Human Phenotype Ontology 
Grandparent Node:
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Localized skin lesion (HP:0011355)help
Parent Node:
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Sacrococcygeal pilonidal abnormality (HP:0010767)help
Parent Node:
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Skin dimple (HP:0010781)help
..Starting node
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Sacral dimple (HP:0000960)help
Term ID: 960
Name: Sacral dimple
Synonym: Pilonidal dimple; Spinal dimple
Definition: A cutaneous indentation resulting from tethering of the skin to underlying structures (bone) of the intergluteal cleft.
Comments:
Reference: HP:0000960
Genes and Diseases:
 
       Child Nodes:

 Sister Nodes: 
..expandHand dimple (HP:0040251) help
..expandShoulder dimple (HP:0010782) help
..expandSkin dimple over apex of long bone angulation (HP:0001024) help
InputHPO IDHPO termDistanceGeneGene id entrezHGNC IDDiseaseIdDiseaseNameFrequencyOnsetHGMD variantsClinVar variants
 
HPO disease - gene - phenotype typical associations:
 
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0000960HP:0000960Sacral dimple0AEBP1 CL E G H165303ORPHA:536532Classical-like Ehlers-Danlos syndrome type 2HP:0040283 - Occasional
HP:0000960HP:0000960Sacral dimple0AFF3 CL E G H38996473OMIM:619297KINSSHIP SYNDROME; KINS1
HP:0000960HP:0000960Sacral dimple0ANK1 CL E G H286492ORPHA:2510668p11.2 deletion syndromeHP:0040283 - Occasional150
HP:0000960HP:0000960Sacral dimple0ARID1B CL E G H5749218040OMIM:135900Coffin-Siris syndrome 1219
HP:0000960HP:0000960Sacral dimple0ASXL1 CL E G H17102318318OMIM:605039Bohring-Opitz syndrome.145
HP:0000960HP:0000960Sacral dimple0B3GLCT CL E G H14517320207ORPHA:709Peters plus syndromeHP:0040283 - Occasional36
HP:0000960HP:0000960Sacral dimple0B9D2 CL E G H8077628636OMIM:614175Meckel syndrome, type 10.34
HP:0000960HP:0000960Sacral dimple0BAP1 CL E G H8314950OMIM:619762KURY-ISIDOR SYNDROME; KURIS184
HP:0000960HP:0000960Sacral dimple0BAZ1B CL E G H9031961ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0BCL7B CL E G H92751005ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0BUD23 CL E G H11404916405ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0CAMK2G CL E G H8181463OMIM:618522Intellectual developmental disorder 591
HP:0000960HP:0000960Sacral dimple0CAPN15 CL E G H665011182OMIM:619318OCULOGASTROINTESTINAL NEURODEVELOPMENTAL SYNDROME; OGIN
HP:0000960HP:0000960Sacral dimple0CCL2 CL E G H634710618OMIM:182940Neural tube defects, susceptibility to.3
HP:0000960HP:0000960Sacral dimple0CD96 CL E G H1022516892ORPHA:1308C syndromeHP:0040282 - Frequent83
HP:0000960HP:0000960Sacral dimple0CDK10 CL E G H85581770OMIM:617694Al Kaissi syndrome.2
