Human Phenotype Ontology

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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

Grandparent Node:
Abnormality of the cerebral subcortex (HP:0010993)

Parent Node:
Abnormality of the basal ganglia (HP:0002134)

..Starting node
..Neuronal loss in basal ganglia (HP:0200147)

Term ID:

200147

Name:

Neuronal loss in basal ganglia

Synonym:

Definition:

A reduction in the number of nerve cells in the basal ganglia.

Comments:

Reference:

HP:0200147

Genes and Diseases:

Child Nodes:

Sister Nodes:

Abnormal basal ganglia MRI signal intensity (HP:0012751)

Abnormal corpus striatum morphology (HP:0010994)

Abnormal globus pallidus morphology (HP:0002453)

Abnormal substantia nigra morphology (HP:0045007)

Basal ganglia calcification (HP:0002135)

Basal ganglia cysts (HP:0006799)

Basal ganglia edema (HP:0025039)

Basal ganglia gliosis (HP:0006999)

Basal ganglia necrosis (HP:0012128)

Bilateral basal ganglia lesions (HP:0007146)

Cavitation of the basal ganglia (HP:0007007)

Dysgenesis of the basal ganglia (HP:0025102)

Hemiballismus (HP:0100248)

Large basal ganglia (HP:0007048)

Small basal ganglia (HP:0012697)

Status cribrosum (HP:0025012)

Symmetric lesions of the basal ganglia (HP:0007039)

Input	HPO ID	HPO term	Distance	Gene	Gene id entrez	DiseaseId	DiseaseName	DiseaseMIM	ConceptID	Source	Typical association	ClinVar variants	HGNC ID	GeneMIM
HPO disease - gene - phenotype typical associations:
HP:0200147	HP:0200147	Neuronal loss in basal ganglia	0	HTT CL E G H	3064	248111				ORPHA	1	760	4851	613004
HP:0200147	HP:0200147	Neuronal loss in basal ganglia	0	MAPT CL E G H	4137	601104	Progressive supranuclear ophthalmoplegia	601104	C0038868	OMIM	1	581	6893	157140
HP:0200147	HP:0200147	Neuronal loss in basal ganglia	0	SCO2 CL E G H	9997	604377	Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency	604377	C1858424	OMIM	1	701	10604	604272
HP:0200147	HP:0200147	Neuronal loss in basal ganglia	0	VRK1 CL E G H	7443	607596	Pontocerebellar hypoplasia type 1A	607596	CN032785	OMIM	1	461	12718	602168
HPO disease - gene - phenotype less frequent non-typical associations:

Genes (4) :HTT MAPT SCO2 VRK1

Diseases (4) :248111 601104 604377 607596

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is August 2021 release.