MSeqDR Central Portal

About
MSeqDR-LSDB
Tools
- Quick-Mitome for WES
- Quick-Mitome
- Quick-Mitome Report
- mtDNA Tool:
- mvTool
- Phy-Mer
- MToolBox
- mvTool for Haplogroup
- mvTool with HmtDB
- MitoMaster
- MitoTIP tRNA Scoring
- MSeq-OpenCGA
- Variant Tool:
- VariantOneStop
- HBCR Exome (Retired)
- POLG Patho. Server
- Data - Awsomics GeEx
- Expert Panel
- Panel Tool:
- Gene Panel Examiner
- Transgenomic_NuclearMitome
- Pedigree Maker
- json2table
Phenome-Disease
Collaboration
- Genesis (GEM.App)
- LeighMap
- Expert Panel
- Collaboration Zone
Submission
- Submit_Interpret_Variant
- Instructions

Hello! Guest! Please Login or Register! Clinician Mode

Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term ENSG00000110074:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000110074	FOXRED1	1	80	32	ENSG00000110074	ENST00000524751		FAD-dependent oxidoreductase domain containing 1 [Source:HGNC Symbol;Acc:26927]	11	126138950	126148026	1	q24.2	126139089	126145244	FOXRED1	FOXRED1-019	HGNC Symbol	HGNC transcript name	19	51.05	protein_coding	retained_intron	ensembl_hava	havana	KNOWN	KNOWN	55572	26927	FOXRED1		27504

MSeqDR Master Exome Data Set M1: 381 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	11	126139100	T	C	ENST00000263578	ENSG00000110074	126138950	126148026	ENSP00000263578	FOXRED1	1	FXRD1_HUMAN	-	-	5'_UTR	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	het	364
2	11	126139100	T	C	ENST00000263578	ENSG00000110074	126138950	126148026	ENSP00000263578	FOXRED1	1	FXRD1_HUMAN	-	-	5'_UTR	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	hom	596
3	11	126139100	T	C	ENST00000442061	ENSG00000110074	126138950	126148026	ENSP00000404371	FOXRED1	1	-	-	-	5'_UTR	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	het	364
4	11	126139100	T	C	ENST00000442061	ENSG00000110074	126138950	126148026	ENSP00000404371	FOXRED1	1	-	-	-	5'_UTR	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	hom	596
5	11	126139100	T	C	ENST00000524751	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.12T>C	p.G4G	syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	het	364
6	11	126139100	T	C	ENST00000524751	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.12T>C	p.G4G	syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	hom	596
7	11	126139100	T	C	ENST00000525083	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.35T>C	p.V12A	non-syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	het	364
8	11	126139100	T	C	ENST00000525083	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.35T>C	p.V12A	non-syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	hom	596
9	11	126139100	T	C	ENST00000525770	ENSG00000110074	126138950	126148026	ENSP00000434739	FOXRED1	1	-	-	-	5'_UTR	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	het	364
10	11	126139100	T	C	ENST00000525770	ENSG00000110074	126138950	126148026	ENSP00000434739	FOXRED1	1	-	-	-	5'_UTR	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	hom	596
11	11	126139100	T	C	ENST00000526366	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.14T>C	p.V5A	non-syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	het	364
12	11	126139100	T	C	ENST00000526366	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.14T>C	p.V5A	non-syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	hom	596
13	11	126139100	T	C	ENST00000526525	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.35T>C	p.V12A	non-syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	het	364
14	11	126139100	T	C	ENST00000526525	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.35T>C	p.V12A	non-syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	hom	596
15	11	126139100	T	C	ENST00000527004	ENSG00000110074	126138950	126148026	ENSP00000436374	FOXRED1	1	-	-	-	5'_UTR	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	het	364
16	11	126139100	T	C	ENST00000527004	ENSG00000110074	126138950	126148026	ENSP00000436374	FOXRED1	1	-	-	-	5'_UTR	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	hom	596
17	11	126139100	T	C	ENST00000529802	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.49T>C	p.L17L	syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	het	364
18	11	126139100	T	C	ENST00000529802	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.49T>C	p.L17L	syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	hom	596
19	11	126139100	T	C	ENST00000532101	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.5T>C	p.V2A	non-syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	het	364
20	11	126139100	T	C	ENST00000532101	ENSG00000110074	126138950	126148026	-	FOXRED1	1	-	c.5T>C	p.V2A	non-syn	rs1786702	0.926	C=6532/T=2064;C=2500/T=1902;C=9032/T=3966	-	-	-	-	hom	596

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding FOXRED1 11:126138950..126148026 region Gbrowse