HP:0000960HP:0000960Sacral dimple0CLIP2 CL E G H74612586ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0COLEC10 CL E G H105842220OMIM:2483403MC syndrome 33
HP:0000960HP:0000960Sacral dimple0COX7B CL E G H13492291ORPHA:2556Microphthalmia with linear skin defects syndromeHP:0040283 - Occasional6
HP:0000960HP:0000960Sacral dimple0CPLX1 CL E G H108152309ORPHA:280Wolf-Hirschhorn syndromeHP:0040282 - Frequent1
HP:0000960HP:0000960Sacral dimple0CPLX1 CL E G H108152309OMIM:194190Wolf-Hirschhorn syndromeHP:0040283 - Occasional1
HP:0000960HP:0000960Sacral dimple0CTBP1 CL E G H14872494OMIM:194190Wolf-Hirschhorn syndromeHP:0040283 - Occasional2
HP:0000960HP:0000960Sacral dimple0CTBP1 CL E G H14872494ORPHA:280Wolf-Hirschhorn syndromeHP:0040282 - Frequent2
HP:0000960HP:0000960Sacral dimple0CTCF CL E G H1066413723ORPHA:363611CTCF-related neurodevelopmental disorderHP:0040283 - Occasional20
HP:0000960HP:0000960Sacral dimple0CTCF CL E G H1066413723OMIM:615502Mental retardation, autosomal dominant 2120
HP:0000960HP:0000960Sacral dimple0DCHS1 CL E G H864213681OMIM:601390Van maldergem syndrome 1.27
HP:0000960HP:0000960Sacral dimple0DEAF1 CL E G H1052214677OMIM:615828Mental retardation, autosomal dominant 24HP:0040283 - Occasional33
HP:0000960HP:0000960Sacral dimple0DHCR7 CL E G H17172860OMIM:270400Smith-Lemli-Opitz syndrome159
HP:0000960HP:0000960Sacral dimple0DHPS CL E G H17252869OMIM:618480Neurodevelopmental disorder with seizures and speech and walking impairment.
HP:0000960HP:0000960Sacral dimple0DNAJC30 CL E G H8427716410ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0DVL1 CL E G H18553084ORPHA:3107Autosomal dominant Robinow syndromeHP:0040283 - Occasional14
HP:0000960HP:0000960Sacral dimple0DVL1 CL E G H18553084OMIM:180700Robinow syndrome, autosomal dominant 114
HP:0000960HP:0000960Sacral dimple0DVL1 CL E G H18553084OMIM:616331Robinow syndrome, autosomal dominant 214
HP:0000960HP:0000960Sacral dimple0DVL3 CL E G H18573087ORPHA:3107Autosomal dominant Robinow syndromeHP:0040283 - Occasional5
HP:0000960HP:0000960Sacral dimple0DVL3 CL E G H18573087OMIM:616894ROBINOW SYNDROME, AUTOSOMAL DOMINANT 3; DRS35
HP:0000960HP:0000960Sacral dimple0DYRK1A CL E G H18593091ORPHA:268261DYRK1A-related intellectual disability syndrome due to 21q22.13q22.2 microdeletionHP:0040284 - Very rare134
HP:0000960HP:0000960Sacral dimple0EBP CL E G H106823133ORPHA:401973MEND syndromeHP:0040282 - Frequent51
HP:0000960HP:0000960Sacral dimple0EIF4H CL E G H745812741ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0ELN CL E G H20063327ORPHA:904Williams syndromeHP:0040282 - Frequent172
HP:0000960HP:0000960Sacral dimple0EXTL3 CL E G H21373518ORPHA:508533Skeletal dysplasia-T-cell immunodeficiency-developmental delay syndromeHP:0040283 - Occasional3
HP:0000960HP:0000960Sacral dimple0FANCB CL E G H21873583OMIM:314390VACTERL association, X-linked58
