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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term STT3B:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000163527	STT3B	0	0	1	ENSG00000163527	ENST00000453168		STT3B, subunit of the oligosaccharyltransferase complex (catalytic) [Source:HGNC Symbol;Acc:30611]	3	31574130	31679112	1	p23	31574130	31661766	STT3B	STT3B-002	HGNC Symbol	HGNC transcript name	7	35.96	protein_coding	processed_transcript	ensembl_hava	havana	KNOWN	KNOWN	201595	30611	STT3B		27517

MSeqDR Master Exome Data Set M1: 131 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	3	31574146	G	C	ENST00000453168	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.17G>C	p.R6P	non-syn	NA	-	-	lod=172:519	-	-	-	het	1
2	3	31574164	G	A	ENST00000453168	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.35G>A	p.C12Y	non-syn	NA	-	-	lod=172:519	-	-	-	het	1
3	3	31574258	A	C	ENST00000453168	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.129A>C	p.P43P	syn	rs62234703	0.3333	-	lod=386:606	-	-	-	het	221
4	3	31574258	A	C	ENST00000453168	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.129A>C	p.P43P	syn	rs62234703	0.3333	-	lod=386:606	-	-	-	hom	38
5	3	31574393	T	+TCC	ENST00000295770	ENSG00000163527	31574130	31679112	ENSP00000295770	STT3B	1	STT3B_HUMAN	-	-	5'_UTR	NA	-	-	lod=181:525	-	-	-	het	1
6	3	31574393	T	+TCC	ENST00000453168	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.264_265insTCC	p.S89NA	non-syn	NA	-	-	lod=181:525	-	-	-	het	1
7	3	31574393	T	+TCCTCC	ENST00000295770	ENSG00000163527	31574130	31679112	ENSP00000295770	STT3B	1	STT3B_HUMAN	-	-	5'_UTR	NA	-	-	lod=181:525	-	-	-	het	17
8	3	31574393	T	+TCCTCC	ENST00000453168	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.264_265insTCCTCC	p.S89NA	non-syn	NA	-	-	lod=181:525	-	-	-	het	17
9	3	31574395	C	T	ENST00000295770	ENSG00000163527	31574130	31679112	ENSP00000295770	STT3B	1	STT3B_HUMAN	-	-	5'_UTR	NA	-	-	lod=181:525	-	-	-	het	1
10	3	31574395	C	T	ENST00000453168	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.266C>T	p.S89F	non-syn	NA	-	-	lod=181:525	-	-	-	het	1
11	3	31574413	C	G	ENST00000295770	ENSG00000163527	31574130	31679112	ENSP00000295770	STT3B	1	STT3B_HUMAN	-	-	5'_UTR	NA	-	-	lod=181:525	-	-	-	het	1
12	3	31574413	C	G	ENST00000453168	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.284C>G	p.S95C	non-syn	NA	-	-	lod=181:525	-	-	-	het	1
13	3	31574442	A	+GGC	ENST00000295770	ENSG00000163527	31574130	31679112	ENSP00000295770	STT3B	1	STT3B_HUMAN	-	-	5'_UTR	NA	-	-	lod=181:525	-	-	-	het	1
14	3	31574442	A	+GGC	ENST00000453168	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.313_314insGGC	p.R105NA	non-syn	NA	-	-	lod=181:525	-	-	-	het	1
15	3	31574534	T	G	ENST00000295770	ENSG00000163527	31574130	31679112	ENSP00000295770	STT3B	1	STT3B_HUMAN	c.44T>G	p.L15R	non-syn	NA	-	-	lod=1564:755	DAMAGING	P	-	het	1
16	3	31574534	T	G	ENST00000423527	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.71T>G	p.L24R	non-syn	NA	-	-	lod=1564:755	DAMAGING	P	-	het	1
17	3	31574534	T	G	ENST00000453168	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.405T>G	p.P135P	syn	NA	-	-	lod=1564:755	DAMAGING	P	-	het	1
18	3	31575172	G	C	ENST00000462235	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.56G>C	p.G19A	non-syn	rs73824170	0.6327	-	-	-	-	-	het	1
19	3	31617945	T	C	ENST00000295770	ENSG00000163527	31574130	31679112	ENSP00000295770	STT3B	1	STT3B_HUMAN	c.372T>C	p.N124N	syn	rs150886803	0.0028	C=16/T=8578;C=4/T=4402;C=20/T=12980	lod=907:697	-	-	-	het	8
20	3	31617945	T	C	ENST00000423527	ENSG00000163527	31574130	31679112	-	STT3B	1	-	c.399T>C	p.N133N	syn	rs150886803	0.0028	C=16/T=8578;C=4/T=4402;C=20/T=12980	lod=907:697	-	-	-	het	8

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
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Transcripts and variants in the surrounding STT3B 3:31574130..31679112 region Gbrowse