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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term TPM3:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000143549	TPM3	0	0	21	ENSG00000143549	ENST00000312970		tropomyosin 3 [Source:HGNC Symbol;Acc:12012]	1	154127784	154167124	-1	q21.3	154130002	154155554	TPM3	TPM3-022	HGNC Symbol	HGNC transcript name	22	45.14	protein_coding	processed_transcript	ensembl_hava	havana	KNOWN	KNOWN	7170	12012	TPM3		27511

MSeqDR Master Exome Data Set M1: 160 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	1	154127786	T	-A	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	rs142425265	-	-	-	-	-	-	het	3
2	1	154127806	C	T	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	rs150915656	0.00092	-	-	-	-	-	het	1
3	1	154127820	T	C	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	rs16835852	0.2741	-	-	-	-	-	het	108
4	1	154127820	T	C	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	rs16835852	0.2741	-	-	-	-	-	hom	6
5	1	154128328	G	-TTCT	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	rs145405416	-	-	-	-	-	-	hom	9
6	1	154128328	G	-TTCT	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	rs145405416	-	-	-	-	-	-	het	90
7	1	154128328	G	-TT	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
8	1	154128436	T	C	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
9	1	154128490	G	-A	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
10	1	154128505	G	A	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
11	1	154128531	G	A	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
12	1	154128571	G	T	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	rs60282844	0.2717	-	-	-	-	-	het	44
13	1	154128571	G	T	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	rs60282844	0.2717	-	-	-	-	-	hom	5
14	1	154128672	G	A	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	rs4540651	0.8473	-	-	-	-	-	hom	209
15	1	154128672	G	A	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	rs4540651	0.8473	-	-	-	-	-	het	305
16	1	154128782	G	C	ENST00000368533	ENSG00000143549	154127784	154167124	ENSP00000357521	TPM3	-1	TPM3_HUMAN	-	-	3'_UTR	rs116380388	0.0172	-	-	-	-	-	het	5
17	1	154129614	T	-GAG	ENST00000328159	ENSG00000143549	154127784	154167124	ENSP00000357520	TPM3	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	5
18	1	154129614	T	-GAG	ENST00000330188	ENSG00000143549	154127784	154167124	ENSP00000339035	TPM3	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	5
19	1	154129614	T	-GAG	ENST00000341372	ENSG00000143549	154127784	154167124	ENSP00000339378	TPM3	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	5
20	1	154129614	T	-GAG	ENST00000341485	ENSG00000143549	154127784	154167124	ENSP00000341653	TPM3	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	5

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Transcripts and variants in the surrounding TPM3 1:154127784..154167124 region Gbrowse