HP:0000960HP:0000960Sacral dimple0FANCF CL E G H21883587OMIM:603467FANCONI ANEMIA, COMPLEMENTATION GROUP F; FANCF87
HP:0000960HP:0000960Sacral dimple0FAT4 CL E G H7963323109OMIM:615546Van maldergem syndrome 2.114
HP:0000960HP:0000960Sacral dimple0FGFRL1 CL E G H538343693OMIM:194190Wolf-Hirschhorn syndromeHP:0040283 - Occasional
HP:0000960HP:0000960Sacral dimple0FKBP6 CL E G H84683722ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0FUZ CL E G H8019926219OMIM:182940Neural tube defects, susceptibility to.3
HP:0000960HP:0000960Sacral dimple0FZD2 CL E G H25354040ORPHA:3107Autosomal dominant Robinow syndromeHP:0040283 - Occasional
HP:0000960HP:0000960Sacral dimple0GNB2 CL E G H27834398OMIM:619503NEURODEVELOPMENTAL DISORDER WITH HYPOTONIA AND DYSMORPHIC FACIES; NEDHYDF
HP:0000960HP:0000960Sacral dimple0GTF2I CL E G H29694659ORPHA:904Williams syndromeHP:0040282 - Frequent1
HP:0000960HP:0000960Sacral dimple0GTF2IRD1 CL E G H95694661ORPHA:904Williams syndromeHP:0040282 - Frequent1
HP:0000960HP:0000960Sacral dimple0GTF2IRD2 CL E G H8416330775ORPHA:904Williams syndromeHP:0040282 - Frequent1
HP:0000960HP:0000960Sacral dimple0H4C5 CL E G H83674790OMIM:619950
HP:0000960HP:0000960Sacral dimple0HCCS CL E G H30524837ORPHA:2556Microphthalmia with linear skin defects syndromeHP:0040283 - Occasional11
HP:0000960HP:0000960Sacral dimple0HIC1 CL E G H30904909ORPHA:531Miller-Dieker syndromeHP:0040283 - Occasional
HP:0000960HP:0000960Sacral dimple0HNRNPK CL E G H31905044OMIM:616580Au-Kline syndrome.8
HP:0000960HP:0000960Sacral dimple0HOXA13 CL E G H32095102ORPHA:2438Hand-foot-genital syndromeHP:0040283 - Occasional11
HP:0000960HP:0000960Sacral dimple0KANSL1 CL E G H28405824565ORPHA:36395817q21.31 microdeletion syndromeHP:0040283 - Occasional283
HP:0000960HP:0000960Sacral dimple0KANSL1 CL E G H28405824565OMIM:610443Koolen-De Vries syndrome.283
HP:0000960HP:0000960Sacral dimple0KANSL1 CL E G H28405824565ORPHA:363965Koolen-De Vries syndrome due to a point mutationHP:0040283 - Occasional283
HP:0000960HP:0000960Sacral dimple0KCNK9 CL E G H513056283OMIM:612292BIRK-BAREL SYNDROME4
HP:0000960HP:0000960Sacral dimple0KCNK9 CL E G H513056283ORPHA:166108Intellectual disability, Birk-Barel typeHP:0040282 - Frequent4
HP:0000960HP:0000960Sacral dimple0KIF15 CL E G H5699217273ORPHA:26132321q22.11q22.12 microdeletion syndromeHP:0040283 - Occasional
HP:0000960HP:0000960Sacral dimple0KMT2A CL E G H42977132OMIM:605130Wiedemann-Steiner syndromeHP:0040283 - Occasional91
HP:0000960HP:0000960Sacral dimple0KMT2A CL E G H42977132ORPHA:319182Wiedemann-Steiner syndromeHP:0040283 - Occasional91
HP:0000960HP:0000960Sacral dimple0LETM1 CL E G H39546556ORPHA:280Wolf-Hirschhorn syndromeHP:0040282 - Frequent2
HP:0000960HP:0000960Sacral dimple0LETM1 CL E G H39546556OMIM:194190Wolf-Hirschhorn syndromeHP:0040283 - Occasional2
HP:0000960HP:0000960Sacral dimple0LIFR CL E G H39776597ORPHA:3206Stüve-Wiedemann syndromeHP:0040283 - Occasional144
HP:0000960HP:0000960Sacral dimple0LIG4 CL E G H39816601ORPHA:235Dubowitz syndromeHP:0040283 - Occasional88
HP:0000960HP:0000960Sacral dimple0LIMK1 CL E G H39846613ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0MAN2C1 CL E G H41236827OMIM:619775CONGENITAL DISORDER OF DEGLYCOSYLATION 2; CDDG2
HP:0000960HP:0000960Sacral dimple0MASP1 CL E G H56486901OMIM:2579203mc syndrome 1.21
HP:0000960HP:0000960Sacral dimple0MED12 CL E G H996811957ORPHA:93932FG syndrome type 1HP:0040283 - Occasional228
HP:0000960HP:0000960Sacral dimple0MED12 CL E G H996811957OMIM:305450Opitz-Kaveggia syndrome.228
HP:0000960HP:0000960Sacral dimple0METTL27 CL E G H15536819068ORPHA:904Williams syndromeHP:0040282 - Frequent1
HP:0000960HP:0000960Sacral dimple0MLXIPL CL E G H5108512744ORPHA:904Williams syndromeHP:0040282 - Frequent1
HP:0000960HP:0000960Sacral dimple0NADSYN1 CL E G H5519129832OMIM:618845VERTEBRAL, CARDIAC, RENAL, AND LIMB DEFECTS SYNDROME 3; VCRL3
HP:0000960HP:0000960Sacral dimple0NCAPG2 CL E G H5489221904OMIM:618460Khan-Khan-Katsanis syndrome.2
HP:0000960HP:0000960Sacral dimple0NCF1 CL E G H6533617660ORPHA:904Williams syndromeHP:0040282 - Frequent13
HP:0000960HP:0000960Sacral dimple0NDUFB11 CL E G H5453920372ORPHA:2556Microphthalmia with linear skin defects syndromeHP:0040283 - Occasional3
HP:0000960HP:0000960Sacral dimple0NELFA CL E G H746912768ORPHA:280Wolf-Hirschhorn syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0NSD2 CL E G H746812766OMIM:619695RAUCH-STEINDL SYNDROME; RAUST118
HP:0000960HP:0000960Sacral dimple0NSD2 CL E G H746812766ORPHA:280Wolf-Hirschhorn syndromeHP:0040282 - Frequent118
HP:0000960HP:0000960Sacral dimple0NSD2 CL E G H746812766OMIM:194190Wolf-Hirschhorn syndromeHP:0040283 - Occasional118
HP:0000960HP:0000960Sacral dimple0NSUN2 CL E G H5488825994ORPHA:235Dubowitz syndromeHP:0040283 - Occasional84
HP:0000960HP:0000960Sacral dimple0NXN CL E G H6435918008ORPHA:1507Autosomal recessive Robinow syndromeHP:0040283 - Occasional2
HP:0000960HP:0000960Sacral dimple0ODC1 CL E G H49538109ORPHA:544488Global developmental delay-alopecia-macrocephaly-facial dysmorphism-structural brain anomalies syndromeHP:0040283 - Occasional1
HP:0000960HP:0000960Sacral dimple0OTUD6B CL E G H5163324281ORPHA:505237Early-onset seizures-distal limb anomalies-facial dysmorphism-global developmental delay syndromeHP:0040282 - Frequent4
HP:0000960HP:0000960Sacral dimple0OTUD6B CL E G H5163324281OMIM:617452Intellectual developmental disorder with dysmorphic facies, seizures, and distal limb anomalies4
HP:0000960HP:0000960Sacral dimple0PAFAH1B1 CL E G H50488574ORPHA:531Miller-Dieker syndromeHP:0040283 - Occasional231
