mvTool v3: Added variant data from 40,000 people, Asians and Sadinians, meta-AF reference, new single variant report
May 23, 2019 Dr. Lishuang SHEN 0
mvTool v3: Added variant data from 40,000 people, Asians and Sardinians, meta AF reference, new single variant report
Added over mtDNA variant data from over 40,000 people, derived from multiple Asian and other populations. Of note is the Japanese population allele frequency panel of 3,552 individuals (3.5KJPNv2 https://jmorp.megabank.tohoku.ac.jp).
MSeqDR constructed the meta-population AF reference, which provide position-specific variant information for up to 90,000 people at some positions.
Data was derived from mito-WGS, or from WES (Details in separate text).
For single variant annotation, a new report button supports converting of the annotation into vertical tables for alternative view in different directions.
Categories: MSeqDr.org News, updates, media report
- MSeqDr joins FAIRsharing – A curated, informative and educational resource on data and metadata standards
- Quick-Mitome version 2 with new annotations, workflow, and tutorial
- Mondo Disease Ontology is coming to MSeqDR
- Disease Portal for mitochondrial diseases received more disease entries
- MSeqDR to present tutorial workshop for the 5th year on June 29, at the UMDF Mitochondrial Medicine Symposium
- mvTool v3: Added variant data from 40,000 people, Asians and Sadinians, meta-AF reference, new single variant report
- Leigh Syndrome Resources at MSeqDR.org
- MSeqDR’s ClinVar style variant submission system supports ClinVar template v4.2 (2018.08)
- MSeqDR mvTool Documentation
- Quick-Mitome is updated with Exomiser V10.1, ID de-identification, WES and WGS data support