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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term BDNF:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000176697	BDNF	1	1	1	ENSG00000176697	ENST00000395983	ENSP00000379307	brain-derived neurotrophic factor [Source:HGNC Symbol;Acc:1033]	11	27676440	27743605	-1	p14.1	27676440	27722600	BDNF	BDNF-007	HGNC Symbol	HGNC transcript name	19	40.24	protein_coding	protein_coding	ensembl_hava	havana	KNOWN	KNOWN	627	1033	BDNF	NM_001143809	27504

MSeqDR Master Exome Data Set M1: 933 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	11	27676494	A	-TATAT	ENST00000314915	ENSG00000176697	27676440	27743605	ENSP00000320002	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
2	11	27676494	A	-TATAT	ENST00000356660	ENSG00000176697	27676440	27743605	ENSP00000349084	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
3	11	27676494	A	-TATAT	ENST00000395978	ENSG00000176697	27676440	27743605	ENSP00000379302	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
4	11	27676494	A	-TATAT	ENST00000395980	ENSG00000176697	27676440	27743605	ENSP00000379304	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
5	11	27676494	A	-TATAT	ENST00000395981	ENSG00000176697	27676440	27743605	ENSP00000379305	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
6	11	27676494	A	-TATAT	ENST00000395983	ENSG00000176697	27676440	27743605	ENSP00000379307	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
7	11	27676494	A	-TATAT	ENST00000395986	ENSG00000176697	27676440	27743605	ENSP00000379309	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
8	11	27676494	A	-TATAT	ENST00000418212	ENSG00000176697	27676440	27743605	ENSP00000400502	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
9	11	27676494	A	-TATAT	ENST00000420794	ENSG00000176697	27676440	27743605	ENSP00000389564	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
10	11	27676494	A	-TATAT	ENST00000438929	ENSG00000176697	27676440	27743605	ENSP00000414303	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
11	11	27676494	A	-TATAT	ENST00000439476	ENSG00000176697	27676440	27743605	ENSP00000389345	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
12	11	27676494	A	-TATAT	ENST00000525528	ENSG00000176697	27676440	27743605	ENSP00000437138	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
13	11	27676494	A	-TATAT	ENST00000525950	ENSG00000176697	27676440	27743605	ENSP00000432035	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
14	11	27676494	A	-TATAT	ENST00000530786	ENSG00000176697	27676440	27743605	ENSP00000433003	BDNF	-1	-	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
15	11	27676494	A	-TATAT	ENST00000530861	ENSG00000176697	27676440	27743605	ENSP00000435564	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
16	11	27676494	A	-TATAT	ENST00000532997	ENSG00000176697	27676440	27743605	ENSP00000435805	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
17	11	27676494	A	-TATAT	ENST00000533131	ENSG00000176697	27676440	27743605	ENSP00000432727	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
18	11	27676494	A	-TATAT	ENST00000533246	ENSG00000176697	27676440	27743605	ENSP00000432376	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	het	1
19	11	27676494	A	-TATAT	ENST00000584049	ENSG00000176697	27676440	27743605	-	BDNF	-1	-	c.3971_3975del	p.I1325NA	non-syn	NA	-	-	lod=2374:800	-	-	-	het	1
20	11	27676574	A	+T	ENST00000314915	ENSG00000176697	27676440	27743605	ENSP00000320002	BDNF	-1	BDNF_HUMAN	-	-	3'_UTR	NA	-	-	lod=2374:800	-	-	-	hom	1

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Transcripts and variants in the surrounding BDNF 11:27676440..27743605 region Gbrowse