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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term DCX:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000077279	DCX	1	0	118	ENSG00000077279	ENST00000358070	ENSP00000350776	doublecortin [Source:HGNC Symbol;Acc:2714]	X	110537007	110655603	-1	q23	110537008	110654177	DCX	DCX-002	HGNC Symbol	HGNC transcript name	8	39.48	protein_coding	protein_coding	ensembl_hava	havana	KNOWN	NOVEL	1641	2714	DCX		27516

MSeqDR Master Exome Data Set M1: 443 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	X	110537061	T	C	ENST00000338081	ENSG00000077279	110537007	110655603	ENSP00000337697	DCX	-1	DCX_HUMAN	-	-	3'_UTR	rs41300894	0.00942	-	lod=522:638	-	-	-	hom	4
2	X	110537061	T	C	ENST00000338081	ENSG00000077279	110537007	110655603	ENSP00000337697	DCX	-1	DCX_HUMAN	-	-	3'_UTR	rs41300894	0.00942	-	lod=522:638	-	-	-	het	14
3	X	110537061	T	C	ENST00000356915	ENSG00000077279	110537007	110655603	ENSP00000349385	DCX	-1	DCX_HUMAN	-	-	3'_UTR	rs41300894	0.00942	-	lod=522:638	-	-	-	hom	4
4	X	110537061	T	C	ENST00000356915	ENSG00000077279	110537007	110655603	ENSP00000349385	DCX	-1	DCX_HUMAN	-	-	3'_UTR	rs41300894	0.00942	-	lod=522:638	-	-	-	het	14
5	X	110537061	T	C	ENST00000358070	ENSG00000077279	110537007	110655603	ENSP00000350776	DCX	-1	-	-	-	3'_UTR	rs41300894	0.00942	-	lod=522:638	-	-	-	hom	4
6	X	110537061	T	C	ENST00000358070	ENSG00000077279	110537007	110655603	ENSP00000350776	DCX	-1	-	-	-	3'_UTR	rs41300894	0.00942	-	lod=522:638	-	-	-	het	14
7	X	110537061	T	C	ENST00000371993	ENSG00000077279	110537007	110655603	ENSP00000361061	DCX	-1	DCX_HUMAN	-	-	3'_UTR	rs41300894	0.00942	-	lod=522:638	-	-	-	hom	4
8	X	110537061	T	C	ENST00000371993	ENSG00000077279	110537007	110655603	ENSP00000361061	DCX	-1	DCX_HUMAN	-	-	3'_UTR	rs41300894	0.00942	-	lod=522:638	-	-	-	het	14
9	X	110537200	T	+TA	ENST00000338081	ENSG00000077279	110537007	110655603	ENSP00000337697	DCX	-1	DCX_HUMAN	-	-	3'_UTR	NA	-	-	lod=154:507	-	-	-	het	2
10	X	110537200	T	+TA	ENST00000338081	ENSG00000077279	110537007	110655603	ENSP00000337697	DCX	-1	DCX_HUMAN	-	-	3'_UTR	NA	-	-	lod=154:507	-	-	-	hom	2
11	X	110537200	T	+TA	ENST00000356915	ENSG00000077279	110537007	110655603	ENSP00000349385	DCX	-1	DCX_HUMAN	-	-	3'_UTR	NA	-	-	lod=154:507	-	-	-	het	2
12	X	110537200	T	+TA	ENST00000356915	ENSG00000077279	110537007	110655603	ENSP00000349385	DCX	-1	DCX_HUMAN	-	-	3'_UTR	NA	-	-	lod=154:507	-	-	-	hom	2
13	X	110537200	T	+TA	ENST00000358070	ENSG00000077279	110537007	110655603	ENSP00000350776	DCX	-1	-	-	-	3'_UTR	NA	-	-	lod=154:507	-	-	-	het	2
14	X	110537200	T	+TA	ENST00000358070	ENSG00000077279	110537007	110655603	ENSP00000350776	DCX	-1	-	-	-	3'_UTR	NA	-	-	lod=154:507	-	-	-	hom	2
15	X	110537200	T	+TA	ENST00000371993	ENSG00000077279	110537007	110655603	ENSP00000361061	DCX	-1	DCX_HUMAN	-	-	3'_UTR	NA	-	-	lod=154:507	-	-	-	het	2
16	X	110537200	T	+TA	ENST00000371993	ENSG00000077279	110537007	110655603	ENSP00000361061	DCX	-1	DCX_HUMAN	-	-	3'_UTR	NA	-	-	lod=154:507	-	-	-	hom	2
17	X	110537251	C	A	ENST00000338081	ENSG00000077279	110537007	110655603	ENSP00000337697	DCX	-1	DCX_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	hom	1
18	X	110537251	C	A	ENST00000356915	ENSG00000077279	110537007	110655603	ENSP00000349385	DCX	-1	DCX_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	hom	1
19	X	110537251	C	A	ENST00000358070	ENSG00000077279	110537007	110655603	ENSP00000350776	DCX	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	hom	1
20	X	110537251	C	A	ENST00000371993	ENSG00000077279	110537007	110655603	ENSP00000361061	DCX	-1	DCX_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	hom	1

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding DCX X:110537007..110655603 region Gbrowse