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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term PEX10:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000157911	PEX10	0	0	17	ENSG00000157911	ENST00000288774	ENSP00000288774	peroxisomal biogenesis factor 10 [Source:HGNC Symbol;Acc:8851]	1	2336236	2345236	-1	p36.32	2336236	2343969	PEX10	PEX10-001	HGNC Symbol	HGNC transcript name	9	62.25	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	5192	8851	PEX10	NM_153818	27511

MSeqDR Master Exome Data Set M1: 224 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	1	2336305	C	T	ENST00000288774	ENSG00000157911	2336236	2345236	ENSP00000288774	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	3
2	1	2336305	C	T	ENST00000447513	ENSG00000157911	2336236	2345236	ENSP00000407922	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	3
3	1	2336305	C	T	ENST00000507596	ENSG00000157911	2336236	2345236	ENSP00000424291	PEX10	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	3
4	1	2336351	C	T	ENST00000288774	ENSG00000157911	2336236	2345236	ENSP00000288774	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
5	1	2336351	C	T	ENST00000447513	ENSG00000157911	2336236	2345236	ENSP00000407922	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
6	1	2336351	C	T	ENST00000507596	ENSG00000157911	2336236	2345236	ENSP00000424291	PEX10	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
7	1	2336519	G	C	ENST00000288774	ENSG00000157911	2336236	2345236	ENSP00000288774	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	rs41310349	0.0095	-	-	-	-	-	het	7
8	1	2336519	G	C	ENST00000447513	ENSG00000157911	2336236	2345236	ENSP00000407922	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	rs41310349	0.0095	-	-	-	-	-	het	7
9	1	2336519	G	C	ENST00000507596	ENSG00000157911	2336236	2345236	ENSP00000424291	PEX10	-1	-	-	-	3'_UTR	rs41310349	0.0095	-	-	-	-	-	het	7
10	1	2336562	G	A	ENST00000288774	ENSG00000157911	2336236	2345236	ENSP00000288774	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	rs150136015	0.0076	-	-	-	-	-	het	1
11	1	2336562	G	A	ENST00000447513	ENSG00000157911	2336236	2345236	ENSP00000407922	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	rs150136015	0.0076	-	-	-	-	-	het	1
12	1	2336562	G	A	ENST00000507596	ENSG00000157911	2336236	2345236	ENSP00000424291	PEX10	-1	-	-	-	3'_UTR	rs150136015	0.0076	-	-	-	-	-	het	1
13	1	2336645	C	T	ENST00000288774	ENSG00000157911	2336236	2345236	ENSP00000288774	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
14	1	2336645	C	T	ENST00000447513	ENSG00000157911	2336236	2345236	ENSP00000407922	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
15	1	2336645	C	T	ENST00000507596	ENSG00000157911	2336236	2345236	ENSP00000424291	PEX10	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
16	1	2336646	G	A	ENST00000288774	ENSG00000157911	2336236	2345236	ENSP00000288774	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
17	1	2336646	G	A	ENST00000447513	ENSG00000157911	2336236	2345236	ENSP00000407922	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
18	1	2336646	G	A	ENST00000507596	ENSG00000157911	2336236	2345236	ENSP00000424291	PEX10	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
19	1	2336659	G	A	ENST00000288774	ENSG00000157911	2336236	2345236	ENSP00000288774	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	3
20	1	2336659	G	A	ENST00000447513	ENSG00000157911	2336236	2345236	ENSP00000407922	PEX10	-1	PEX10_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	3

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding PEX10 1:2336236..2345236 region Gbrowse