Human Phenotype Ontology 
Grandparent Node:
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Abnormality of bone mineral density (HP:0004348)help
Parent Node:
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Reduced bone mineral density (HP:0004349)help
..Starting node
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Osteopenia (HP:0000938)help
Term ID: 938
Name: Osteopenia
Synonym: Generalised osteopenia; Generalized osteopenia; Osteopaenia
Definition: Osteopenia is a term to define bone density that is not normal but also not as low as osteoporosis. By definition from the World Health Organization osteopenia is defined by bone densitometry as a T score -1 to -2.5.
Comments:
Reference: HP:0000938
Genes and Diseases:
 
       Child Nodes:

 Sister Nodes: 
..expandGeneralized bone demineralization (HP:0006462) help
..expandOsteomalacia (HP:0002749) help
..expandOsteoporosis (HP:0000939) help
..expandPatchy reduction of bone mineral density (HP:0010657) help
..expandPatchy variation in bone mineral density (HP:0010659) help
..expandRickets (HP:0002748) help
InputHPO IDHPO termDistanceGeneGene id entrezHGNC IDDiseaseIdDiseaseNameFrequencyOnsetHGMD variantsClinVar variants
 
HPO disease - gene - phenotype typical associations:
 
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0000938HP:0000938Osteopenia0ADAMTS2 CL E G H9509218ORPHA:1901Dermatosparaxis Ehlers-Danlos syndromeHP:0040281 - Very frequent165
HP:0000938HP:0000938Osteopenia0ADAMTS2 CL E G H9509218OMIM:225410Ehlers-Danlos syndrome, type VII, autosomal recessive.165
HP:0000938HP:0000938Osteopenia0ADAMTSL2 CL E G H971914631ORPHA:1901Dermatosparaxis Ehlers-Danlos syndromeHP:0040281 - Very frequent72
HP:0000938HP:0000938Osteopenia0ADAMTSL2 CL E G H971914631OMIM:231050Geleophysic dysplasia 1.72
HP:0000938HP:0000938Osteopenia0ADCY10 CL E G H5581121285ORPHA:2197Idiopathic hypercalciuriaHP:0040282 - Frequent5
HP:0000938HP:0000938Osteopenia0AEBP1 CL E G H165303ORPHA:536532Classical-like Ehlers-Danlos syndrome type 2HP:0040281 - Very frequent
HP:0000938HP:0000938Osteopenia0AEBP1 CL E G H165303OMIM:618000Ehlers-Danlos syndrome, classic-like, 2
HP:0000938HP:0000938Osteopenia0AFF3 CL E G H38996473OMIM:619297KINSSHIP SYNDROME; KINS1
HP:0000938HP:0000938Osteopenia0AIP CL E G H9049358ORPHA:2965ProlactinomaHP:0040282 - Frequent95
HP:0000938HP:0000938Osteopenia0ALDH18A1 CL E G H58329722ORPHA:90348Autosomal dominant cutis laxa89
HP:0000938HP:0000938Osteopenia0ALDH18A1 CL E G H58329722OMIM:616603Cutis laxa, autosomal dominant 3HP:0040283 - Occasional89
HP:0000938HP:0000938Osteopenia0ALG3 CL E G H1019523056ORPHA:79321ALG3-CDGHP:0040282 - Frequent37
HP:0000938HP:0000938Osteopenia0ANAPC1 CL E G H6468219988ORPHA:221008Rothmund-Thomson syndrome type 1HP:0040284 - Very rare2
HP:0000938HP:0000938Osteopenia0ANO5 CL E G H20385927337OMIM:166260Gnathodiaphyseal dysplasia.304
HP:0000938HP:0000938Osteopenia0ANO5 CL E G H20385927337ORPHA:53697Gnathodiaphyseal dysplasiaHP:0040282 - Frequent304
HP:0000938HP:0000938Osteopenia0ANTXR2 CL E G H11842921732OMIM:228600Hyaline fibromatosis syndrome.49
HP:0000938HP:0000938Osteopenia0ANTXR2 CL E G H11842921732ORPHA:2176Infantile systemic hyalinosisHP:0040281 - Very frequent49
HP:0000938HP:0000938Osteopenia0ATP6V0A2 CL E G H2354518481ORPHA:2834Wrinkly skin syndromeHP:0040281 - Very frequent140
HP:0000938HP:0000938Osteopenia0ATP6V0A2 CL E G H2354518481OMIM:278250Wrinkly skin syndrome.140
HP:0000938HP:0000938Osteopenia0ATP7A CL E G H538869ORPHA:198Occipital horn syndromeHP:0040282 - Frequent192
HP:0000938HP:0000938Osteopenia0ATP8B1 CL E G H52053706OMIM:211600Cholestasis, progressive familial intrahepatic 1144
HP:0000938HP:0000938Osteopenia0AVP CL E G H551894OMIM:125700Diabetes insipidus, Neurohypophyseal type.22
HP:0000938HP:0000938Osteopenia0B3GALT6 CL E G H12679217978OMIM:609465AL-GAZALI SYNDROME38
HP:0000938HP:0000938Osteopenia0B3GALT6 CL E G H12679217978ORPHA:536467B3GALT6-related spondylodysplastic Ehlers-Danlos syndromeHP:0040281 - Very frequent38
HP:0000938HP:0000938Osteopenia0B3GAT3 CL E G H26229923OMIM:245600Multiple joint dislocations, short stature, craniofacial dysmorphism, with or without congenital heart defects5
HP:0000938HP:0000938Osteopenia0B4GALT7 CL E G H11285930ORPHA:75496B4GALT7-related spondylodysplastic Ehlers-Danlos syndromeHP:0040282 - Frequent29
HP:0000938HP:0000938Osteopenia0B4GALT7 CL E G H11285930OMIM:130070Ehlers-Danlos syndrome, spondylodysplastic type, 129
HP:0000938HP:0000938Osteopenia0BAZ1B CL E G H9031961ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0BCL7B CL E G H92751005ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0BMP15 CL E G H92101068ORPHA:24346,XX gonadal dysgenesisHP:0040282 - Frequent16
HP:0000938HP:0000938Osteopenia0BNC1 CL E G H6461081ORPHA:24346,XX gonadal dysgenesisHP:0040282 - Frequent
HP:0000938HP:0000938Osteopenia0BRAF CL E G H6731097OMIM:115150Cardiofaciocutaneous syndrome 1.276
HP:0000938HP:0000938Osteopenia0BUD23 CL E G H11404916405ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0CARS1 CL E G H8331493ORPHA:33364TrichothiodystrophyHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0CAVIN1 CL E G H2841199688OMIM:613327Lipodystrophy, congenital generalized, type 4.48
HP:0000938HP:0000938Osteopenia0CCND1 CL E G H5951582ORPHA:29073Multiple myelomaHP:0040281 - Very frequent1
HP:0000938HP:0000938Osteopenia0CDC73 CL E G H7957716783ORPHA:99879Familial isolated hyperparathyroidismHP:0040281 - Very frequent169
HP:0000938HP:0000938Osteopenia0CDH23 CL E G H6407213733ORPHA:2965ProlactinomaHP:0040282 - Frequent636
HP:0000938HP:0000938Osteopenia0CDH23 CL E G H6407213733ORPHA:91347TSH-secreting pituitary adenomaHP:0040282 - Frequent636
HP:0000938HP:0000938Osteopenia0CDKN1C CL E G H10281786OMIM:614732Intrauterine growth retardation, metaphyseal dysplasia, adrenal hypoplasiacongenita, and genital anomalies114
HP:0000938HP:0000938Osteopenia0CEACAM3 CL E G H10841815ORPHA:586Cystic fibrosis
HP:0000938HP:0000938Osteopenia0CEACAM6 CL E G H46801818ORPHA:586Cystic fibrosis1
