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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term NTF4:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000225950	NTF4	0	0	4	ENSG00000225950	ENST00000599795	ENSP00000470689	neurotrophin 4 [Source:HGNC Symbol;Acc:8024]	19	49559050	49568333	-1	q13.33	49559050	49568333	NTF4	NTF4-001	HGNC Symbol	HGNC transcript name	6	57.99	protein_coding	nonsense_mediated_decay	ensembl_hava	havana	KNOWN	KNOWN	94027	8024	NTF4		27526

MSeqDR Master Exome Data Set M1: 73 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	19	49559188	A	G	ENST00000451356	ENSG00000225950	49559050	49568333	ENSP00000391622	NTF4	-1	-	-	-	3'_UTR	rs72553897	-	-	-	-	-	-	het	1
2	19	49559188	A	G	ENST00000599795	ENSG00000225950	49559050	49568333	ENSP00000470689	NTF4	-1	-	-	-	3'_UTR	rs72553897	-	-	-	-	-	-	het	1
3	19	49559288	A	G	ENST00000451356	ENSG00000225950	49559050	49568333	ENSP00000391622	NTF4	-1	-	-	-	3'_UTR	rs62127892	0.3093	-	-	-	-	-	het	1
4	19	49559288	A	G	ENST00000599795	ENSG00000225950	49559050	49568333	ENSP00000470689	NTF4	-1	-	-	-	3'_UTR	rs62127892	0.3093	-	-	-	-	-	het	1
5	19	49559290	G	A	ENST00000451356	ENSG00000225950	49559050	49568333	ENSP00000391622	NTF4	-1	-	-	-	3'_UTR	rs184259189	0.0036	-	-	-	-	-	hom	1
6	19	49559290	G	A	ENST00000451356	ENSG00000225950	49559050	49568333	ENSP00000391622	NTF4	-1	-	-	-	3'_UTR	rs184259189	0.0036	-	-	-	-	-	het	3
7	19	49559290	G	A	ENST00000599795	ENSG00000225950	49559050	49568333	ENSP00000470689	NTF4	-1	-	-	-	3'_UTR	rs184259189	0.0036	-	-	-	-	-	hom	1
8	19	49559290	G	A	ENST00000599795	ENSG00000225950	49559050	49568333	ENSP00000470689	NTF4	-1	-	-	-	3'_UTR	rs184259189	0.0036	-	-	-	-	-	het	3
9	19	49559292	G	A	ENST00000451356	ENSG00000225950	49559050	49568333	ENSP00000391622	NTF4	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
10	19	49559292	G	A	ENST00000599795	ENSG00000225950	49559050	49568333	ENSP00000470689	NTF4	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
11	19	49559312	C	A	ENST00000451356	ENSG00000225950	49559050	49568333	ENSP00000391622	NTF4	-1	-	-	-	3'_UTR	rs189097084	0.0055	-	-	-	-	-	het	2
12	19	49559312	C	A	ENST00000599795	ENSG00000225950	49559050	49568333	ENSP00000470689	NTF4	-1	-	-	-	3'_UTR	rs189097084	0.0055	-	-	-	-	-	het	2
13	19	49559329	G	A	ENST00000451356	ENSG00000225950	49559050	49568333	ENSP00000391622	NTF4	-1	-	-	-	3'_UTR	rs3810179	0.4883	-	-	-	-	-	het	302
14	19	49559329	G	A	ENST00000451356	ENSG00000225950	49559050	49568333	ENSP00000391622	NTF4	-1	-	-	-	3'_UTR	rs3810179	0.4883	-	-	-	-	-	hom	159
15	19	49559329	G	A	ENST00000599795	ENSG00000225950	49559050	49568333	ENSP00000470689	NTF4	-1	-	-	-	3'_UTR	rs3810179	0.4883	-	-	-	-	-	het	302
16	19	49559329	G	A	ENST00000599795	ENSG00000225950	49559050	49568333	ENSP00000470689	NTF4	-1	-	-	-	3'_UTR	rs3810179	0.4883	-	-	-	-	-	hom	159
17	19	49559396	C	G	ENST00000451356	ENSG00000225950	49559050	49568333	ENSP00000391622	NTF4	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
18	19	49559396	C	G	ENST00000599795	ENSG00000225950	49559050	49568333	ENSP00000470689	NTF4	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
19	19	49559518	C	G	ENST00000451356	ENSG00000225950	49559050	49568333	ENSP00000391622	NTF4	-1	-	c.698G>C	p.R233P	non-syn	rs3810180	0.1286	-	-	DAMAGING	-	-	het	180
20	19	49559518	C	G	ENST00000451356	ENSG00000225950	49559050	49568333	ENSP00000391622	NTF4	-1	-	c.698G>C	p.R233P	non-syn	rs3810180	0.1286	-	-	DAMAGING	-	-	hom	24

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Transcripts and variants in the surrounding NTF4 19:49559050..49568333 region Gbrowse