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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term PLA2G5:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000127472	PLA2G5	0	0	3	ENSG00000127472	ENST00000486277		phospholipase A2, group V [Source:HGNC Symbol;Acc:9038]	1	20354672	20417683	1	p36.13	20354672	20417683	PLA2G5	PLA2G5-002	HGNC Symbol	HGNC transcript name	8	44.61	protein_coding	processed_transcript	ensembl_hava	havana	KNOWN	KNOWN	5322	9038	PLA2G5		27511

MSeqDR Master Exome Data Set M1: 117 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	1	20395401	C	A	ENST00000460175	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.373C>A	p.P125T	non-syn	rs11573185	0.5189	-	-	-	-	-	het	322
2	1	20395401	C	A	ENST00000460175	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.373C>A	p.P125T	non-syn	rs11573185	0.5189	-	-	-	-	-	hom	203
3	1	20395401	C	A	ENST00000465698	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.377C>A	p.P126H	non-syn	rs11573185	0.5189	-	-	-	-	-	het	322
4	1	20395401	C	A	ENST00000465698	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.377C>A	p.P126H	non-syn	rs11573185	0.5189	-	-	-	-	-	hom	203
5	1	20395401	C	A	ENST00000469069	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.400C>A	p.P134T	non-syn	rs11573185	0.5189	-	-	-	-	-	het	322
6	1	20395401	C	A	ENST00000469069	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.400C>A	p.P134T	non-syn	rs11573185	0.5189	-	-	-	-	-	hom	203
7	1	20395401	C	A	ENST00000486277	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.822C>A	p.P274P	syn	rs11573185	0.5189	-	-	-	-	-	het	322
8	1	20395401	C	A	ENST00000486277	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.822C>A	p.P274P	syn	rs11573185	0.5189	-	-	-	-	-	hom	203
9	1	20395401	C	A	ENST00000489871	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.281C>A	p.P94H	non-syn	rs11573185	0.5189	-	-	-	-	-	het	322
10	1	20395401	C	A	ENST00000489871	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.281C>A	p.P94H	non-syn	rs11573185	0.5189	-	-	-	-	-	hom	203
11	1	20395401	C	A	ENST00000498348	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.236C>A	p.P79H	non-syn	rs11573185	0.5189	-	-	-	-	-	het	322
12	1	20395401	C	A	ENST00000498348	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.236C>A	p.P79H	non-syn	rs11573185	0.5189	-	-	-	-	-	hom	203
13	1	20395405	C	T	ENST00000460175	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.377C>T	p.T126M	non-syn	rs190231665	0.00094	-	-	-	-	-	het	3
14	1	20395405	C	T	ENST00000465698	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.381C>T	p.Y127Y	syn	rs190231665	0.00094	-	-	-	-	-	het	3
15	1	20395405	C	T	ENST00000469069	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.404C>T	p.T135M	non-syn	rs190231665	0.00094	-	-	-	-	-	het	3
16	1	20395405	C	T	ENST00000486277	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.826C>T	p.R276C	non-syn	rs190231665	0.00094	-	-	-	-	-	het	3
17	1	20395405	C	T	ENST00000489871	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.285C>T	p.Y95Y	syn	rs190231665	0.00094	-	-	-	-	-	het	3
18	1	20395405	C	T	ENST00000498348	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.240C>T	p.Y80Y	syn	rs190231665	0.00094	-	-	-	-	-	het	3
19	1	20395484	C	T	ENST00000460175	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.456C>T	p.T152T	syn	NA	-	-	-	-	-	-	het	1
20	1	20395484	C	T	ENST00000465698	ENSG00000127472	20354672	20417683	-	PLA2G5	1	-	c.460C>T	p.Q154*	non-syn	NA	-	-	-	-	-	-	het	1

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding PLA2G5 1:20354672..20417683 region Gbrowse