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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term FOXE3:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000186790	FOXE3	0	0	0	ENSG00000186790	ENST00000335071	ENSP00000334472	forkhead box E3 [Source:HGNC Symbol;Acc:3808]	1	47881744	47883723	1	p33	47881744	47883723	FOXE3	FOXE3-001	HGNC Symbol	HGNC transcript name	1	68.28	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	2301	3808	FOXE3	NM_012186	27511

MSeqDR Master Exome Data Set M1: 38 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	1	47881816	A	G	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	rs148499778	0.006	-	-	-	-	-	het	1
2	1	47881871	G	A	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	3
3	1	47881886	G	A	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	4
4	1	47881898	G	T	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	rs115705313	0.0658	-	-	-	-	-	hom	1
5	1	47881898	G	T	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	rs115705313	0.0658	-	-	-	-	-	het	26
6	1	47881907	T	+G	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	rs137862650	-	-	-	-	-	-	het	18
7	1	47881909	G	A	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	3
8	1	47881909	G	T	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	1
9	1	47881910	G	C	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	1
10	1	47881917	C	G	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	7
11	1	47881939	G	C	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	1
12	1	47881974	G	A	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	rs181190356	0.045	-	-	-	-	-	hom	1
13	1	47881974	G	A	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	rs181190356	0.045	-	-	-	-	-	het	30
14	1	47881981	G	A	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	2
15	1	47881981	G	C	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	2
16	1	47882133	G	C	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	c.146G>C	p.G49A	non-syn	NA	-	-	lod=26:317	TOLERATED	P	HGMD	het	2
17	1	47882181	G	C	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	c.194G>C	p.R65P	non-syn	NA	-	-	lod=1235:730	TOLERATED	P	-	het	2
18	1	47882398	C	A	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	c.411C>A	p.G137G	syn	NA	-	-	lod=1235:730	-	-	-	het	1
19	1	47882410	G	A	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	c.423G>A	p.K141K	syn	rs145081583	0.0039	A=0/G=8598;A=119/G=4287;A=119/G=12885	lod=1235:730	-	-	-	het	1
20	1	47882497	C	T	ENST00000335071	ENSG00000186790	47881744	47883723	ENSP00000334472	FOXE3	1	FOXE3_HUMAN	c.510C>T	p.A170A	syn	rs34082359	0.3846	T=2914/C=5542;T=1084/C=3226;T=3998/C=8768	lod=475:628	-	-	-	het	365

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding FOXE3 1:47881744..47883723 region Gbrowse