG00000015171	180405	300577	ENSP00000381050	ZMYND11	1	ZMY11_HUMAN	c.8G>A	p.R3H	non-syn	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
9	10	225960	G	A	ENST00000397962	ENSG00000015171	180405	300577	ENSP00000381053	ZMYND11	1	ZMY11_HUMAN	c.8G>A	p.R3H	non-syn	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
10	10	225960	G	A	ENST00000402736	ENSG00000015171	180405	300577	ENSP00000386010	ZMYND11	1	-	c.8G>A	p.R3H	non-syn	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
11	10	225960	G	A	ENST00000403354	ENSG00000015171	180405	300577	ENSP00000385484	ZMYND11	1	-	c.8G>A	p.R3H	non-syn	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
12	10	225960	G	A	ENST00000439456	ENSG00000015171	180405	300577	ENSP00000397072	ZMYND11	1	-	c.8G>A	p.R3H	non-syn	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
13	10	225960	G	A	ENST00000509513	ENSG00000015171	180405	300577	ENSP00000424205	ZMYND11	1	-	c.8G>A	p.R3H	non-syn	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
14	10	225960	G	A	ENST00000558098	ENSG00000015171	180405	300577	ENSP00000452959	ZMYND11	1	-	c.8G>A	p.R3H	non-syn	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
15	10	225960	G	A	ENST00000602682	ENSG00000015171	180405	300577	ENSP00000473321	ZMYND11	1	-	c.8G>A	p.R3H	non-syn	NA	-	A=4/G=7160;A=0/G=3136;A=4/G=10296	lod=926:699	DAMAGING	-	-	het	1
16	10	243934	T	A	ENST00000381584	ENSG00000015171	180405	300577	ENSP00000370996	ZMYND11	1	-	c.54T>A	p.I18I	syn	NA	-	-	-	-	-	-	het	1
17	10	243934	T	A	ENST00000381604	ENSG00000015171	180405	300577	ENSP00000371017	ZMYND11	1	ZMY11_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	1
18	10	255810	G	A	ENST00000309776	ENSG00000015171	180405	300577	ENSP00000309992	ZMYND11	1	ZMY11_HUMAN	-	-	-19bp 3'_splice_site	rs200268452	-	A=7/G=8593;A=0/G=4406;A=7/G=12999	-	-	-	-	het	3
19	10	255810	G	A	ENST00000381584	ENSG00000015171	180405	300577	ENSP00000370996	ZMYND11	1	-	-	-	-19bp 3'_splice_site	rs200268452	-	A=7/G=8593;A=0/G=4406;A=7/G=12999	-	-	-	-	het	3
20	10	255810	G	A	ENST00000381591	ENSG00000015171	180405	300577	ENSP00000371003	ZMYND11	1	ZMY11_HUMAN	-	-	-19bp 3'_splice_site	rs200268452	-	A=7/G=8593;A=0/G=4406;A=7/G=12999	-	-	-	-	het	3

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding ZMYND11 10:180405..300577 region Gbrowse