necdin, melanoma antigen (MAGE) family member [Source:HGNC Symbol;Acc:7675]
15
23930565
23932450
-1
q11.2
23930565
23932450
NDN
NDN-001
HGNC Symbol
HGNC transcript name
1
52.55
protein_coding
protein_coding
ensembl_hava
ensembl_hava
KNOWN
KNOWN
4692
7675
NDN
NM_002487
27521
MSeqDR Master Exome Data Set M1: 17 entries from same gene
No.
Chr
Position
Reference
Variant
EnsemblTranscriptID
EnsemblGeneID
Gene_Start
Gene_End
EnsemblProteinID
Gene
strand
Uniprot
cChange
pChange
Nature
dbSNP
Freq
EVS
phastCons
SIFT
Polyphen
HGMD
type
samples
1
15
23930580
T
-ACAG
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
-
-
3'_UTR
NA
-
-
-
-
-
-
het
2
2
15
23930724
A
C
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
-
-
3'_UTR
rs75438249
0.04368
-
-
-
-
-
het
59
3
15
23930724
A
C
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
-
-
3'_UTR
rs75438249
0.04368
-
-
-
-
-
hom
1
4
15
23931007
A
G
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
-
-
3'_UTR
NA
-
-
lod=15:259
-
-
-
het
2
5
15
23931221
T
-ACACA
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
-
-
3'_UTR
NA
-
-
-
-
-
-
hom
1
6
15
23931297
C
A
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
-
-
3'_UTR
NA
-
-
lod=83:441
-
-
-
het
1
7
15
23931366
G
T
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
-
-
3'_UTR
NA
-
-
-
-
-
-
het
1
8
15
23931412
A
G
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
c.953T>C
p.V318A
non-syn
rs114077338
0.003
G=0/A=8546;G=39/A=4341;G=39/A=12887
lod=40:363
DAMAGING
B
-
het
2
9
15
23931416
T
C
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
c.949A>G
p.S317G
non-syn
rs145312445
0.0061
C=2/T=8542;C=15/T=4375;C=17/T=12917
lod=40:363
DAMAGING
P
-
het
1
10
15
23931507
G
A
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
c.858C>T
p.D286D
syn
rs2192206
0.296
A=1867/G=6727;A=198/G=4204;A=2065/G=10931
lod=189:529
-
-
-
het
290
11
15
23931507
G
A
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
c.858C>T
p.D286D
syn
rs2192206
0.296
A=1867/G=6727;A=198/G=4204;A=2065/G=10931
lod=189:529
-
-
-
hom
52
12
15
23931597
G
A
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
c.768C>T
p.P256P
syn
rs142210120
0.0032
A=3/G=8595;A=17/G=4389;A=20/G=12984
-
-
-
-
het
1
13
15
23931978
G
A
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
c.387C>T
p.I129I
syn
rs145180141
-
A=3/G=8597;A=0/G=4406;A=3/G=13003
lod=167:516
-
-
-
het
1
14
15
23932102
G
A
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
c.263C>T
p.P88L
non-syn
rs114629863
0.0247
A=1/G=8257;A=102/G=4126;A=103/G=12383
-
TOLERATED
B
-
het
1
15
15
23932103
G
T
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
c.262C>A
p.P88T
non-syn
rs200315781
-
-
-
DAMAGING
B
-
het
6
16
15
23932169
C
T
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
c.196G>A
p.D66N
non-syn
NA
-
-
lod=23:304
TOLERATED
P
-
het
1
17
15
23932315
G
A
ENST00000331837
ENSG00000182636
23930565
23932450
ENSP00000332643
NDN
-1
NECD_HUMAN
c.50C>T
p.A17V
non-syn
NA
-
A=0/G=6864;A=1/G=3471;A=1/G=10335
-
TOLERATED
B
-
het
1
** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.
As MSeqDR registered user , your accessible protected data set after login: