MSeqDR Central Portal

About
MSeqDR-LSDB
Tools
- Quick-Mitome for WES
- Quick-Mitome
- Quick-Mitome Report
- mtDNA Tool:
- mvTool
- Phy-Mer
- MToolBox
- mvTool for Haplogroup
- mvTool with HmtDB
- MitoMaster
- MitoTIP tRNA Scoring
- MSeq-OpenCGA
- Variant Tool:
- VariantOneStop
- HBCR Exome (Retired)
- POLG Patho. Server
- Data - Awsomics GeEx
- Expert Panel
- Panel Tool:
- Gene Panel Examiner
- Transgenomic_NuclearMitome
- Pedigree Maker
- json2table
Phenome-Disease
Collaboration
- Genesis (GEM.App)
- LeighMap
- Expert Panel
- Collaboration Zone
Submission
- Submit_Interpret_Variant
- Instructions

Hello! Guest! Please Login or Register! Clinician Mode

Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term FBXO7:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000100225	FBXO7	0	0	5	ENSG00000100225	ENST00000266087	ENSP00000266087	F-box protein 7 [Source:HGNC Symbol;Acc:13586]	22	32870663	32894818	1	q12.3	32870663	32894816	FBXO7	FBXO7-001	HGNC Symbol	HGNC transcript name	10	38.81	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	25793	13586	FBXO7	NM_012179	27510

MSeqDR Master Exome Data Set M1: 237 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	22	32870673	G	A	ENST00000266087	ENSG00000100225	32870663	32894818	ENSP00000266087	FBXO7	1	FBX7_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	3
2	22	32870673	G	A	ENST00000420700	ENSG00000100225	32870663	32894818	ENSP00000406155	FBXO7	1	-	-	-	5'_UTR	NA	-	-	-	-	-	-	het	3
3	22	32870716	G	A	ENST00000266087	ENSG00000100225	32870663	32894818	ENSP00000266087	FBXO7	1	FBX7_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	2
4	22	32870716	G	A	ENST00000420700	ENSG00000100225	32870663	32894818	ENSP00000406155	FBXO7	1	-	-	-	5'_UTR	NA	-	-	-	-	-	-	het	2
5	22	32870716	G	C	ENST00000266087	ENSG00000100225	32870663	32894818	ENSP00000266087	FBXO7	1	FBX7_HUMAN	-	-	5'_UTR	NA	0.0187	-	-	-	-	-	het	2
6	22	32870716	G	C	ENST00000420700	ENSG00000100225	32870663	32894818	ENSP00000406155	FBXO7	1	-	-	-	5'_UTR	NA	0.0187	-	-	-	-	-	het	2
7	22	32870724	G	C	ENST00000266087	ENSG00000100225	32870663	32894818	ENSP00000266087	FBXO7	1	FBX7_HUMAN	-	-	5'_UTR	NA	-	-	-	-	-	-	het	2
8	22	32870724	G	C	ENST00000420700	ENSG00000100225	32870663	32894818	ENSP00000406155	FBXO7	1	-	-	-	5'_UTR	NA	-	-	-	-	-	-	het	2
9	22	32870769	C	T	ENST00000266087	ENSG00000100225	32870663	32894818	ENSP00000266087	FBXO7	1	FBX7_HUMAN	-	-	5'_UTR	rs2072814	0.561	-	lod=28:325	-	-	-	het	321
10	22	32870769	C	T	ENST00000266087	ENSG00000100225	32870663	32894818	ENSP00000266087	FBXO7	1	FBX7_HUMAN	-	-	5'_UTR	rs2072814	0.561	-	lod=28:325	-	-	-	hom	92
11	22	32870769	C	T	ENST00000420700	ENSG00000100225	32870663	32894818	ENSP00000406155	FBXO7	1	-	-	-	5'_UTR	rs2072814	0.561	-	lod=28:325	-	-	-	het	321
12	22	32870769	C	T	ENST00000420700	ENSG00000100225	32870663	32894818	ENSP00000406155	FBXO7	1	-	-	-	5'_UTR	rs2072814	0.561	-	lod=28:325	-	-	-	hom	92
13	22	32870778	C	T	ENST00000266087	ENSG00000100225	32870663	32894818	ENSP00000266087	FBXO7	1	FBX7_HUMAN	-	-	5'_UTR	NA	-	-	lod=28:325	-	-	-	het	2
14	22	32870778	C	T	ENST00000420700	ENSG00000100225	32870663	32894818	ENSP00000406155	FBXO7	1	-	-	-	5'_UTR	NA	-	-	lod=28:325	-	-	-	het	2
15	22	32870806	C	T	ENST00000266087	ENSG00000100225	32870663	32894818	ENSP00000266087	FBXO7	1	FBX7_HUMAN	-	-	5'_UTR	rs11538371	0.1686	-	-	-	-	-	hom	29
16	22	32870806	C	T	ENST00000266087	ENSG00000100225	32870663	32894818	ENSP00000266087	FBXO7	1	FBX7_HUMAN	-	-	5'_UTR	rs11538371	0.1686	-	-	-	-	-	het	195
17	22	32870806	C	T	ENST00000420700	ENSG00000100225	32870663	32894818	ENSP00000406155	FBXO7	1	-	-	-	5'_UTR	rs11538371	0.1686	-	-	-	-	-	hom	29
18	22	32870806	C	T	ENST00000420700	ENSG00000100225	32870663	32894818	ENSP00000406155	FBXO7	1	-	-	-	5'_UTR	rs11538371	0.1686	-	-	-	-	-	het	195
19	22	32870806	C	T	ENST00000425028	ENSG00000100225	32870663	32894818	ENSP00000395823	FBXO7	1	-	-	-	5'_UTR	rs11538371	0.1686	-	-	-	-	-	hom	29
20	22	32870806	C	T	ENST00000425028	ENSG00000100225	32870663	32894818	ENSP00000395823	FBXO7	1	-	-	-	5'_UTR	rs11538371	0.1686	-	-	-	-	-	het	195

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.

Transcripts and variants in the surrounding FBXO7 22:32870663..32894818 region Gbrowse