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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term USB1:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000103005	USB1	0	0	6	ENSG00000103005	ENST00000561743	ENSP00000454928	U6 snRNA biogenesis 1 [Source:HGNC Symbol;Acc:25792]	16	58033450	58055522	1	q21	58033450	58054446	USB1	USB1-012	HGNC Symbol	HGNC transcript name	15	49.63	protein_coding	protein_coding	ensembl_hava	havana	KNOWN	PUTATIVE	79650	25792	USB1		27514

MSeqDR Master Exome Data Set M1: 265 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	16	58035337	G	C	ENST00000219281	ENSG00000103005	58033450	58055522	ENSP00000219281	USB1	1	USB1_HUMAN	-	-	5'_UTR	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
2	16	58035337	G	C	ENST00000423271	ENSG00000103005	58033450	58055522	ENSP00000409792	USB1	1	USB1_HUMAN	-	-	5'_UTR	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
3	16	58035337	G	C	ENST00000539737	ENSG00000103005	58033450	58055522	ENSP00000446143	USB1	1	USB1_HUMAN	-	-	5'_UTR	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
4	16	58035337	G	C	ENST00000561568	ENSG00000103005	58033450	58055522	ENSP00000457322	USB1	1	-	-	-	5'_UTR	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
5	16	58035337	G	C	ENST00000562534	ENSG00000103005	58033450	58055522	-	USB1	1	-	c.18G>C	p.V6V	syn	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
6	16	58035337	G	C	ENST00000563149	ENSG00000103005	58033450	58055522	ENSP00000454692	USB1	1	-	-	-	5'_UTR	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
7	16	58035337	G	C	ENST00000563207	ENSG00000103005	58033450	58055522	-	USB1	1	-	c.10G>C	p.A4P	non-syn	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
8	16	58035337	G	C	ENST00000564387	ENSG00000103005	58033450	58055522	ENSP00000457302	USB1	1	-	-	-	5'_UTR	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
9	16	58035337	G	C	ENST00000565662	ENSG00000103005	58033450	58055522	-	USB1	1	-	c.27G>C	p.V9V	syn	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
10	16	58035337	G	C	ENST00000566292	ENSG00000103005	58033450	58055522	-	USB1	1	-	c.18G>C	p.V6V	syn	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
11	16	58035337	G	C	ENST00000568848	ENSG00000103005	58033450	58055522	-	USB1	1	-	c.15G>C	p.V5V	syn	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
12	16	58035337	G	C	ENST00000569252	ENSG00000103005	58033450	58055522	-	USB1	1	-	c.18G>C	p.V6V	syn	rs73546949	0.0221	C=0/G=8314;C=44/G=4132;C=44/G=12446	-	-	-	-	het	1
13	16	58035429	C	A	ENST00000219281	ENSG00000103005	58033450	58055522	ENSP00000219281	USB1	1	USB1_HUMAN	c.42C>A	p.S14S	syn	rs3743559	0.0726	A=699/C=7891;A=72/C=4290;A=771/C=12181	lod=143:500	-	-	-	het	62
14	16	58035429	C	A	ENST00000219281	ENSG00000103005	58033450	58055522	ENSP00000219281	USB1	1	USB1_HUMAN	c.42C>A	p.S14S	syn	rs3743559	0.0726	A=699/C=7891;A=72/C=4290;A=771/C=12181	lod=143:500	-	-	-	hom	3
15	16	58035429	C	A	ENST00000423271	ENSG00000103005	58033450	58055522	ENSP00000409792	USB1	1	USB1_HUMAN	c.42C>A	p.S14S	syn	rs3743559	0.0726	A=699/C=7891;A=72/C=4290;A=771/C=12181	lod=143:500	-	-	-	het	62
16	16	58035429	C	A	ENST00000423271	ENSG00000103005	58033450	58055522	ENSP00000409792	USB1	1	USB1_HUMAN	c.42C>A	p.S14S	syn	rs3743559	0.0726	A=699/C=7891;A=72/C=4290;A=771/C=12181	lod=143:500	-	-	-	hom	3
17	16	58035429	C	A	ENST00000539737	ENSG00000103005	58033450	58055522	ENSP00000446143	USB1	1	USB1_HUMAN	c.42C>A	p.S14S	syn	rs3743559	0.0726	A=699/C=7891;A=72/C=4290;A=771/C=12181	lod=143:500	-	-	-	het	62
18	16	58035429	C	A	ENST00000539737	ENSG00000103005	58033450	58055522	ENSP00000446143	USB1	1	USB1_HUMAN	c.42C>A	p.S14S	syn	rs3743559	0.0726	A=699/C=7891;A=72/C=4290;A=771/C=12181	lod=143:500	-	-	-	hom	3
19	16	58035429	C	A	ENST00000561568	ENSG00000103005	58033450	58055522	ENSP00000457322	USB1	1	-	-	-	5'_UTR	rs3743559	0.0726	A=699/C=7891;A=72/C=4290;A=771/C=12181	lod=143:500	-	-	-	het	62
20	16	58035429	C	A	ENST00000561568	ENSG00000103005	58033450	58055522	ENSP00000457322	USB1	1	-	-	-	5'_UTR	rs3743559	0.0726	A=699/C=7891;A=72/C=4290;A=771/C=12181	lod=143:500	-	-	-	hom	3

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding USB1 16:58033450..58055522 region Gbrowse