HP:0000938HP:0000938Osteopenia0CFTR CL E G H10801884ORPHA:586Cystic fibrosis1371
HP:0000938HP:0000938Osteopenia0CHD7 CL E G H5563620626ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent515
HP:0000938HP:0000938Osteopenia0CHST3 CL E G H94691971OMIM:245600Multiple joint dislocations, short stature, craniofacial dysmorphism, with or without congenital heart defects165
HP:0000938HP:0000938Osteopenia0CLCA4 CL E G H228022018ORPHA:586Cystic fibrosis
HP:0000938HP:0000938Osteopenia0CLIP2 CL E G H74612586ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0CLPB CL E G H8157030664ORPHA:486Autosomal dominant severe congenital neutropeniaHP:0040283 - Occasional38
HP:0000938HP:0000938Osteopenia0COG1 CL E G H93826545ORPHA:263508COG1-CDGHP:0040282 - Frequent52
HP:0000938HP:0000938Osteopenia0COG1 CL E G H93826545OMIM:611209Congenital disorder of glycosylation, type IIg.52
HP:0000938HP:0000938Osteopenia0COL1A1 CL E G H12772197ORPHA:287Classical Ehlers-Danlos syndromeHP:0040282 - Frequent373
HP:0000938HP:0000938Osteopenia0COL1A1 CL E G H12772197OMIM:130060Ehlers-Danlos syndrome, arthrochalasia type, 1.373
HP:0000938HP:0000938Osteopenia0COL1A1 CL E G H12772197OMIM:166200Osteogenesis imperfecta, type I.373
HP:0000938HP:0000938Osteopenia0COL5A1 CL E G H12892209ORPHA:287Classical Ehlers-Danlos syndromeHP:0040282 - Frequent660
HP:0000938HP:0000938Osteopenia0COL5A2 CL E G H12902210ORPHA:287Classical Ehlers-Danlos syndromeHP:0040282 - Frequent325
HP:0000938HP:0000938Osteopenia0COL7A1 CL E G H12942214ORPHA:79408Autosomal recessive generalized dystrophic epidermolysis bullosa, severe formHP:0040283 - Occasional263
HP:0000938HP:0000938Osteopenia0COPB2 CL E G H92762232OMIM:619884
HP:0000938HP:0000938Osteopenia0COX4I2 CL E G H8470116232OMIM:612714Exocrine pancreatic insufficiency, dyserythropoietic anemia, and calvarialhyperostosis.13
HP:0000938HP:0000938Osteopenia0CREB3L1 CL E G H9099318856OMIM:616229Osteogenesis imperfecta, type XVI.4
HP:0000938HP:0000938Osteopenia0CRIPT CL E G H941914312OMIM:615789Short stature with microcephaly and distinctive facies4
HP:0000938HP:0000938Osteopenia0CRTAP CL E G H104912379OMIM:610682Osteogenesis imperfecta, type VII.124
HP:0000938HP:0000938Osteopenia0CTC1 CL E G H8016926169OMIM:612199Cerebroretinal microangiopathy with calcifications and cysts.160
HP:0000938HP:0000938Osteopenia0CTCF CL E G H1066413723ORPHA:363611CTCF-related neurodevelopmental disorderHP:0040283 - Occasional20
HP:0000938HP:0000938Osteopenia0CYP19A1 CL E G H15882594ORPHA:91Aromatase deficiencyHP:0040281 - Very frequent60
HP:0000938HP:0000938Osteopenia0CYP27A1 CL E G H15932605ORPHA:909Cerebrotendinous xanthomatosisHP:0040283 - Occasional114
HP:0000938HP:0000938Osteopenia0CYP3A4 CL E G H15762637OMIM:619073VITAMIN D-DEPENDENT RICKETS, TYPE 3; VDDR32
HP:0000938HP:0000938Osteopenia0DCAF17 CL E G H8006725784ORPHA:3464Woodhouse-Sakati syndromeHP:0040281 - Very frequent87
HP:0000938HP:0000938Osteopenia0DCHS1 CL E G H864213681ORPHA:314679Cerebrofacioarticular syndromeHP:0040282 - Frequent27