HP:0000960HP:0000960Sacral dimple0PIGG CL E G H5487225985ORPHA:280Wolf-Hirschhorn syndromeHP:0040282 - Frequent7
HP:0000960HP:0000960Sacral dimple0POLA1 CL E G H54229173OMIM:301030Van esch-o'driscoll syndrome2
HP:0000960HP:0000960Sacral dimple0PRR12 CL E G H5747929217OMIM:619539NEUROOCULAR SYNDROME; NOC1
HP:0000960HP:0000960Sacral dimple0PSMD12 CL E G H57189557OMIM:617516Stankiewicz-Isidor syndrome4
HP:0000960HP:0000960Sacral dimple0RAB23 CL E G H5171514263OMIM:201000Carpenter syndrome 131
HP:0000960HP:0000960Sacral dimple0RFC2 CL E G H59829970ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0RMRP CL E G H602310031ORPHA:175Cartilage-hair hypoplasiaHP:0040283 - Occasional37
HP:0000960HP:0000960Sacral dimple0ROR2 CL E G H492010257ORPHA:1507Autosomal recessive Robinow syndromeHP:0040283 - Occasional120
HP:0000960HP:0000960Sacral dimple0RPL10 CL E G H613410298ORPHA:459070X-linked intellectual disability-cerebellar hypoplasia-spondylo-epiphyseal dysplasia syndromeHP:0040283 - Occasional10
HP:0000960HP:0000960Sacral dimple0SCARF2 CL E G H9117919869OMIM:600920Van den Ende-Gupta syndrome11
HP:0000960HP:0000960Sacral dimple0SETD5 CL E G H5520925566OMIM:615761MENTAL RETARDATION, AUTOSOMAL DOMINANT 23; MRD2343
HP:0000960HP:0000960Sacral dimple0SHANK3 CL E G H8535814294ORPHA:48652Monosomy 22q13.3HP:0040282 - Frequent53
HP:0000960HP:0000960Sacral dimple0SHANK3 CL E G H8535814294OMIM:606232Phelan-Mcdermid syndrome53
HP:0000960HP:0000960Sacral dimple0SMG9 CL E G H5600625763OMIM:6199952
HP:0000960HP:0000960Sacral dimple0SPOP CL E G H840511254OMIM:618828NABAIS SA-DE VRIES SYNDROME, TYPE 1; NSDVS116
HP:0000960HP:0000960Sacral dimple0STX1A CL E G H680411433ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0SUGCT CL E G H7978316001ORPHA:35706Glutaric acidemia type 3HP:0040283 - Occasional8
HP:0000960HP:0000960Sacral dimple0TAF1 CL E G H687211535OMIM:300966MENTAL RETARDATION, X-LINKED, SYNDROMIC 33; MRXS3321
HP:0000960HP:0000960Sacral dimple0TBL2 CL E G H2660811586ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0TBX4 CL E G H949611603ORPHA:26127917q23.1q23.2 microdeletion syndromeHP:0040283 - Occasional55
HP:0000960HP:0000960Sacral dimple0TBXT CL E G H686211515OMIM:182940Neural tube defects, susceptibility to.
HP:0000960HP:0000960Sacral dimple0TCF4 CL E G H692511634OMIM:610954Pitt-Hopkins syndrome241
HP:0000960HP:0000960Sacral dimple0TMCO1 CL E G H5449918188OMIM:213980Craniofacial dysmorphism, skeletal anomalies, and mental retardation syndrome.6
HP:0000960HP:0000960Sacral dimple0TMEM270 CL E G H13588623018ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0USP9X CL E G H823912632OMIM:300968Mental retardation, X-linked 99, syndromic, female-restricted27
