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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term ENSG00000184292:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000184292	TACSTD2	0	0	7	ENSG00000184292	ENST00000371225	ENSP00000360269	tumor-associated calcium signal transducer 2 [Source:HGNC Symbol;Acc:11530]	1	59041099	59043166	-1	p32.1	59041099	59043166	TACSTD2	TACSTD2-001	HGNC Symbol	HGNC transcript name	1	59.38	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	4070	11530	TACSTD2	NM_002353	27511

MSeqDR Master Exome Data Set M1: 44 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	1	59041106	G	T	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	11
2	1	59041106	G	T	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	hom	1
3	1	59041220	C	T	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs7333	0.3768	-	-	-	-	-	het	207
4	1	59041220	C	T	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs7333	0.3768	-	-	-	-	-	hom	28
5	1	59041357	T	C	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
6	1	59041436	T	C	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs9583	0.1937	-	-	-	-	-	hom	15
7	1	59041436	T	C	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs9583	0.1937	-	-	-	-	-	het	132
8	1	59041461	A	G	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs41313365	0.00364	-	-	-	-	-	het	12
9	1	59041577	A	G	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs3551	0.6208	-	-	-	-	-	het	306
10	1	59041577	A	G	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs3551	0.6208	-	-	-	-	-	hom	67
11	1	59041631	G	T	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs80012655	0.0376	-	-	-	-	-	het	10
12	1	59041631	G	T	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs80012655	0.0376	-	-	-	-	-	hom	3
13	1	59041655	T	C	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs41313363	0.15333	-	-	-	-	-	hom	7
14	1	59041655	T	C	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs41313363	0.15333	-	-	-	-	-	het	156
15	1	59041684	C	G	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
16	1	59041691	G	A	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs7355042	0.0317	-	-	-	-	-	het	5
17	1	59041759	G	A	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs72672295	0.0046	-	-	-	-	-	het	2
18	1	59041763	C	T	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs182546579	0.0015	-	-	-	-	-	het	3
19	1	59041809	C	T	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs41311174	0.0941	T=906/C=7690;T=199/C=4205;T=1105/C=11895	-	-	-	-	het	156
20	1	59041809	C	T	ENST00000371225	ENSG00000184292	59041099	59043166	ENSP00000360269	TACSTD2	-1	TACD2_HUMAN	-	-	3'_UTR	rs41311174	0.0941	T=906/C=7690;T=199/C=4205;T=1105/C=11895	-	-	-	-	hom	15

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding TACSTD2 1:59041099..59043166 region Gbrowse