HP:0000938HP:0000938Osteopenia0DCHS1 CL E G H864213681OMIM:601390Van maldergem syndrome 1.27
HP:0000938HP:0000938Osteopenia0DCTN4 CL E G H5116415518ORPHA:586Cystic fibrosis
HP:0000938HP:0000938Osteopenia0DDOST CL E G H16502728OMIM:614507Congenital disorder of glycosylation, type IR62
HP:0000938HP:0000938Osteopenia0DDOST CL E G H16502728ORPHA:300536DDOST-CDGHP:0040281 - Very frequent62
HP:0000938HP:0000938Osteopenia0DNAJC21 CL E G H13421827030ORPHA:811Shwachman-Diamond syndromeHP:0040283 - Occasional5
HP:0000938HP:0000938Osteopenia0DNAJC30 CL E G H8427716410ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0DPM2 CL E G H88183006ORPHA:329178Congenital muscular dystrophy with intellectual disability and severe epilepsyHP:0040282 - Frequent26
HP:0000938HP:0000938Osteopenia0DUSP6 CL E G H18483072OMIM:615269Hypogonadotropic hypogonadism 19 with or without anosmiaHP:0040283 - Occasional4
HP:0000938HP:0000938Osteopenia0DUSP6 CL E G H18483072ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent4
HP:0000938HP:0000938Osteopenia0EDNRA CL E G H19093179ORPHA:586Cystic fibrosis3
HP:0000938HP:0000938Osteopenia0EED CL E G H87263188OMIM:617561Cohen-Gibson syndrome.4
HP:0000938HP:0000938Osteopenia0EFL1 CL E G H7963125789ORPHA:811Shwachman-Diamond syndromeHP:0040283 - Occasional1
HP:0000938HP:0000938Osteopenia0EIF4H CL E G H745812741ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0ELANE CL E G H19913309ORPHA:486Autosomal dominant severe congenital neutropeniaHP:0040283 - Occasional79
HP:0000938HP:0000938Osteopenia0ELN CL E G H20063327ORPHA:90348Autosomal dominant cutis laxa172
HP:0000938HP:0000938Osteopenia0ELN CL E G H20063327ORPHA:904Williams syndromeHP:0040283 - Occasional172
HP:0000938HP:0000938Osteopenia0ELN CL E G H20063327OMIM:194050Williams-Beuren syndrome172
HP:0000938HP:0000938Osteopenia0ERCC2 CL E G H20683434ORPHA:33364TrichothiodystrophyHP:0040283 - Occasional106
HP:0000938HP:0000938Osteopenia0ERCC3 CL E G H20713435ORPHA:33364TrichothiodystrophyHP:0040283 - Occasional54
HP:0000938HP:0000938Osteopenia0ESR1 CL E G H20993467OMIM:615363Estrogen resistance.13
HP:0000938HP:0000938Osteopenia0ESR1 CL E G H20993467ORPHA:785Estrogen resistance syndromeHP:0040281 - Very frequent13
HP:0000938HP:0000938Osteopenia0FARSB CL E G H1005617800OMIM:613658Rajab interstitial lung disease with brain calcifications
HP:0000938HP:0000938Osteopenia0FAT4 CL E G H7963323109ORPHA:314679Cerebrofacioarticular syndromeHP:0040282 - Frequent114
HP:0000938HP:0000938Osteopenia0FAT4 CL E G H7963323109OMIM:615546Van maldergem syndrome 2.114
HP:0000938HP:0000938Osteopenia0FBLN5 CL E G H105163602ORPHA:90348Autosomal dominant cutis laxa63
HP:0000938HP:0000938Osteopenia0FBN1 CL E G H22003603ORPHA:2462Shprintzen-Goldberg syndromeHP:0040283 - Occasional1361
HP:0000938HP:0000938Osteopenia0FBN2 CL E G H22013604OMIM:121050Contractural arachnodactyly, congenital.655
HP:0000938HP:0000938Osteopenia0FGF17 CL E G H88223673OMIM:615270Hypogonadotropic hypogonadism 20 with or without anosmiaHP:0040283 - Occasional3
