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Hello! Guest! Please Login or Register! Clinician Mode

Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term DPM3:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000179085	DPM3	1	0	3	ENSG00000179085	ENST00000368399	ENSP00000357384	dolichyl-phosphate mannosyltransferase polypeptide 3 [Source:HGNC Symbol;Acc:3007]	1	155112367	155113071	-1	q22	155112367	155112883	DPM3	DPM3-003	HGNC Symbol	HGNC transcript name	3	60.71	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	NOVEL	54344	3007	DPM3	NM_018973	27511

MSeqDR Master Exome Data Set M1: 8 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	1	155112657	G	A	ENST00000341298	ENSG00000179085	155112367	155113071	ENSP00000344338	DPM3	-1	DPM3_HUMAN	c.60C>T	p.A20A	syn	NA	-	-	lod=71:425	-	-	-	het	2
2	1	155112657	G	A	ENST00000368399	ENSG00000179085	155112367	155113071	ENSP00000357384	DPM3	-1	DPM3_HUMAN	c.150C>T	p.A50A	syn	NA	-	-	lod=71:425	-	-	-	het	2
3	1	155112657	G	A	ENST00000368400	ENSG00000179085	155112367	155113071	ENSP00000357385	DPM3	-1	DPM3_HUMAN	c.60C>T	p.A20A	syn	NA	-	-	lod=71:425	-	-	-	het	2
4	1	155112763	G	C	ENST00000341298	ENSG00000179085	155112367	155113071	ENSP00000344338	DPM3	-1	DPM3_HUMAN	-	-	-16bp 3'_splice_site	NA	-	-	-	DAMAGING	NA	-	het	1
5	1	155112763	G	C	ENST00000368399	ENSG00000179085	155112367	155113071	ENSP00000357384	DPM3	-1	DPM3_HUMAN	c.44C>G	p.S15C	non-syn	NA	-	-	-	DAMAGING	NA	-	het	1
6	1	155112842	C	T	ENST00000368399	ENSG00000179085	155112367	155113071	ENSP00000357384	DPM3	-1	DPM3_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	2
7	1	155113004	T	C	ENST00000341298	ENSG00000179085	155112367	155113071	ENSP00000344338	DPM3	-1	DPM3_HUMAN	-	-	5'_UTR	rs41264901	-	-	-	-	-	-	het	3
8	1	155113004	T	C	ENST00000368400	ENSG00000179085	155112367	155113071	ENSP00000357385	DPM3	-1	DPM3_HUMAN	-	-	5'_UTR	rs41264901	-	-	-	-	-	-	het	3

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding DPM3 1:155112367..155113071 region Gbrowse