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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term ENSG00000187288:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000187288	CIDEC	0	0	6	ENSG00000187288	ENST00000336832	ENSP00000338642	cell death-inducing DFFA-like effector c [Source:HGNC Symbol;Acc:24229]	3	9908398	9921938	-1	p25.3	9908398	9920740	CIDEC	CIDEC-001	HGNC Symbol	HGNC transcript name	7	47.2	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	63924	24229	CIDEC	NM_022094	27517

MSeqDR Master Exome Data Set M1: 171 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	3	9908525	A	G	ENST00000336832	ENSG00000187288	9908398	9921938	ENSP00000338642	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs2479	0.75617	-	-	-	-	-	hom	470
2	3	9908525	A	G	ENST00000336832	ENSG00000187288	9908398	9921938	ENSP00000338642	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs2479	0.75617	-	-	-	-	-	het	173
3	3	9908525	A	G	ENST00000383817	ENSG00000187288	9908398	9921938	ENSP00000373328	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs2479	0.75617	-	-	-	-	-	hom	470
4	3	9908525	A	G	ENST00000383817	ENSG00000187288	9908398	9921938	ENSP00000373328	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs2479	0.75617	-	-	-	-	-	het	173
5	3	9908525	A	G	ENST00000423850	ENSG00000187288	9908398	9921938	ENSP00000400649	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs2479	0.75617	-	-	-	-	-	hom	470
6	3	9908525	A	G	ENST00000423850	ENSG00000187288	9908398	9921938	ENSP00000400649	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs2479	0.75617	-	-	-	-	-	het	173
7	3	9908525	A	G	ENST00000455015	ENSG00000187288	9908398	9921938	ENSP00000392975	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs2479	0.75617	-	-	-	-	-	hom	470
8	3	9908525	A	G	ENST00000455015	ENSG00000187288	9908398	9921938	ENSP00000392975	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs2479	0.75617	-	-	-	-	-	het	173
9	3	9908534	A	+G	ENST00000336832	ENSG00000187288	9908398	9921938	ENSP00000338642	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	4
10	3	9908534	A	+G	ENST00000383817	ENSG00000187288	9908398	9921938	ENSP00000373328	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	4
11	3	9908534	A	+G	ENST00000423850	ENSG00000187288	9908398	9921938	ENSP00000400649	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	4
12	3	9908534	A	+G	ENST00000455015	ENSG00000187288	9908398	9921938	ENSP00000392975	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	4
13	3	9908618	T	C	ENST00000336832	ENSG00000187288	9908398	9921938	ENSP00000338642	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
14	3	9908618	T	C	ENST00000383817	ENSG00000187288	9908398	9921938	ENSP00000373328	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
15	3	9908618	T	C	ENST00000423850	ENSG00000187288	9908398	9921938	ENSP00000400649	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
16	3	9908618	T	C	ENST00000455015	ENSG00000187288	9908398	9921938	ENSP00000392975	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
17	3	9908656	C	T	ENST00000336832	ENSG00000187288	9908398	9921938	ENSP00000338642	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs28575453	0.0621	-	-	-	-	-	het	83
18	3	9908656	C	T	ENST00000336832	ENSG00000187288	9908398	9921938	ENSP00000338642	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs28575453	0.0621	-	-	-	-	-	hom	3
19	3	9908656	C	T	ENST00000383817	ENSG00000187288	9908398	9921938	ENSP00000373328	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs28575453	0.0621	-	-	-	-	-	het	83
20	3	9908656	C	T	ENST00000383817	ENSG00000187288	9908398	9921938	ENSP00000373328	CIDEC	-1	CIDEC_HUMAN	-	-	3'_UTR	rs28575453	0.0621	-	-	-	-	-	hom	3

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Transcripts and variants in the surrounding CIDEC 3:9908398..9921938 region Gbrowse