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Hello! Guest! Please Login or Register! Clinician Mode

Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term COX7B2:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000170516	COX7B2	1	0	0	ENSG00000170516	ENST00000396533	ENSP00000379784	cytochrome c oxidase subunit VIIb2 [Source:HGNC Symbol;Acc:24381]	4	46736844	46911252	-1	p12	46736844	46911224	COX7B2	COX7B2-002	HGNC Symbol	HGNC transcript name	5	36.84	protein_coding	protein_coding	ensembl_hava	havana	KNOWN	KNOWN	170712	24381	COX7B2		27524

MSeqDR Master Exome Data Set M1: 13 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	4	46736853	A	T	ENST00000302930	ENSG00000170516	46736844	46911252	ENSP00000305964	COX7B2	-1	CX7B2_HUMAN	-	-	3'_UTR	rs11736008	0.2837	-	-	-	-	-	hom	17
2	4	46736853	A	T	ENST00000302930	ENSG00000170516	46736844	46911252	ENSP00000305964	COX7B2	-1	CX7B2_HUMAN	-	-	3'_UTR	rs11736008	0.2837	-	-	-	-	-	het	178
3	4	46736853	A	T	ENST00000355591	ENSG00000170516	46736844	46911252	ENSP00000347799	COX7B2	-1	CX7B2_HUMAN	-	-	3'_UTR	rs11736008	0.2837	-	-	-	-	-	hom	17
4	4	46736853	A	T	ENST00000355591	ENSG00000170516	46736844	46911252	ENSP00000347799	COX7B2	-1	CX7B2_HUMAN	-	-	3'_UTR	rs11736008	0.2837	-	-	-	-	-	het	178
5	4	46736853	A	T	ENST00000396533	ENSG00000170516	46736844	46911252	ENSP00000379784	COX7B2	-1	CX7B2_HUMAN	-	-	3'_UTR	rs11736008	0.2837	-	-	-	-	-	hom	17
6	4	46736853	A	T	ENST00000396533	ENSG00000170516	46736844	46911252	ENSP00000379784	COX7B2	-1	CX7B2_HUMAN	-	-	3'_UTR	rs11736008	0.2837	-	-	-	-	-	het	178
7	4	46736853	A	T	ENST00000543208	ENSG00000170516	46736844	46911252	ENSP00000437439	COX7B2	-1	CX7B2_HUMAN	-	-	3'_UTR	rs11736008	0.2837	-	-	-	-	-	hom	17
8	4	46736853	A	T	ENST00000543208	ENSG00000170516	46736844	46911252	ENSP00000437439	COX7B2	-1	CX7B2_HUMAN	-	-	3'_UTR	rs11736008	0.2837	-	-	-	-	-	het	178
9	4	46737238	G	A	ENST00000302930	ENSG00000170516	46736844	46911252	ENSP00000305964	COX7B2	-1	CX7B2_HUMAN	-	-	5'_UTR	rs147382142	0.0054	-	-	-	-	-	het	1
10	4	46737238	G	A	ENST00000355591	ENSG00000170516	46736844	46911252	ENSP00000347799	COX7B2	-1	CX7B2_HUMAN	-	-	5'_UTR	rs147382142	0.0054	-	-	-	-	-	het	1
11	4	46737238	G	A	ENST00000396533	ENSG00000170516	46736844	46911252	ENSP00000379784	COX7B2	-1	CX7B2_HUMAN	-	-	5'_UTR	rs147382142	0.0054	-	-	-	-	-	het	1
12	4	46737238	G	A	ENST00000505102	ENSG00000170516	46736844	46911252	ENSP00000423519	COX7B2	-1	-	-	-	5'_UTR	rs147382142	0.0054	-	-	-	-	-	het	1
13	4	46737238	G	A	ENST00000543208	ENSG00000170516	46736844	46911252	ENSP00000437439	COX7B2	-1	CX7B2_HUMAN	-	-	5'_UTR	rs147382142	0.0054	-	-	-	-	-	het	1

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding COX7B2 4:46736844..46911252 region Gbrowse