MSeqDR Central Portal

About
MSeqDR-LSDB
Tools
- Quick-Mitome for WES
- Quick-Mitome
- Quick-Mitome Report
- mtDNA Tool:
- mvTool
- Phy-Mer
- MToolBox
- mvTool for Haplogroup
- mvTool with HmtDB
- MitoMaster
- MitoTIP tRNA Scoring
- MSeq-OpenCGA
- Variant Tool:
- VariantOneStop
- HBCR Exome (Retired)
- POLG Patho. Server
- Data - Awsomics GeEx
- Expert Panel
- Panel Tool:
- Gene Panel Examiner
- Transgenomic_NuclearMitome
- Pedigree Maker
- json2table
Phenome-Disease
Collaboration
- Genesis (GEM.App)
- LeighMap
- Expert Panel
- Collaboration Zone
Submission
- Submit_Interpret_Variant
- Instructions

Hello! Guest! Please Login or Register! Clinician Mode

Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term MPZ:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000158887	MPZ	0	0	67	ENSG00000158887	ENST00000463290	ENSP00000431538	myelin protein zero [Source:HGNC Symbol;Acc:7225]	1	161274525	161279762	-1	q23.3	161274525	161279744	MPZ	MPZ-002	HGNC Symbol	HGNC transcript name	8	50.52	protein_coding	nonsense_mediated_decay	ensembl_hava	havana	KNOWN	KNOWN	4359	7225	MPZ		27511

MSeqDR Master Exome Data Set M1: 135 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	1	161274565	T	G	ENST00000360451	ENSG00000158887	161274525	161279762	ENSP00000353634	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	NA	-	-	lod=305:581	-	-	-	het	1
2	1	161274565	T	G	ENST00000463290	ENSG00000158887	161274525	161279762	ENSP00000431538	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	NA	-	-	lod=305:581	-	-	-	het	1
3	1	161274565	T	G	ENST00000533357	ENSG00000158887	161274525	161279762	ENSP00000432943	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	NA	-	-	lod=305:581	-	-	-	het	1
4	1	161274618	T	A	ENST00000360451	ENSG00000158887	161274525	161279762	ENSP00000353634	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	rs71639057	-	-	lod=305:581	-	-	-	het	5
5	1	161274618	T	A	ENST00000463290	ENSG00000158887	161274525	161279762	ENSP00000431538	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	rs71639057	-	-	lod=305:581	-	-	-	het	5
6	1	161274618	T	A	ENST00000491222	ENSG00000158887	161274525	161279762	ENSP00000431441	MPZ	-1	-	-	-	3'_UTR	rs71639057	-	-	lod=305:581	-	-	-	het	5
7	1	161274618	T	A	ENST00000533357	ENSG00000158887	161274525	161279762	ENSP00000432943	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	rs71639057	-	-	lod=305:581	-	-	-	het	5
8	1	161274648	G	-C	ENST00000360451	ENSG00000158887	161274525	161279762	ENSP00000353634	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	rs201616916	-	-	-	-	-	-	het	4
9	1	161274648	G	-C	ENST00000463290	ENSG00000158887	161274525	161279762	ENSP00000431538	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	rs201616916	-	-	-	-	-	-	het	4
10	1	161274648	G	-C	ENST00000491222	ENSG00000158887	161274525	161279762	ENSP00000431441	MPZ	-1	-	-	-	3'_UTR	rs201616916	-	-	-	-	-	-	het	4
11	1	161274648	G	-C	ENST00000533357	ENSG00000158887	161274525	161279762	ENSP00000432943	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	rs201616916	-	-	-	-	-	-	het	4
12	1	161274651	C	+T	ENST00000360451	ENSG00000158887	161274525	161279762	ENSP00000353634	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
13	1	161274651	C	+T	ENST00000463290	ENSG00000158887	161274525	161279762	ENSP00000431538	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
14	1	161274651	C	+T	ENST00000491222	ENSG00000158887	161274525	161279762	ENSP00000431441	MPZ	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
15	1	161274651	C	+T	ENST00000533357	ENSG00000158887	161274525	161279762	ENSP00000432943	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
16	1	161274724	C	-CTCCCCCA	ENST00000360451	ENSG00000158887	161274525	161279762	ENSP00000353634	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	rs146717596	-	-	-	-	-	-	het	3
17	1	161274724	C	-CTCCCCCA	ENST00000463290	ENSG00000158887	161274525	161279762	ENSP00000431538	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	rs146717596	-	-	-	-	-	-	het	3
18	1	161274724	C	-CTCCCCCA	ENST00000491222	ENSG00000158887	161274525	161279762	ENSP00000431441	MPZ	-1	-	-	-	3'_UTR	rs146717596	-	-	-	-	-	-	het	3
19	1	161274724	C	-CTCCCCCA	ENST00000533357	ENSG00000158887	161274525	161279762	ENSP00000432943	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	rs146717596	-	-	-	-	-	-	het	3
20	1	161274755	T	+TC	ENST00000360451	ENSG00000158887	161274525	161279762	ENSP00000353634	MPZ	-1	MYP0_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	4

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding MPZ 1:161274525..161279762 region Gbrowse