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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term CYCS:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000172115	CYCS	1	0	1	ENSG00000172115	ENST00000305786	ENSP00000307786	cytochrome c, somatic [Source:HGNC Symbol;Acc:19986]	7	25159710	25164980	-1	p15.3	25159710	25164980	CYCS	CYCS-001	HGNC Symbol	HGNC transcript name	4	43.01	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	54205	19986	CYCS	NM_018947	27506

MSeqDR Master Exome Data Set M1: 52 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	7	25160151	T	C	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	rs186452232	0.0029	-	-	-	-	-	het	3
2	7	25160337	C	T	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
3	7	25160348	G	T	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
4	7	25160369	T	C	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	rs73086238	0.02925	-	-	-	-	-	het	39
5	7	25160521	A	C	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
6	7	25160544	G	C	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	rs139509288	0.0131	-	-	-	-	-	het	2
7	7	25160545	A	C	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	3
8	7	25160564	A	T	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
9	7	25160589	C	G	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	hom	1
10	7	25160605	T	C	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	rs190557217	0.0118	-	-	-	-	-	het	2
11	7	25160629	G	A	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	3
12	7	25160755	T	-AA	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
13	7	25160916	A	C	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
14	7	25160988	A	G	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	rs7810784	0.4235	-	-	-	-	-	het	136
15	7	25160988	A	G	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	rs7810784	0.4235	-	-	-	-	-	hom	38
16	7	25161094	G	A	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	rs151325416	0.004	-	-	-	-	-	het	2
17	7	25161098	G	A	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	rs114223517	0.0198	-	-	-	-	-	het	1
18	7	25161133	G	A	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	rs10215217	0.4482	-	-	-	-	-	het	197
19	7	25161133	G	A	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	rs10215217	0.4482	-	-	-	-	-	hom	68
20	7	25161134	C	T	ENST00000305786	ENSG00000172115	25159710	25164980	ENSP00000307786	CYCS	-1	CYC_HUMAN	-	-	3'_UTR	rs73086245	0.1257	-	-	-	-	-	hom	4

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding CYCS 7:25159710..25164980 region Gbrowse