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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term LMOD3:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000163380	LMOD3	0	0	6	ENSG00000163380	ENST00000420581	ENSP00000414670	leiomodin 3 (fetal) [Source:HGNC Symbol;Acc:6649]	3	69156023	69172183	-1	p14.1	69156023	69171717	LMOD3	LMOD3-001	HGNC Symbol	HGNC transcript name	3	40.47	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	56203	6649	LMOD3	NM_198271	27517

MSeqDR Master Exome Data Set M1: 146 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	3	69156334	T	C	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs73835726	0.1946	-	-	-	-	-	het	31
2	3	69156334	T	C	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs73835726	0.1946	-	-	-	-	-	hom	1
3	3	69156375	T	G	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	3
4	3	69156420	C	T	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs78662166	0.0276	-	-	-	-	-	het	1
5	3	69156421	G	A	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs9816032	0.4977	-	-	-	-	-	hom	148
6	3	69156421	G	A	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs9816032	0.4977	-	-	-	-	-	het	323
7	3	69156530	T	C	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs116430467	0.0442	-	-	-	-	-	het	26
8	3	69156530	T	C	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs116430467	0.0442	-	-	-	-	-	hom	3
9	3	69156604	G	-TTTTTTTTTTTTTTTTTTTTTTTTT	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	hom	1
10	3	69156604	G	-TTTTTTTTTTTTTTTTTTTTTTTTTT	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	hom	2
11	3	69156604	G	-TTTTTTTTTTTTTTTTTTTTTTTTTTT	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	hom	1
12	3	69156681	A	G	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
13	3	69156813	A	G	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
14	3	69156859	C	G	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs144633600	0.003	-	-	-	-	-	het	1
15	3	69156882	C	T	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs148476179	0.0062	-	-	-	-	-	het	19
16	3	69156882	C	T	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs148476179	0.0062	-	-	-	-	-	hom	3
17	3	69157054	G	A	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
18	3	69157099	G	A	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs3796214	0.1704	-	-	-	-	-	het	25
19	3	69157289	T	-AAG	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs3839077	-	-	-	-	-	-	het	24
20	3	69157381	C	T	ENST00000420581	ENSG00000163380	69156023	69172183	ENSP00000414670	LMOD3	-1	LMOD3_HUMAN	-	-	3'_UTR	rs3796213	0.2	-	-	-	-	-	hom	3

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding LMOD3 3:69156023..69172183 region Gbrowse