HP:0000960HP:0000960Sacral dimple0USP9X CL E G H823912632ORPHA:480880X-linked female restricted facial dysmorphism-short stature-choanal atresia-intellectual disabilityHP:0040283 - Occasional27
HP:0000960HP:0000960Sacral dimple0VANGL1 CL E G H8183915512OMIM:182940Neural tube defects, susceptibility to.111
HP:0000960HP:0000960Sacral dimple0VANGL2 CL E G H5721615511OMIM:182940Neural tube defects, susceptibility to.2
HP:0000960HP:0000960Sacral dimple0VPS37D CL E G H15538218287ORPHA:904Williams syndromeHP:0040282 - Frequent
HP:0000960HP:0000960Sacral dimple0WLS CL E G H7997130238OMIM:619648ZAKI SYNDROME; ZKS
HP:0000960HP:0000960Sacral dimple0WNT5A CL E G H747412784ORPHA:3107Autosomal dominant Robinow syndromeHP:0040283 - Occasional98
HP:0000960HP:0000960Sacral dimple0WNT5A CL E G H747412784OMIM:180700Robinow syndrome, autosomal dominant 198
HP:0000960HP:0000960Sacral dimple0YWHAE CL E G H753112851ORPHA:531Miller-Dieker syndromeHP:0040283 - Occasional14
HP:0000960HP:0000960Sacral dimple0ZIC3 CL E G H754712874OMIM:314390VACTERL association, X-linked39
HP:0000960HP:0000960Sacral dimple0ZNF699 CL E G H37487924750OMIM:619488DEGCAGS SYNDROME; DEGCAGS


Genes (106) :AEBP1 AFF3 ANK1 ARID1B ASXL1 B3GLCT B9D2 BAP1 BAZ1B BCL7B BUD23 CAMK2G CAPN15 CCL2 CD96 CDK10 CLIP2 COLEC10 COX7B CPLX1 CTBP1 CTCF DCHS1 DEAF1 DHCR7 DHPS DNAJC30 DVL1 DVL3 DYRK1A EBP EIF4H ELN EXTL3 FANCB FANCF FAT4 FGFRL1 FKBP6 FUZ FZD2 GNB2 GTF2I GTF2IRD1 GTF2IRD2 H4C5 HCCS HIC1 HNRNPK HOXA13 KANSL1 KCNK9 KIF15 KMT2A LETM1 LIFR LIG4 LIMK1 MAN2C1 MASP1 MED12 METTL27 MLXIPL NADSYN1 NCAPG2 NCF1 NDUFB11 NELFA NSD2 NSUN2 NXN ODC1 OTUD6B PAFAH1B1 PIGG POLA1 PRR12 PSMD12 RAB23 RFC2 RMRP ROR2 RPL10 SCARF2 SETD5 SHANK3 SMG9 SPOP STX1A SUGCT TAF1 TBL2 TBX4 TBXT TCF4 TMCO1 TMEM270 USP9X VANGL1 VANGL2 VPS37D WLS WNT5A YWHAE ZIC3 ZNF699

Diseases (81) :ORPHA:536532 OMIM:619297 ORPHA:251066 OMIM:135900 OMIM:605039 ORPHA:709 OMIM:614175 OMIM:619762 ORPHA:904 OMIM:618522 OMIM:619318 OMIM:182940 ORPHA:1308 OMIM:617694 OMIM:248340 ORPHA:2556 ORPHA:280 OMIM:194190 ORPHA:363611 OMIM:615502 OMIM:601390 OMIM:615828 OMIM:270400 OMIM:618480 ORPHA:3107 OMIM:180700 OMIM:616331 OMIM:616894 ORPHA:268261 ORPHA:401973 ORPHA:508533 OMIM:314390 OMIM:603467 OMIM:615546 OMIM:619503 OMIM:619950 ORPHA:531 OMIM:616580 ORPHA:2438 ORPHA:363958 OMIM:610443 ORPHA:363965 OMIM:612292 ORPHA:166108 ORPHA:261323 OMIM:605130 ORPHA:319182 ORPHA:3206 ORPHA:235 OMIM:619775 OMIM:257920 ORPHA:93932 OMIM:305450 OMIM:618845 OMIM:618460 OMIM:619695 ORPHA:1507 ORPHA:544488 ORPHA:505237 OMIM:617452 OMIM:301030 OMIM:619539 OMIM:617516 OMIM:201000 ORPHA:175 ORPHA:459070 OMIM:600920 OMIM:615761 ORPHA:48652 OMIM:606232 OMIM:619995 OMIM:618828 ORPHA:35706 OMIM:300966 ORPHA:261279 OMIM:610954 OMIM:213980 OMIM:300968 ORPHA:480880 OMIM:619648 OMIM:619488
 

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.