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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term FASLG:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000117560	FASLG	0	0	4	ENSG00000117560	ENST00000367721	ENSP00000356694	Fas ligand (TNF superfamily, member 6) [Source:HGNC Symbol;Acc:11936]	1	172628154	172636014	1	q24.3	172628158	172636014	FASLG	FASLG-001	HGNC Symbol	HGNC transcript name	2	41.71	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	356	11936	FASLG	NM_000639	27511

MSeqDR Master Exome Data Set M1: 47 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	1	172628449	G	A	ENST00000340030	ENSG00000117560	172628154	172636014	ENSP00000344739	FASLG	1	TNFL6_HUMAN	c.108G>A	p.V36V	syn	rs140595317	-	A=8/G=8592;A=1/G=4405;A=9/G=12997	lod=19:284	-	-	-	het	2
2	1	172628449	G	A	ENST00000367721	ENSG00000117560	172628154	172636014	ENSP00000356694	FASLG	1	TNFL6_HUMAN	c.108G>A	p.V36V	syn	rs140595317	-	A=8/G=8592;A=1/G=4405;A=9/G=12997	lod=19:284	-	-	-	het	2
3	1	172628488	G	A	ENST00000340030	ENSG00000117560	172628154	172636014	ENSP00000344739	FASLG	1	TNFL6_HUMAN	c.147G>A	p.P49P	syn	rs61756244	0.1461	A=7/G=8593;A=714/G=3692;A=721/G=12285	-	-	-	-	hom	4
4	1	172628488	G	A	ENST00000340030	ENSG00000117560	172628154	172636014	ENSP00000344739	FASLG	1	TNFL6_HUMAN	c.147G>A	p.P49P	syn	rs61756244	0.1461	A=7/G=8593;A=714/G=3692;A=721/G=12285	-	-	-	-	het	11
5	1	172628488	G	A	ENST00000367721	ENSG00000117560	172628154	172636014	ENSP00000356694	FASLG	1	TNFL6_HUMAN	c.147G>A	p.P49P	syn	rs61756244	0.1461	A=7/G=8593;A=714/G=3692;A=721/G=12285	-	-	-	-	hom	4
6	1	172628488	G	A	ENST00000367721	ENSG00000117560	172628154	172636014	ENSP00000356694	FASLG	1	TNFL6_HUMAN	c.147G>A	p.P49P	syn	rs61756244	0.1461	A=7/G=8593;A=714/G=3692;A=721/G=12285	-	-	-	-	het	11
7	1	172628607	T	C	ENST00000340030	ENSG00000117560	172628154	172636014	ENSP00000344739	FASLG	1	TNFL6_HUMAN	c.266T>C	p.M89T	non-syn	NA	-	-	lod=83:441	DAMAGING	D	-	het	1
8	1	172628607	T	C	ENST00000367721	ENSG00000117560	172628154	172636014	ENSP00000356694	FASLG	1	TNFL6_HUMAN	c.266T>C	p.M89T	non-syn	NA	-	-	lod=83:441	DAMAGING	D	-	het	1
9	1	172628660	C	A	ENST00000340030	ENSG00000117560	172628154	172636014	ENSP00000344739	FASLG	1	TNFL6_HUMAN	c.319C>A	p.L107I	non-syn	NA	-	-	lod=83:441	DAMAGING	D	-	het	1
10	1	172628660	C	A	ENST00000367721	ENSG00000117560	172628154	172636014	ENSP00000356694	FASLG	1	TNFL6_HUMAN	c.319C>A	p.L107I	non-syn	NA	-	-	lod=83:441	DAMAGING	D	-	het	1
11	1	172629250	C	A	ENST00000367721	ENSG00000117560	172628154	172636014	ENSP00000356694	FASLG	1	TNFL6_HUMAN	c.364C>A	p.H122N	non-syn	rs140406512	0.00091	A=8/C=8592;A=1/C=4405;A=9/C=12997	-	TOLERATED	B	-	het	3
12	1	172633459	C	G	ENST00000340030	ENSG00000117560	172628154	172636014	ENSP00000344739	FASLG	1	TNFL6_HUMAN	-	-	-15bp 3'_splice_site	NA	-	G=0/C=8600;G=3/C=4403;G=3/C=13003	-	-	-	-	het	1
13	1	172633459	C	G	ENST00000367721	ENSG00000117560	172628154	172636014	ENSP00000356694	FASLG	1	TNFL6_HUMAN	-	-	-15bp 3'_splice_site	NA	-	G=0/C=8600;G=3/C=4403;G=3/C=13003	-	-	-	-	het	1
14	1	172633537	A	G	ENST00000340030	ENSG00000117560	172628154	172636014	ENSP00000344739	FASLG	1	TNFL6_HUMAN	-	-	+7bp 5'_splice_site	rs201525996	-	G=1/A=8599;G=28/A=4378;G=29/A=12977	-	-	-	-	het	4
15	1	172633537	A	G	ENST00000367721	ENSG00000117560	172628154	172636014	ENSP00000356694	FASLG	1	TNFL6_HUMAN	-	-	+7bp 5'_splice_site	rs201525996	-	G=1/A=8599;G=28/A=4378;G=29/A=12977	-	-	-	-	het	4
16	1	172635210	A	T	ENST00000340030	ENSG00000117560	172628154	172636014	ENSP00000344739	FASLG	1	TNFL6_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
17	1	172635210	A	T	ENST00000367721	ENSG00000117560	172628154	172636014	ENSP00000356694	FASLG	1	TNFL6_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
18	1	172635222	G	T	ENST00000340030	ENSG00000117560	172628154	172636014	ENSP00000344739	FASLG	1	TNFL6_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
19	1	172635222	G	T	ENST00000367721	ENSG00000117560	172628154	172636014	ENSP00000356694	FASLG	1	TNFL6_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
20	1	172635323	C	G	ENST00000340030	ENSG00000117560	172628154	172636014	ENSP00000344739	FASLG	1	TNFL6_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1

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Transcripts and variants in the surrounding FASLG 1:172628154..172636014 region Gbrowse