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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term LRAT:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000121207	LRAT	0	0	9	ENSG00000121207	ENST00000500890		lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) [Source:HGNC Symbol;Acc:6685]	4	155548097	155674270	1	q31.3	155548097	155621052	LRAT	LRAT-003	HGNC Symbol	HGNC transcript name	8	37.8	protein_coding	processed_transcript	ensembl_hava	havana	KNOWN	KNOWN	101927965	6685	LRAT		27524

MSeqDR Master Exome Data Set M1: 121 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	4	155665361	C	T	ENST00000336356	ENSG00000121207	155548097	155674270	ENSP00000337224	LRAT	1	LRAT_HUMAN	-	-	5'_UTR	rs113018020	0.0128	-	-	-	-	-	het	1
2	4	155665361	C	T	ENST00000510733	ENSG00000121207	155548097	155674270	-	LRAT	1	-	c.210C>T	p.L70L	syn	rs113018020	0.0128	-	-	-	-	-	het	1
3	4	155665683	C	G	ENST00000336356	ENSG00000121207	155548097	155674270	ENSP00000337224	LRAT	1	LRAT_HUMAN	c.205C>G	p.R69G	non-syn	NA	-	-	lod=353:596	DAMAGING	P	-	het	2
4	4	155665683	C	G	ENST00000502525	ENSG00000121207	155548097	155674270	ENSP00000422324	LRAT	1	-	c.205C>G	p.R69G	non-syn	NA	-	-	lod=353:596	DAMAGING	P	-	het	2
5	4	155665683	C	G	ENST00000507827	ENSG00000121207	155548097	155674270	ENSP00000426761	LRAT	1	LRAT_HUMAN	c.205C>G	p.R69G	non-syn	NA	-	-	lod=353:596	DAMAGING	P	-	het	2
6	4	155665683	C	G	ENST00000510733	ENSG00000121207	155548097	155674270	-	LRAT	1	-	c.532C>G	p.R178G	non-syn	NA	-	-	lod=353:596	DAMAGING	P	-	het	2
7	4	155665820	G	A	ENST00000336356	ENSG00000121207	155548097	155674270	ENSP00000337224	LRAT	1	LRAT_HUMAN	c.342G>A	p.E114E	syn	rs17031981	0.1907	A=24/G=8576;A=1395/G=3011;A=1419/G=11587	lod=161:512	-	-	-	het	24
8	4	155665820	G	A	ENST00000336356	ENSG00000121207	155548097	155674270	ENSP00000337224	LRAT	1	LRAT_HUMAN	c.342G>A	p.E114E	syn	rs17031981	0.1907	A=24/G=8576;A=1395/G=3011;A=1419/G=11587	lod=161:512	-	-	-	hom	1
9	4	155665820	G	A	ENST00000507827	ENSG00000121207	155548097	155674270	ENSP00000426761	LRAT	1	LRAT_HUMAN	c.342G>A	p.E114E	syn	rs17031981	0.1907	A=24/G=8576;A=1395/G=3011;A=1419/G=11587	lod=161:512	-	-	-	het	24
10	4	155665820	G	A	ENST00000507827	ENSG00000121207	155548097	155674270	ENSP00000426761	LRAT	1	LRAT_HUMAN	c.342G>A	p.E114E	syn	rs17031981	0.1907	A=24/G=8576;A=1395/G=3011;A=1419/G=11587	lod=161:512	-	-	-	hom	1
11	4	155665820	G	A	ENST00000510733	ENSG00000121207	155548097	155674270	-	LRAT	1	-	c.669G>A	p.E223E	syn	rs17031981	0.1907	A=24/G=8576;A=1395/G=3011;A=1419/G=11587	lod=161:512	-	-	-	het	24
12	4	155665820	G	A	ENST00000510733	ENSG00000121207	155548097	155674270	-	LRAT	1	-	c.669G>A	p.E223E	syn	rs17031981	0.1907	A=24/G=8576;A=1395/G=3011;A=1419/G=11587	lod=161:512	-	-	-	hom	1
13	4	155670198	G	A	ENST00000336356	ENSG00000121207	155548097	155674270	ENSP00000337224	LRAT	1	LRAT_HUMAN	c.603G>A	p.L201L	syn	NA	-	-	lod=57:401	-	-	-	het	1
14	4	155670198	G	A	ENST00000502474	ENSG00000121207	155548097	155674270	-	LRAT	1	-	c.398G>A	p.W133*	non-syn	NA	-	-	lod=57:401	-	-	-	het	1
15	4	155670198	G	A	ENST00000507827	ENSG00000121207	155548097	155674270	ENSP00000426761	LRAT	1	LRAT_HUMAN	c.603G>A	p.L201L	syn	NA	-	-	lod=57:401	-	-	-	het	1
16	4	155670198	G	A	ENST00000510733	ENSG00000121207	155548097	155674270	-	LRAT	1	-	c.930G>A	p.L310L	syn	NA	-	-	lod=57:401	-	-	-	het	1
17	4	155670198	G	A	ENST00000510919	ENSG00000121207	155548097	155674270	-	LRAT	1	-	c.359G>A	p.W120*	non-syn	NA	-	-	lod=57:401	-	-	-	het	1
18	4	155670222	G	A	ENST00000336356	ENSG00000121207	155548097	155674270	ENSP00000337224	LRAT	1	LRAT_HUMAN	c.627G>A	p.T209T	syn	rs146717374	0.0085	A=1/G=8599;A=66/G=4340;A=67/G=12939	lod=21:295	-	-	-	het	1
19	4	155670222	G	A	ENST00000502474	ENSG00000121207	155548097	155674270	-	LRAT	1	-	c.422G>A	p.R141Q	non-syn	rs146717374	0.0085	A=1/G=8599;A=66/G=4340;A=67/G=12939	lod=21:295	-	-	-	het	1
20	4	155670222	G	A	ENST00000507827	ENSG00000121207	155548097	155674270	ENSP00000426761	LRAT	1	LRAT_HUMAN	c.627G>A	p.T209T	syn	rs146717374	0.0085	A=1/G=8599;A=66/G=4340;A=67/G=12939	lod=21:295	-	-	-	het	1

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding LRAT 4:155548097..155674270 region Gbrowse