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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term IFNG:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000111537	IFNG	0	0	9	ENSG00000111537	ENST00000229135	ENSP00000229135	interferon, gamma [Source:HGNC Symbol;Acc:5438]	12	68548548	68553527	-1	q15	68548548	68553527	IFNG	IFNG-001	HGNC Symbol	HGNC transcript name	1	36.04	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	3458	5438	IFNG	NM_000619	27519

MSeqDR Master Exome Data Set M1: 12 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	12	68548770	C	T	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	-	-	3'_UTR	rs55991209	0.0266	-	-	-	-	-	het	2
2	12	68549032	T	-TTGA	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	-	-	3'_UTR	rs137854903	-	-	-	-	-	-	het	4
3	12	68549203	G	A	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	c.431C>T	p.S144L	non-syn	NA	-	-	-	TOLERATED	B	-	het	1
4	12	68549237	T	C	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	c.397A>G	p.I133V	non-syn	NA	-	-	-	TOLERATED	B	-	het	1
5	12	68551774	G	A	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	c.285C>T	p.T95T	syn	rs142375196	-	A=3/G=8597;A=0/G=4404;A=3/G=13001	-	-	-	-	het	1
6	12	68552041	T	-AA	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	-	-	-2bp 3'_splice_site	rs79723178	-	-	lod=21:295	-	-	-	het	188
7	12	68552041	T	-A	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	-	-	-2bp 3'_splice_site	rs2234686	-	-	lod=21:295	-	-	-	het	855
8	12	68552041	T	-A	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	-	-	-2bp 3'_splice_site	rs2234686	-	-	lod=21:295	-	-	-	hom	3
9	12	68553400	T	C	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	-	-	5'_UTR	rs181407537	0.0014	C=7/T=8589;C=0/T=4406;C=7/T=12995	-	-	-	-	het	4
10	12	68553403	G	A	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	1
11	12	68553420	G	T	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	1
12	12	68553477	T	C	ENST00000229135	ENSG00000111537	68548548	68553527	ENSP00000229135	IFNG	-1	IFNG_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	1

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding IFNG 12:68548548..68553527 region Gbrowse