MSeqDR Central Portal

MSeqDR Data Summary for the Term TREX1:
Ensembl Gene IDAssociated Gene NameLSDB GenesLSDB VariantsclinVar hitsEnsembl Gene IDEnsembl Transcript IDEnsembl Protein IDDescriptionChrGene StartGene EndStrandBandTranscript Start bpTranscript End bpAssociated Gene NameAssociated Transcript NameAssociated Gene DBAssociated Transcript DBTranscript countpct GC contentGene BiotypeTranscript BiotypeSource GeneSource TranscriptStatus geneStatus transcript EntrezGene IDHGNC IDHGNC SymbolRefSeq mRNASeq region id
ENSG00000213689 MSeqDR Search EnsemblTREX10021ENSG00000213689ENST00000395677three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:12269]348506445485090441p21.314850644548509044TREX1TREX1-001HGNC SymbolHGNC transcript name861.38protein_codingretained_intronensembl_havahavanaKNOWNKNOWN8412612269TREX127517


MSeqDR Master Exome Data Set M1: 166 entries from same gene

No.ChrPositionReferenceVariantEnsemblTranscriptIDEnsemblGeneIDGene_StartGene_EndEnsemblProteinIDGenestrandUniprotcChangepChangeNaturedbSNPFreqEVSphastConsSIFTPolyphenHGMDtypesamples
1348506448CTENST00000296443ENSG000002136894850644548509044ENSP00000296443TREX11TREX1_HUMAN--5'_UTRrs360414040.0154T=1/C=8599;T=229/C=4177;T=230/C=12776lod=19:284---het3
2348506448CTENST00000395677ENSG000002136894850644548509044-TREX11-c.4C>Tp.H2Ynon-synrs360414040.0154T=1/C=8599;T=229/C=4177;T=230/C=12776lod=19:284---het3
3348507165CTENST00000296443ENSG000002136894850644548509044ENSP00000296443TREX11TREX1_HUMAN--5'_UTRNA------het1
4348507165CTENST00000395677ENSG000002136894850644548509044-TREX11-c.318C>Tp.P106PsynNA------het1
5348507182AGENST00000296443ENSG000002136894850644548509044ENSP00000296443TREX11TREX1_HUMAN--5'_UTRrs124860460.0224-----hom1
6348507182AGENST00000296443ENSG000002136894850644548509044ENSP00000296443TREX11TREX1_HUMAN--5'_UTRrs124860460.0224-----het19
7348507182AGENST00000395677ENSG000002136894850644548509044-TREX11-c.335A>Gp.D112Gnon-synrs124860460.0224-----hom1
8348507182AGENST00000395677ENSG000002136894850644548509044-TREX11-c.335A>Gp.D112Gnon-synrs124860460.0224-----het19
9348507667TCENST00000296443ENSG000002136894850644548509044ENSP00000296443TREX11TREX1_HUMAN--5'_UTRrs31359410.1552-----het37
10348507667TCENST00000296443ENSG000002136894850644548509044ENSP00000296443TREX11TREX1_HUMAN--5'_UTRrs31359410.1552-----hom8
11348507667TCENST00000395677ENSG000002136894850644548509044-TREX11-c.820T>Cp.C274Rnon-synrs31359410.1552-----het37
12348507667TCENST00000395677ENSG000002136894850644548509044-TREX11-c.820T>Cp.C274Rnon-synrs31359410.1552-----hom8
13348507667TCENST00000422277ENSG000002136894850644548509044ENSP00000390478TREX11TREX1_HUMAN--5'_UTRrs31359410.1552-----het37
14348507667TCENST00000422277ENSG000002136894850644548509044ENSP00000390478TREX11TREX1_HUMAN--5'_UTRrs31359410.1552-----hom8
15348507667TCENST00000433541ENSG000002136894850644548509044ENSP00000412404TREX11---5'_UTRrs31359410.1552-----het37
16348507667TCENST00000433541ENSG000002136894850644548509044ENSP00000412404TREX11---5'_UTRrs31359410.1552-----hom8
17348507667TCENST00000436480ENSG000002136894850644548509044ENSP00000392569TREX11TREX1_HUMAN--5'_UTRrs31359410.1552-----het37
18348507667TCENST00000436480ENSG000002136894850644548509044ENSP00000392569TREX11TREX1_HUMAN--5'_UTRrs31359410.1552-----hom8
19348507667TCENST00000456089ENSG000002136894850644548509044ENSP00000411331TREX11---5'_UTRrs31359410.1552-----het37
20348507667TCENST00000456089ENSG000002136894850644548509044ENSP00000411331TREX11---5'_UTRrs31359410.1552-----hom8
** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:



Select a dataset from the above drop-down list,
**click here to view variant details for this gene in selected data set**,
and click "Export" button to save as csv.
  


       Transcripts and variants in the surrounding TREX1 3:48506445..48509044 region Gbrowse