MSeqDR Central Portal

About
MSeqDR-LSDB
Tools
- Quick-Mitome for WES
- Quick-Mitome
- Quick-Mitome Report
- mtDNA Tool:
- mvTool
- Phy-Mer
- MToolBox
- mvTool for Haplogroup
- mvTool with HmtDB
- MitoMaster
- MitoTIP tRNA Scoring
- MSeq-OpenCGA
- Variant Tool:
- VariantOneStop
- HBCR Exome (Retired)
- POLG Patho. Server
- Data - Awsomics GeEx
- Expert Panel
- Panel Tool:
- Gene Panel Examiner
- Transgenomic_NuclearMitome
- Pedigree Maker
- json2table
Phenome-Disease
PMD-VR_Virtual Registry
Collaboration
Submission
- Submit_Interpret_Variant
- Instructions

Hello! Guest! Please Login or Register! Clinician Mode

Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term FOXG1:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000176165	FOXG1	1	0	123	ENSG00000176165	ENST00000382535	ENSP00000371975	forkhead box G1 [Source:HGNC Symbol;Acc:3811]	14	29235050	29238870	1	q12	29235050	29238870	FOXG1	FOXG1-201	HGNC Symbol	HGNC transcript name	2	58.13	protein_coding	protein_coding	ensembl_hava	ensembl	KNOWN	KNOWN	2290	3811	FOXG1		27520

MSeqDR Master Exome Data Set M1: 44 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	14	29236457	C	T	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	-	-	5'_UTR	NA	-	-	lod=239:554	-	-	-	het	1
2	14	29236457	C	T	ENST00000382535	ENSG00000176165	29235050	29238870	ENSP00000371975	FOXG1	1	FOXG1_HUMAN	-	-	5'_UTR	NA	-	-	lod=239:554	-	-	-	het	1
3	14	29236583	A	C	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	c.98A>C	p.H33P	non-syn	NA	-	-	lod=468:626	DAMAGING	NA	-	het	1
4	14	29236583	A	C	ENST00000382535	ENSG00000176165	29235050	29238870	ENSP00000371975	FOXG1	1	FOXG1_HUMAN	c.98A>C	p.H33P	non-syn	NA	-	-	lod=468:626	DAMAGING	NA	-	het	1
5	14	29236655	A	C	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	c.170A>C	p.H57P	non-syn	NA	-	-	lod=66:417	TOLERATED	NA	-	het	1
6	14	29236655	A	C	ENST00000382535	ENSG00000176165	29235050	29238870	ENSP00000371975	FOXG1	1	FOXG1_HUMAN	c.170A>C	p.H57P	non-syn	NA	-	-	lod=66:417	TOLERATED	NA	-	het	1
7	14	29236932	C	T	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	c.447C>T	p.A149A	syn	NA	-	-	lod=6846:913	-	-	-	het	2
8	14	29236932	C	T	ENST00000382535	ENSG00000176165	29235050	29238870	ENSP00000371975	FOXG1	1	FOXG1_HUMAN	c.447C>T	p.A149A	syn	NA	-	-	lod=6846:913	-	-	-	het	2
9	14	29236974	C	T	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	c.489C>T	p.G163G	syn	NA	-	T=7/C=8535;T=1/C=4331;T=8/C=12866	lod=6846:913	-	-	-	het	1
10	14	29236974	C	T	ENST00000382535	ENSG00000176165	29235050	29238870	ENSP00000371975	FOXG1	1	FOXG1_HUMAN	c.489C>T	p.G163G	syn	NA	-	T=7/C=8535;T=1/C=4331;T=8/C=12866	lod=6846:913	-	-	-	het	1
11	14	29237543	A	G	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	c.1058A>G	p.N353S	non-syn	NA	-	-	lod=6846:913	DAMAGING	P	-	het	1
12	14	29237543	A	G	ENST00000382535	ENSG00000176165	29235050	29238870	ENSP00000371975	FOXG1	1	FOXG1_HUMAN	c.1058A>G	p.N353S	non-syn	NA	-	-	lod=6846:913	DAMAGING	P	-	het	1
13	14	29237805	C	G	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	c.1320C>G	p.S440S	syn	NA	-	-	lod=6846:913	-	-	-	het	1
14	14	29237805	C	G	ENST00000382535	ENSG00000176165	29235050	29238870	ENSP00000371975	FOXG1	1	FOXG1_HUMAN	c.1320C>G	p.S440S	syn	NA	-	-	lod=6846:913	-	-	-	het	1
15	14	29237968	C	A	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	-	-	3'_UTR	rs151157846	0.01484	A=135/C=8465;A=18/C=4388;A=153/C=12853	lod=6846:913	-	-	-	het	26
16	14	29237968	C	A	ENST00000382535	ENSG00000176165	29235050	29238870	ENSP00000371975	FOXG1	1	FOXG1_HUMAN	-	-	3'_UTR	rs151157846	0.01484	A=135/C=8465;A=18/C=4388;A=153/C=12853	lod=6846:913	-	-	-	het	26
17	14	29238047	G	+C	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	-	-	3'_UTR	rs11433787	-	-	lod=6846:913	-	-	-	hom	1
18	14	29238047	G	+C	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	-	-	3'_UTR	rs11433787	-	-	lod=6846:913	-	-	-	het	9
19	14	29238047	G	-C	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	-	-	3'_UTR	rs68024132	-	-	lod=6846:913	-	-	-	het	147
20	14	29238047	G	-C	ENST00000313071	ENSG00000176165	29235050	29238870	ENSP00000339004	FOXG1	1	FOXG1_HUMAN	-	-	3'_UTR	rs68024132	-	-	lod=6846:913	-	-	-	hom	4

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding FOXG1 14:29235050..29238870 region Gbrowse