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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term GNRHR:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000109163	GNRHR	0	0	19	ENSG00000109163	ENST00000226413	ENSP00000226413	gonadotropin-releasing hormone receptor [Source:HGNC Symbol;Acc:4421]	4	68605046	68620078	-1	q13.2	68605046	68620078	GNRHR	GNRHR-001	HGNC Symbol	HGNC transcript name	2	34.79	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	2798	4421	GNRHR	NM_000406	27524

MSeqDR Master Exome Data Set M1: 36 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	4	68605369	A	G	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	rs17635850	0.40758	-	-	-	-	-	hom	122
2	4	68605369	A	G	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	rs17635850	0.40758	-	-	-	-	-	het	304
3	4	68605389	G	A	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	rs35683646	0.23699	-	-	-	-	-	het	238
4	4	68605389	G	A	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	rs35683646	0.23699	-	-	-	-	-	hom	38
5	4	68605396	C	G	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	rs35610027	0.24299	-	-	-	-	-	het	238
6	4	68605396	C	G	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	rs35610027	0.24299	-	-	-	-	-	hom	38
7	4	68605471	A	G	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
8	4	68605556	G	A	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
9	4	68605615	T	C	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	rs35845954	0.23626	-	-	-	-	-	hom	37
10	4	68605615	T	C	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	rs35845954	0.23626	-	-	-	-	-	het	238
11	4	68605619	T	G	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
12	4	68605703	A	G	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	rs115861964	0.00841	-	-	-	-	-	het	13
13	4	68605813	T	C	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	rs111894416	0.0099	-	-	-	-	-	het	1
14	4	68606120	C	T	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	3'_UTR	rs58921483	0.0084	-	-	-	-	-	het	1
15	4	68610519	T	-A	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	-	-	-14bp 3'_splice_site	NA	-	-	-	-	-	-	het	1
16	4	68619601	G	A	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	c.453C>T	p.S151S	syn	rs4986942	0.08595	A=853/G=7747;A=466/G=3940;A=1319/G=11687	-	-	-	-	het	167
17	4	68619601	G	A	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	c.453C>T	p.S151S	syn	rs4986942	0.08595	A=853/G=7747;A=466/G=3940;A=1319/G=11687	-	-	-	-	hom	2
18	4	68619601	G	A	ENST00000420975	ENSG00000109163	68605046	68620078	ENSP00000397561	GNRHR	-1	GNRHR_HUMAN	c.453C>T	p.S151S	syn	rs4986942	0.08595	A=853/G=7747;A=466/G=3940;A=1319/G=11687	-	-	-	-	het	167
19	4	68619601	G	A	ENST00000420975	ENSG00000109163	68605046	68620078	ENSP00000397561	GNRHR	-1	GNRHR_HUMAN	c.453C>T	p.S151S	syn	rs4986942	0.08595	A=853/G=7747;A=466/G=3940;A=1319/G=11687	-	-	-	-	hom	2
20	4	68619618	G	A	ENST00000226413	ENSG00000109163	68605046	68620078	ENSP00000226413	GNRHR	-1	GNRHR_HUMAN	c.436C>T	p.P146S	non-syn	rs144900788	-	A=6/G=8594;A=0/G=4406;A=6/G=13000	lod=39:361	DAMAGING	D	HGMD	het	3

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding GNRHR 4:68605046..68620078 region Gbrowse