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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term ICK:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000112144	ICK	0	0	3	ENSG00000112144	ENST00000350082	ENSP00000263043	intestinal cell (MAK-like) kinase [Source:HGNC Symbol;Acc:21219]	6	52866077	52926600	-1	p12.1	52866077	52926568	ICK	ICK-001	HGNC Symbol	HGNC transcript name	2	40.86	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	22858	21219	ICK	NM_014920	27515

MSeqDR Master Exome Data Set M1: 102 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	6	52866143	C	-TTACA	ENST00000350082	ENSG00000112144	52866077	52926600	ENSP00000263043	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs200796689	-	-	-	-	-	-	het	15
2	6	52866143	C	-TTACA	ENST00000356971	ENSG00000112144	52866077	52926600	ENSP00000349458	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs200796689	-	-	-	-	-	-	het	15
3	6	52866287	C	T	ENST00000350082	ENSG00000112144	52866077	52926600	ENSP00000263043	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs10950	0.0188	-	-	-	-	-	het	2
4	6	52866287	C	T	ENST00000356971	ENSG00000112144	52866077	52926600	ENSP00000349458	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs10950	0.0188	-	-	-	-	-	het	2
5	6	52866327	T	A	ENST00000350082	ENSG00000112144	52866077	52926600	ENSP00000263043	ICK	-1	ICK_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	7
6	6	52866327	T	A	ENST00000356971	ENSG00000112144	52866077	52926600	ENSP00000349458	ICK	-1	ICK_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	7
7	6	52866436	C	-TA	ENST00000350082	ENSG00000112144	52866077	52926600	ENSP00000263043	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs151300001	-	-	-	-	-	-	het	2
8	6	52866436	C	-TA	ENST00000356971	ENSG00000112144	52866077	52926600	ENSP00000349458	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs151300001	-	-	-	-	-	-	het	2
9	6	52866633	C	G	ENST00000350082	ENSG00000112144	52866077	52926600	ENSP00000263043	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs75506298	0.0197	-	-	-	-	-	het	3
10	6	52866633	C	G	ENST00000356971	ENSG00000112144	52866077	52926600	ENSP00000349458	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs75506298	0.0197	-	-	-	-	-	het	3
11	6	52866787	C	+TTATT	ENST00000350082	ENSG00000112144	52866077	52926600	ENSP00000263043	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs200025702	-	-	-	-	-	-	het	5
12	6	52866787	C	+TTATT	ENST00000356971	ENSG00000112144	52866077	52926600	ENSP00000349458	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs200025702	-	-	-	-	-	-	het	5
13	6	52867072	C	T	ENST00000350082	ENSG00000112144	52866077	52926600	ENSP00000263043	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs141609772	0.0056	-	-	-	-	-	het	2
14	6	52867072	C	T	ENST00000356971	ENSG00000112144	52866077	52926600	ENSP00000349458	ICK	-1	ICK_HUMAN	-	-	3'_UTR	rs141609772	0.0056	-	-	-	-	-	het	2
15	6	52867351	A	G	ENST00000350082	ENSG00000112144	52866077	52926600	ENSP00000263043	ICK	-1	ICK_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
16	6	52867351	A	G	ENST00000356971	ENSG00000112144	52866077	52926600	ENSP00000349458	ICK	-1	ICK_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
17	6	52867671	G	T	ENST00000350082	ENSG00000112144	52866077	52926600	ENSP00000263043	ICK	-1	ICK_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
18	6	52867671	G	T	ENST00000356971	ENSG00000112144	52866077	52926600	ENSP00000349458	ICK	-1	ICK_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
19	6	52867979	G	+A	ENST00000350082	ENSG00000112144	52866077	52926600	ENSP00000263043	ICK	-1	ICK_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	6
20	6	52867979	G	+A	ENST00000356971	ENSG00000112144	52866077	52926600	ENSP00000349458	ICK	-1	ICK_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	6

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding ICK 6:52866077..52926600 region Gbrowse