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MSeqDR Data Summary for the Term VSX1:
Ensembl Gene IDAssociated Gene NameLSDB GenesLSDB VariantsclinVar hitsEnsembl Gene IDEnsembl Transcript IDEnsembl Protein IDDescriptionChrGene StartGene EndStrandBandTranscript Start bpTranscript End bpAssociated Gene NameAssociated Transcript NameAssociated Gene DBAssociated Transcript DBTranscript countpct GC contentGene BiotypeTranscript BiotypeSource GeneSource TranscriptStatus geneStatus transcript EntrezGene IDHGNC IDHGNC SymbolRefSeq mRNASeq region id
ENSG00000100987 MSeqDR Search EnsemblVSX1006ENSG00000100987ENST00000429762ENSP00000401690visual system homeobox 1 [Source:HGNC Symbol;Acc:12723]202505152125062996-1p11.212505152125062767VSX1VSX1-003HGNC SymbolHGNC transcript name1046.77protein_codingprotein_codingensembl_havaensembl_havaKNOWNKNOWN3081312723VSX1NM_00125627227522


MSeqDR Master Exome Data Set M1: 272 entries from same gene

No.ChrPositionReferenceVariantEnsemblTranscriptIDEnsemblGeneIDGene_StartGene_EndEnsemblProteinIDGenestrandUniprotcChangepChangeNaturedbSNPFreqEVSphastConsSIFTPolyphenHGMDtypesamples
12025052099CTENST00000429762ENSG000001009872505152125062996ENSP00000401690VSX1-1VSX1_HUMAN--3'_UTRrs799190270.0367-----het1
22025052119C-TENST00000429762ENSG000001009872505152125062996ENSP00000401690VSX1-1VSX1_HUMAN--3'_UTRNA------het3
32025052119C+TENST00000429762ENSG000001009872505152125062996ENSP00000401690VSX1-1VSX1_HUMAN--3'_UTRNA------het347
42025052119C+TENST00000429762ENSG000001009872505152125062996ENSP00000401690VSX1-1VSX1_HUMAN--3'_UTRNA------hom14
52025052119C+TTENST00000429762ENSG000001009872505152125062996ENSP00000401690VSX1-1VSX1_HUMAN--3'_UTRNA------het10
62025052282CTENST00000409285ENSG000001009872505152125062996ENSP00000386612VSX1-1VSX1_HUMAN--3'_UTRNA------het3
72025052282CTENST00000409958ENSG000001009872505152125062996ENSP00000387069VSX1-1VSX1_HUMAN--3'_UTRNA------het3
82025052282CTENST00000429762ENSG000001009872505152125062996ENSP00000401690VSX1-1VSX1_HUMAN--3'_UTRNA------het3
92025052282CTENST00000444511ENSG000001009872505152125062996ENSP00000387720VSX1-1VSX1_HUMAN--3'_UTRNA------het3
102025052306TAENST00000409285ENSG000001009872505152125062996ENSP00000386612VSX1-1VSX1_HUMAN--3'_UTRNA------het2
112025052306TAENST00000409958ENSG000001009872505152125062996ENSP00000387069VSX1-1VSX1_HUMAN--3'_UTRNA------het2
122025052306TAENST00000429762ENSG000001009872505152125062996ENSP00000401690VSX1-1VSX1_HUMAN--3'_UTRNA------het2
132025052306TAENST00000444511ENSG000001009872505152125062996ENSP00000387720VSX1-1VSX1_HUMAN--3'_UTRNA------het2
142025052308GCENST00000409285ENSG000001009872505152125062996ENSP00000386612VSX1-1VSX1_HUMAN--3'_UTRrs60502960.1052-----het11
152025052308GCENST00000409958ENSG000001009872505152125062996ENSP00000387069VSX1-1VSX1_HUMAN--3'_UTRrs60502960.1052-----het11
162025052308GCENST00000429762ENSG000001009872505152125062996ENSP00000401690VSX1-1VSX1_HUMAN--3'_UTRrs60502960.1052-----het11
172025052308GCENST00000444511ENSG000001009872505152125062996ENSP00000387720VSX1-1VSX1_HUMAN--3'_UTRrs60502960.1052-----het11
182025052412CTENST00000409285ENSG000001009872505152125062996ENSP00000386612VSX1-1VSX1_HUMAN--3'_UTRNA------het1
192025052412CTENST00000409958ENSG000001009872505152125062996ENSP00000387069VSX1-1VSX1_HUMAN--3'_UTRNA------het1
202025052412CTENST00000429762ENSG000001009872505152125062996ENSP00000401690VSX1-1VSX1_HUMAN--3'_UTRNA------het1
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       Transcripts and variants in the surrounding VSX1 20:25051521..25062996 region Gbrowse