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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term TNNT2:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000118194	TNNT2	1	15	197	ENSG00000118194	ENST00000455702	ENSP00000402238	troponin T type 2 (cardiac) [Source:HGNC Symbol;Acc:11949]	1	201328136	201346890	-1	q32.1	201332484	201346761	TNNT2	TNNT2-010	HGNC Symbol	HGNC transcript name	26	54.6	protein_coding	protein_coding	ensembl_hava	havana	KNOWN	NOVEL	7139	11949	TNNT2		27511

MSeqDR Master Exome Data Set M1: 527 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	1	201328267	G	A	ENST00000236918	ENSG00000118194	201328136	201346890	ENSP00000236918	TNNT2	-1	-	-	-	3'_UTR	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
2	1	201328267	G	A	ENST00000360372	ENSG00000118194	201328136	201346890	ENSP00000353535	TNNT2	-1	-	-	-	3'_UTR	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
3	1	201328267	G	A	ENST00000367315	ENSG00000118194	201328136	201346890	ENSP00000356284	TNNT2	-1	TNNT2_HUMAN	-	-	3'_UTR	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
4	1	201328267	G	A	ENST00000367317	ENSG00000118194	201328136	201346890	ENSP00000356286	TNNT2	-1	TNNT2_HUMAN	-	-	3'_UTR	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
5	1	201328267	G	A	ENST00000367318	ENSG00000118194	201328136	201346890	ENSP00000356287	TNNT2	-1	TNNT2_HUMAN	-	-	3'_UTR	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
6	1	201328267	G	A	ENST00000367320	ENSG00000118194	201328136	201346890	ENSP00000356289	TNNT2	-1	TNNT2_HUMAN	-	-	3'_UTR	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
7	1	201328267	G	A	ENST00000367322	ENSG00000118194	201328136	201346890	ENSP00000356291	TNNT2	-1	TNNT2_HUMAN	-	-	3'_UTR	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
8	1	201328267	G	A	ENST00000421663	ENSG00000118194	201328136	201346890	ENSP00000404134	TNNT2	-1	-	-	-	3'_UTR	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
9	1	201328267	G	A	ENST00000458432	ENSG00000118194	201328136	201346890	ENSP00000387874	TNNT2	-1	-	-	-	3'_UTR	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
10	1	201328267	G	A	ENST00000460780	ENSG00000118194	201328136	201346890	-	TNNT2	-1	-	c.2087C>T	p.P696L	non-syn	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
11	1	201328267	G	A	ENST00000476888	ENSG00000118194	201328136	201346890	-	TNNT2	-1	-	c.385C>T	p.R129W	non-syn	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
12	1	201328267	G	A	ENST00000491504	ENSG00000118194	201328136	201346890	-	TNNT2	-1	-	c.2177C>T	p.P726L	non-syn	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
13	1	201328267	G	A	ENST00000509001	ENSG00000118194	201328136	201346890	ENSP00000422031	TNNT2	-1	TNNT2_HUMAN	-	-	3'_UTR	rs3730244	0.0186	A=86/G=3096;A=8/G=1376;A=94/G=4472	-	-	-	-	het	22
14	1	201328272	C	T	ENST00000236918	ENSG00000118194	201328136	201346890	ENSP00000236918	TNNT2	-1	-	-	-	3'_UTR	rs3729998	0.0173	T=105/C=3077;T=9/C=1375;T=114/C=4452	-	-	-	-	hom	2
15	1	201328272	C	T	ENST00000236918	ENSG00000118194	201328136	201346890	ENSP00000236918	TNNT2	-1	-	-	-	3'_UTR	rs3729998	0.0173	T=105/C=3077;T=9/C=1375;T=114/C=4452	-	-	-	-	het	34
16	1	201328272	C	T	ENST00000360372	ENSG00000118194	201328136	201346890	ENSP00000353535	TNNT2	-1	-	-	-	3'_UTR	rs3729998	0.0173	T=105/C=3077;T=9/C=1375;T=114/C=4452	-	-	-	-	hom	2
17	1	201328272	C	T	ENST00000360372	ENSG00000118194	201328136	201346890	ENSP00000353535	TNNT2	-1	-	-	-	3'_UTR	rs3729998	0.0173	T=105/C=3077;T=9/C=1375;T=114/C=4452	-	-	-	-	het	34
18	1	201328272	C	T	ENST00000367315	ENSG00000118194	201328136	201346890	ENSP00000356284	TNNT2	-1	TNNT2_HUMAN	-	-	3'_UTR	rs3729998	0.0173	T=105/C=3077;T=9/C=1375;T=114/C=4452	-	-	-	-	hom	2
19	1	201328272	C	T	ENST00000367315	ENSG00000118194	201328136	201346890	ENSP00000356284	TNNT2	-1	TNNT2_HUMAN	-	-	3'_UTR	rs3729998	0.0173	T=105/C=3077;T=9/C=1375;T=114/C=4452	-	-	-	-	het	34
20	1	201328272	C	T	ENST00000367317	ENSG00000118194	201328136	201346890	ENSP00000356286	TNNT2	-1	TNNT2_HUMAN	-	-	3'_UTR	rs3729998	0.0173	T=105/C=3077;T=9/C=1375;T=114/C=4452	-	-	-	-	hom	2

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Transcripts and variants in the surrounding TNNT2 1:201328136..201346890 region Gbrowse