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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term SLITRK6:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000184564	SLITRK6	0	0	4	ENSG00000184564	ENST00000400286	ENSP00000383143	SLIT and NTRK-like family, member 6 [Source:HGNC Symbol;Acc:23503]	13	86366925	86373623	-1	q31.1	86366925	86373623	SLITRK6	SLITRK6-001	HGNC Symbol	HGNC transcript name	1	34.86	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	84189	23503	SLITRK6	NM_032229	27513

MSeqDR Master Exome Data Set M1: 47 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	13	86367009	C	A	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs1054544	0.4882	-	lod=474:628	-	-	-	het	290
2	13	86367009	C	A	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs1054544	0.4882	-	lod=474:628	-	-	-	hom	88
3	13	86367010	T	C	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs7998922	0.218	-	lod=474:628	-	-	-	het	96
4	13	86367010	T	C	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs7998922	0.218	-	lod=474:628	-	-	-	hom	3
5	13	86367031	A	C	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	NA	-	-	lod=474:628	-	-	-	het	1
6	13	86367304	A	G	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	NA	-	-	lod=105:467	-	-	-	het	3
7	13	86367367	A	G	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs187553032	0.0014	-	lod=112:473	-	-	-	het	4
8	13	86367401	C	T	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs191674255	0.0014	-	lod=112:473	-	-	-	hom	1
9	13	86367529	G	A	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs9319180	0.003	-	-	-	-	-	het	1
10	13	86367617	G	A	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs78279750	0.0056	-	lod=30:333	-	-	-	het	1
11	13	86367758	G	A	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs184678019	0.0029	-	-	-	-	-	het	1
12	13	86367877	T	C	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs1337266	0.73699	-	-	-	-	-	het	358
13	13	86367877	T	C	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs1337266	0.73699	-	-	-	-	-	hom	431
14	13	86367973	C	-T	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs34633805	-	-	lod=160:512	-	-	-	hom	99
15	13	86367973	C	-T	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	rs34633805	-	-	lod=160:512	-	-	-	het	360
16	13	86367985	C	+T	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	69
17	13	86368048	G	A	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	-	-	3'_UTR	NA	-	-	lod=71:425	-	-	-	het	1
18	13	86368121	T	C	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	c.2523A>G	p.T841T	syn	rs77044658	-	-	lod=612:655	-	-	-	het	2
19	13	86368420	G	C	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	c.2224C>G	p.Q742E	non-syn	NA	-	-	lod=30:333	TOLERATED	B	-	het	6
20	13	86368428	G	A	ENST00000400286	ENSG00000184564	86366925	86373623	ENSP00000383143	SLITRK6	-1	SLIK6_HUMAN	c.2216C>T	p.T739I	non-syn	NA	-	A=2/G=8196;A=0/G=3708;A=2/G=11904	lod=56:399	DAMAGING	B	-	het	1

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Transcripts and variants in the surrounding SLITRK6 13:86366925..86373623 region Gbrowse