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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term DEPDC5:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000100150	DEPDC5	0	0	13	ENSG00000100150	ENST00000462414		DEP domain containing 5 [Source:HGNC Symbol;Acc:18423]	22	32149944	32303012	1	q12.2	32229835	32234707	DEPDC5	DEPDC5-015	HGNC Symbol	HGNC transcript name	26	45.23	protein_coding	processed_transcript	ensembl_hava	havana	KNOWN	PUTATIVE	9681	18423	DEPDC5		27510

MSeqDR Master Exome Data Set M1: 888 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	22	32149964	G	C	ENST00000437411	ENSG00000100150	32149944	32303012	ENSP00000416314	DEPDC5	1	-	-	-	5'_UTR	NA	-	-	lod=72:426	-	-	-	het	1
2	22	32149964	G	C	ENST00000469969	ENSG00000100150	32149944	32303012	-	DEPDC5	1	-	c.9G>C	p.R3R	syn	NA	-	-	lod=72:426	-	-	-	het	1
3	22	32149984	T	C	ENST00000437411	ENSG00000100150	32149944	32303012	ENSP00000416314	DEPDC5	1	-	-	-	+2bp 5'_splice_site	NA	-	-	lod=72:426	-	-	-	het	1
4	22	32149984	T	C	ENST00000456178	ENSG00000100150	32149944	32303012	ENSP00000405351	DEPDC5	1	-	-	-	+2bp 5'_splice_site	NA	-	-	lod=72:426	-	-	-	het	1
5	22	32149984	T	C	ENST00000469969	ENSG00000100150	32149944	32303012	-	DEPDC5	1	-	-	-	+2bp 5'_splice_site	NA	-	-	lod=72:426	-	-	-	het	1
6	22	32149984	T	C	ENST00000535622	ENSG00000100150	32149944	32303012	ENSP00000440210	DEPDC5	1	DEPD5_HUMAN	-	-	+2bp 5'_splice_site	NA	-	-	lod=72:426	-	-	-	het	1
7	22	32150850	A	G	ENST00000266091	ENSG00000100150	32149944	32303012	ENSP00000266091	DEPDC5	1	DEPD5_HUMAN	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
8	22	32150850	A	G	ENST00000382105	ENSG00000100150	32149944	32303012	ENSP00000371539	DEPDC5	1	-	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
9	22	32150850	A	G	ENST00000382111	ENSG00000100150	32149944	32303012	ENSP00000371545	DEPDC5	1	DEPD5_HUMAN	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
10	22	32150850	A	G	ENST00000382112	ENSG00000100150	32149944	32303012	ENSP00000371546	DEPDC5	1	DEPD5_HUMAN	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
11	22	32150850	A	G	ENST00000400242	ENSG00000100150	32149944	32303012	ENSP00000383101	DEPDC5	1	DEPD5_HUMAN	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
12	22	32150850	A	G	ENST00000400246	ENSG00000100150	32149944	32303012	ENSP00000383105	DEPDC5	1	DEPD5_HUMAN	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
13	22	32150850	A	G	ENST00000400248	ENSG00000100150	32149944	32303012	ENSP00000383107	DEPDC5	1	DEPD5_HUMAN	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
14	22	32150850	A	G	ENST00000400249	ENSG00000100150	32149944	32303012	ENSP00000383108	DEPDC5	1	DEPD5_HUMAN	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
15	22	32150850	A	G	ENST00000437411	ENSG00000100150	32149944	32303012	ENSP00000416314	DEPDC5	1	-	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
16	22	32150850	A	G	ENST00000456178	ENSG00000100150	32149944	32303012	ENSP00000405351	DEPDC5	1	-	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
17	22	32150850	A	G	ENST00000469969	ENSG00000100150	32149944	32303012	-	DEPDC5	1	-	c.30A>G	p.G10G	syn	NA	-	-	lod=51:389	-	-	-	het	14
18	22	32150850	A	G	ENST00000535622	ENSG00000100150	32149944	32303012	ENSP00000440210	DEPDC5	1	DEPD5_HUMAN	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
19	22	32150850	A	G	ENST00000536766	ENSG00000100150	32149944	32303012	ENSP00000441358	DEPDC5	1	-	-	-	5'_UTR	NA	-	-	lod=51:389	-	-	-	het	14
20	22	32150971	T	C	ENST00000266091	ENSG00000100150	32149944	32303012	ENSP00000266091	DEPDC5	1	DEPD5_HUMAN	-	-	+6bp 5'_splice_site	NA	-	-	lod=191:531	-	-	-	het	2

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

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Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding DEPDC5 22:32149944..32303012 region Gbrowse