MSeqDR Central Portal

About
MSeqDR-LSDB
Tools
- Quick-Mitome for WES
- Quick-Mitome
- Quick-Mitome Report
- mtDNA Tool:
- mvTool
- Phy-Mer
- MToolBox
- mvTool for Haplogroup
- mvTool with HmtDB
- MitoMaster
- MitoTIP tRNA Scoring
- MSeq-OpenCGA
- Variant Tool:
- VariantOneStop
- HBCR Exome (Retired)
- POLG Patho. Server
- Data - Awsomics GeEx
- Expert Panel
- Panel Tool:
- Gene Panel Examiner
- Transgenomic_NuclearMitome
- Pedigree Maker
- json2table
Phenome-Disease
PMD-VR_Virtual Registry
Collaboration
Submission
- Submit_Interpret_Variant
- Instructions

Hello! Guest! Please Login or Register! Clinician Mode

Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term MT-RNR2:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000210082	MT-RNR2	1	346	2	ENSG00000210082	ENST00000387347		mitochondrially encoded 16S RNA [Source:HGNC Symbol;Acc:7471]	M	1671	3229	1		1671	3229	MT-RNR2	MT-RNR2-201	HGNC Symbol	HGNC transcript name	1	42.81	Mt_rRNA	Mt_rRNA	insdc	insdc	KNOWN	KNOWN	100616263	7471	MT-RNR2		100965601

MSeqDR Master Exome Data Set M1: 92 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	M	1676	A	G	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.6A>G	-	-	NA	-	-	-	-	-	-	hom	1
2	M	1694	T	C	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.24T>C	-	-	NA	-	-	-	-	-	-	hom	1
3	M	1700	T	C	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.30T>C	-	-	rs2854126	-	-	-	-	-	-	hom	3
4	M	1703	C	T	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.33C>T	-	-	NA	-	-	-	-	-	-	hom	10
5	M	1706	C	T	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.36C>T	-	-	NA	-	-	-	-	-	-	hom	1
6	M	1709	G	A	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.39G>A	-	-	rs75541259	-	-	-	-	-	-	hom	6
7	M	1715	C	T	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.45C>T	-	-	rs28658366	-	-	-	-	-	-	hom	1
8	M	1717	T	C	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.47T>C	-	-	NA	-	-	-	-	-	-	hom	1
9	M	1719	G	A	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.49G>A	-	-	rs3928305	-	-	-	-	-	-	hom	31
10	M	1721	C	T	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.51C>T	-	-	NA	-	-	-	-	-	-	hom	8
11	M	1733	C	T	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.63C>T	-	-	NA	-	-	-	-	-	-	hom	10
12	M	1736	A	G	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.66A>G	-	-	rs111987050	-	-	-	-	-	-	hom	18
13	M	1738	T	C	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.68T>C	-	-	rs28358575	-	-	-	-	-	-	hom	2
14	M	1760	G	A	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.90G>A	-	-	NA	-	-	-	-	-	-	het	1
15	M	1811	A	G	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.141A>G	-	-	rs111878013	-	-	-	-	-	-	hom	75
16	M	1822	T	C	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.152T>C	-	-	NA	-	-	-	-	-	-	hom	4
17	M	1824	T	C	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.154T>C	-	-	rs7481453	-	-	-	-	-	-	hom	2
18	M	1850	T	C	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.180T>C	-	-	NA	-	-	lod=145:501	-	-	-	hom	3
19	M	1888	G	A	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.218G>A	-	-	rs111458338	-	-	lod=31:336	-	-	-	hom	52
20	M	1888	G	A	ENST00000387347	ENSG00000210082	1671	3229	-	MT-RNR2	1	-	c.218G>A	-	-	rs111458338	-	-	lod=31:336	-	-	-	het	1

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding MT-RNR2 M:1671..3229 region Gbrowse