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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term LIPC:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000166035	LIPC	1	3	2	ENSG00000166035	ENST00000356113	ENSP00000348425	lipase, hepatic [Source:HGNC Symbol;Acc:6619]	15	58702768	58861151	1	q21.3	58702768	58861072	LIPC	LIPC-002	HGNC Symbol	HGNC transcript name	7	45.45	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	3990	6619	LIPC		27521

MSeqDR Master Exome Data Set M1: 240 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	15	58724331	A	C	ENST00000299022	ENSG00000166035	58702768	58861151	ENSP00000299022	LIPC	1	LIPC_HUMAN	-	-	+12bp 5'_splice_site	NA	-	-	-	-	-	-	het	3
2	15	58724331	A	C	ENST00000356113	ENSG00000166035	58702768	58861151	ENSP00000348425	LIPC	1	LIPC_HUMAN	-	-	+12bp 5'_splice_site	NA	-	-	-	-	-	-	het	3
3	15	58724331	A	C	ENST00000414170	ENSG00000166035	58702768	58861151	ENSP00000395569	LIPC	1	-	-	-	+12bp 5'_splice_site	NA	-	-	-	-	-	-	het	3
4	15	58724331	A	C	ENST00000433326	ENSG00000166035	58702768	58861151	ENSP00000395002	LIPC	1	-	-	-	+12bp 5'_splice_site	NA	-	-	-	-	-	-	het	3
5	15	58724331	A	C	ENST00000559845	ENSG00000166035	58702768	58861151	-	LIPC	1	-	-	-	+12bp 5'_splice_site	NA	-	-	-	-	-	-	het	3
6	15	58724331	A	C	ENST00000560257	ENSG00000166035	58702768	58861151	-	LIPC	1	-	c.703A>C	p.T235P	non-syn	NA	-	-	-	-	-	-	het	3
7	15	58724371	C	T	ENST00000560257	ENSG00000166035	58702768	58861151	-	LIPC	1	-	c.743C>T	p.T248M	non-syn	rs8192701	0.1393	T=693/C=3909;T=75/C=2557;T=768/C=6466	-	-	-	HGMD	het	186
8	15	58724371	C	T	ENST00000560257	ENSG00000166035	58702768	58861151	-	LIPC	1	-	c.743C>T	p.T248M	non-syn	rs8192701	0.1393	T=693/C=3909;T=75/C=2557;T=768/C=6466	-	-	-	HGMD	hom	14
9	15	58724383	A	G	ENST00000560257	ENSG00000166035	58702768	58861151	-	LIPC	1	-	c.755A>G	p.K252R	non-syn	rs11631342	0.107	-	-	-	-	-	het	34
10	15	58724383	A	G	ENST00000560257	ENSG00000166035	58702768	58861151	-	LIPC	1	-	c.755A>G	p.K252R	non-syn	rs11631342	0.107	-	-	-	-	-	hom	1
11	15	58724451	G	A	ENST00000560257	ENSG00000166035	58702768	58861151	-	LIPC	1	-	c.823G>A	p.D275N	non-syn	NA	-	-	-	-	-	-	het	2
12	15	58724524	A	G	ENST00000560257	ENSG00000166035	58702768	58861151	-	LIPC	1	-	c.896A>G	p.299	syn	rs6494005	0.45803	-	-	-	-	-	het	49
13	15	58724524	A	G	ENST00000560257	ENSG00000166035	58702768	58861151	-	LIPC	1	-	c.896A>G	p.299	syn	rs6494005	0.45803	-	-	-	-	-	hom	56
14	15	58724555	G	A	ENST00000560257	ENSG00000166035	58702768	58861151	-	LIPC	1	-	c.927G>A	p.Q309Q	syn	NA	-	-	-	-	-	-	het	2
15	15	58830550	C	A	ENST00000299022	ENSG00000166035	58702768	58861151	ENSP00000299022	LIPC	1	LIPC_HUMAN	c.107C>A	p.A36D	non-syn	NA	-	-	-	DAMAGING	B	-	het	2
16	15	58830550	C	A	ENST00000356113	ENSG00000166035	58702768	58861151	ENSP00000348425	LIPC	1	LIPC_HUMAN	c.107C>A	p.A36D	non-syn	NA	-	-	-	DAMAGING	B	-	het	2
17	15	58830550	C	A	ENST00000414170	ENSG00000166035	58702768	58861151	ENSP00000395569	LIPC	1	-	c.107C>A	p.A36D	non-syn	NA	-	-	-	DAMAGING	B	-	het	2
18	15	58830550	C	A	ENST00000433326	ENSG00000166035	58702768	58861151	ENSP00000395002	LIPC	1	-	c.107C>A	p.A36D	non-syn	NA	-	-	-	DAMAGING	B	-	het	2
19	15	58830707	C	T	ENST00000299022	ENSG00000166035	58702768	58861151	ENSP00000299022	LIPC	1	LIPC_HUMAN	c.264C>T	p.H88H	syn	rs7175412	0.0482	T=2/C=8582;T=155/C=4229;T=157/C=12811	lod=121:482	-	-	-	het	2
20	15	58830707	C	T	ENST00000356113	ENSG00000166035	58702768	58861151	ENSP00000348425	LIPC	1	LIPC_HUMAN	c.264C>T	p.H88H	syn	rs7175412	0.0482	T=2/C=8582;T=155/C=4229;T=157/C=12811	lod=121:482	-	-	-	het	2

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
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Transcripts and variants in the surrounding LIPC 15:58702768..58861151 region Gbrowse