MSeqDR Central Portal

About
MSeqDR-LSDB
Tools
- Quick-Mitome for WES
- Quick-Mitome
- Quick-Mitome Report
- mtDNA Tool:
- mvTool
- Phy-Mer
- MToolBox
- mvTool for Haplogroup
- mvTool with HmtDB
- MitoMaster
- MitoTIP tRNA Scoring
- MSeq-OpenCGA
- Variant Tool:
- VariantOneStop
- HBCR Exome (Retired)
- POLG Patho. Server
- Data - Awsomics GeEx
- Expert Panel
- Panel Tool:
- Gene Panel Examiner
- Transgenomic_NuclearMitome
- Pedigree Maker
- json2table
Phenome-Disease
Collaboration
- Genesis (GEM.App)
- LeighMap
- Expert Panel
- Collaboration Zone
Submission
- Submit_Interpret_Variant
- Instructions

Hello! Guest! Please Login or Register! Clinician Mode

Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term SELP:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000174175	SELP	0	0	3	ENSG00000174175	ENST00000426706	ENSP00000391694	selectin P (granule membrane protein 140kDa, antigen CD62) [Source:HGNC Symbol;Acc:10721]	1	169558087	169599431	-1	q24.2	169558087	169588457	SELP	SELP-002	HGNC Symbol	HGNC transcript name	11	40.48	protein_coding	protein_coding	ensembl_hava	havana	KNOWN	NOVEL	6403	10721	SELP		27511

MSeqDR Master Exome Data Set M1: 527 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	1	169559396	G	A	ENST00000263686	ENSG00000174175	169558087	169599431	ENSP00000263686	SELP	-1	LYAM3_HUMAN	c.2483C>T	p.P828L	non-syn	rs191909936	0.0014	A=5/G=8595;A=0/G=4406;A=5/G=13001	lod=75:431	DAMAGING	D	-	het	2
2	1	169559396	G	A	ENST00000367786	ENSG00000174175	169558087	169599431	ENSP00000356760	SELP	-1	-	c.2297C>T	p.P766L	non-syn	rs191909936	0.0014	A=5/G=8595;A=0/G=4406;A=5/G=13001	lod=75:431	DAMAGING	D	-	het	2
3	1	169559396	G	A	ENST00000367788	ENSG00000174175	169558087	169599431	ENSP00000356762	SELP	-1	-	c.2297C>T	p.P766L	non-syn	rs191909936	0.0014	A=5/G=8595;A=0/G=4406;A=5/G=13001	lod=75:431	DAMAGING	D	-	het	2
4	1	169559396	G	A	ENST00000367791	ENSG00000174175	169558087	169599431	ENSP00000356765	SELP	-1	-	c.1925C>T	p.P642L	non-syn	rs191909936	0.0014	A=5/G=8595;A=0/G=4406;A=5/G=13001	lod=75:431	DAMAGING	D	-	het	2
5	1	169559396	G	A	ENST00000367792	ENSG00000174175	169558087	169599431	ENSP00000356766	SELP	-1	-	c.1931C>T	p.P644L	non-syn	rs191909936	0.0014	A=5/G=8595;A=0/G=4406;A=5/G=13001	lod=75:431	DAMAGING	D	-	het	2
6	1	169559396	G	A	ENST00000367793	ENSG00000174175	169558087	169599431	ENSP00000356767	SELP	-1	-	c.2297C>T	p.P766L	non-syn	rs191909936	0.0014	A=5/G=8595;A=0/G=4406;A=5/G=13001	lod=75:431	DAMAGING	D	-	het	2
7	1	169559396	G	A	ENST00000367794	ENSG00000174175	169558087	169599431	ENSP00000356768	SELP	-1	-	c.2297C>T	p.P766L	non-syn	rs191909936	0.0014	A=5/G=8595;A=0/G=4406;A=5/G=13001	lod=75:431	DAMAGING	D	-	het	2
8	1	169559396	G	A	ENST00000426706	ENSG00000174175	169558087	169599431	ENSP00000391694	SELP	-1	-	c.2360C>T	p.P787L	non-syn	rs191909936	0.0014	A=5/G=8595;A=0/G=4406;A=5/G=13001	lod=75:431	DAMAGING	D	-	het	2
9	1	169559396	G	A	ENST00000458599	ENSG00000174175	169558087	169599431	ENSP00000399368	SELP	-1	-	c.1931C>T	p.P644L	non-syn	rs191909936	0.0014	A=5/G=8595;A=0/G=4406;A=5/G=13001	lod=75:431	DAMAGING	D	-	het	2
10	1	169559396	G	A	ENST00000466167	ENSG00000174175	169558087	169599431	-	SELP	-1	-	c.190C>T	p.R64*	non-syn	rs191909936	0.0014	A=5/G=8595;A=0/G=4406;A=5/G=13001	lod=75:431	DAMAGING	D	-	het	2
11	1	169559436	G	A	ENST00000263686	ENSG00000174175	169558087	169599431	ENSP00000263686	SELP	-1	LYAM3_HUMAN	c.2443C>T	p.L815L	syn	NA	-	-	lod=75:431	-	-	-	het	2
12	1	169559436	G	A	ENST00000367786	ENSG00000174175	169558087	169599431	ENSP00000356760	SELP	-1	-	c.2257C>T	p.L753L	syn	NA	-	-	lod=75:431	-	-	-	het	2
13	1	169559436	G	A	ENST00000367788	ENSG00000174175	169558087	169599431	ENSP00000356762	SELP	-1	-	c.2257C>T	p.L753L	syn	NA	-	-	lod=75:431	-	-	-	het	2
14	1	169559436	G	A	ENST00000367791	ENSG00000174175	169558087	169599431	ENSP00000356765	SELP	-1	-	c.1885C>T	p.L629L	syn	NA	-	-	lod=75:431	-	-	-	het	2
15	1	169559436	G	A	ENST00000367792	ENSG00000174175	169558087	169599431	ENSP00000356766	SELP	-1	-	c.1891C>T	p.L631L	syn	NA	-	-	lod=75:431	-	-	-	het	2
16	1	169559436	G	A	ENST00000367793	ENSG00000174175	169558087	169599431	ENSP00000356767	SELP	-1	-	c.2257C>T	p.L753L	syn	NA	-	-	lod=75:431	-	-	-	het	2
17	1	169559436	G	A	ENST00000367794	ENSG00000174175	169558087	169599431	ENSP00000356768	SELP	-1	-	c.2257C>T	p.L753L	syn	NA	-	-	lod=75:431	-	-	-	het	2
18	1	169559436	G	A	ENST00000426706	ENSG00000174175	169558087	169599431	ENSP00000391694	SELP	-1	-	c.2320C>T	p.L774L	syn	NA	-	-	lod=75:431	-	-	-	het	2
19	1	169559436	G	A	ENST00000458599	ENSG00000174175	169558087	169599431	ENSP00000399368	SELP	-1	-	c.1891C>T	p.L631L	syn	NA	-	-	lod=75:431	-	-	-	het	2
20	1	169559436	G	A	ENST00000466167	ENSG00000174175	169558087	169599431	-	SELP	-1	-	c.150C>T	p.T50T	syn	NA	-	-	lod=75:431	-	-	-	het	2

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding SELP 1:169558087..169599431 region Gbrowse