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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term F13A1:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000124491	F13A1	0	0	16	ENSG00000124491	ENST00000264870	ENSP00000264870	coagulation factor XIII, A1 polypeptide [Source:HGNC Symbol;Acc:3531]	6	6144318	6321246	-1	p25.1	6144318	6321067	F13A1	F13A1-001	HGNC Symbol	HGNC transcript name	6	41.74	protein_coding	protein_coding	ensembl_hava	ensembl_hava	KNOWN	KNOWN	2162	3531	F13A1	NM_000129	27515

MSeqDR Master Exome Data Set M1: 129 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	6	6144367	T	G	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
2	6	6144807	G	C	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs3024487	0.02342	-	-	-	-	-	het	28
3	6	6144807	G	C	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs3024487	0.02342	-	-	-	-	-	hom	1
4	6	6144857	C	A	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs3024466	0.16123	-	-	-	-	-	hom	19
5	6	6144857	C	A	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs3024466	0.16123	-	-	-	-	-	het	182
6	6	6144918	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
7	6	6145109	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs12862	0.1459	-	-	-	-	-	het	14
8	6	6145109	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs12862	0.1459	-	-	-	-	-	hom	1
9	6	6145253	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	NA	-	-	lod=215:543	-	-	-	het	1
10	6	6145265	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs75981686	0.00917	-	lod=215:543	-	-	-	het	9
11	6	6145409	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs3024486	0.05182	-	-	-	-	-	hom	5
12	6	6145409	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs3024486	0.05182	-	-	-	-	-	het	66
13	6	6145582	G	A	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	NA	-	-	lod=58:403	-	-	-	het	1
14	6	6145631	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs3024464	0.1486	-	-	-	-	-	het	13
15	6	6145631	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs3024464	0.1486	-	-	-	-	-	hom	1
16	6	6145644	A	G	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs192234804	0.00271	-	-	-	-	-	het	5
17	6	6145658	A	G	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	NA	-	-	lod=19:284	-	-	-	het	2
18	6	6145669	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
19	6	6145692	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs1050783	0.2577	-	-	-	-	-	hom	28
20	6	6145692	C	T	ENST00000264870	ENSG00000124491	6144318	6321246	ENSP00000264870	F13A1	-1	F13A_HUMAN	-	-	3'_UTR	rs1050783	0.2577	-	-	-	-	-	het	238

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Transcripts and variants in the surrounding F13A1 6:6144318..6321246 region Gbrowse