HP:0000938HP:0000938Osteopenia0FGF17 CL E G H88223673ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent3
HP:0000938HP:0000938Osteopenia0FGF8 CL E G H22533686ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent17
HP:0000938HP:0000938Osteopenia0FGFR1 CL E G H22603688OMIM:147950Hypogonadotropic hypogonadism 2 with or without anosmiaHP:0040283 - Occasional172
HP:0000938HP:0000938Osteopenia0FGFR1 CL E G H22603688ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent172
HP:0000938HP:0000938Osteopenia0FGFR2 CL E G H22633689ORPHA:313855FGFR2-related bent bone dysplasiaHP:0040281 - Very frequent175
HP:0000938HP:0000938Osteopenia0FKBP10 CL E G H6068118169OMIM:610968Osteogenesis imperfecta, type XI.61
HP:0000938HP:0000938Osteopenia0FKBP14 CL E G H5503318625OMIM:614557Ehlers-Danlos syndrome, kyphoscoliotic type, 2.13
HP:0000938HP:0000938Osteopenia0FKBP14 CL E G H5503318625ORPHA:300179Kyphoscoliotic Ehlers-Danlos syndrome due to FKBP22 deficiencyHP:0040282 - Frequent13
HP:0000938HP:0000938Osteopenia0FKBP6 CL E G H84683722ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0FLRT3 CL E G H237673762OMIM:615271Hypogonadotropic hypogonadism 21 with or without anosmiaHP:0040283 - Occasional4
HP:0000938HP:0000938Osteopenia0FOXA2 CL E G H31705022ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040282 - Frequent
HP:0000938HP:0000938Osteopenia0FSHR CL E G H24923969ORPHA:24346,XX gonadal dysgenesisHP:0040282 - Frequent50
HP:0000938HP:0000938Osteopenia0FUT8 CL E G H25304019OMIM:618005Congenital disorder of glycosylation with defective fucosylation 1.3
HP:0000938HP:0000938Osteopenia0GATA1 CL E G H26234170ORPHA:79277Congenital erythropoietic porphyriaHP:0040283 - Occasional29
HP:0000938HP:0000938Osteopenia0GBA1 CL E G H26294177ORPHA:77259Gaucher disease type 1HP:0040281 - Very frequent
HP:0000938HP:0000938Osteopenia0GCLC CL E G H27294311ORPHA:586Cystic fibrosis2
HP:0000938HP:0000938Osteopenia0GCM2 CL E G H92474198ORPHA:99879Familial isolated hyperparathyroidismHP:0040281 - Very frequent51
HP:0000938HP:0000938Osteopenia0GCM2 CL E G H92474198OMIM:617343Hyperparathyroidism 4HP:0040283 - Occasional51
HP:0000938HP:0000938Osteopenia0GEMIN4 CL E G H5062815717OMIM:617913Neurodevelopmental disorder with microcephaly, cataracts, and renal abnormalities.1
HP:0000938HP:0000938Osteopenia0GFI1 CL E G H26724237ORPHA:486Autosomal dominant severe congenital neutropeniaHP:0040283 - Occasional56
HP:0000938HP:0000938Osteopenia0GLI2 CL E G H27364318ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040282 - Frequent173
HP:0000938HP:0000938Osteopenia0GLIS3 CL E G H16979228510OMIM:610199Diabetes mellitus, neonatal, with congenital hypothyroidismHP:0040283 - Occasional143
HP:0000938HP:0000938Osteopenia0GNAS CL E G H27784392OMIM:219080ACTH-independent macronodular adrenal hyperplasia.101
HP:0000938HP:0000938Osteopenia0GNPAT CL E G H84434416OMIM:222765Rhizomelic chondrodysplasia punctata, type 2.58
HP:0000938HP:0000938Osteopenia0GNPTAB CL E G H7915829670OMIM:252500Mucolipidosis II alpha/beta.240
HP:0000938HP:0000938Osteopenia0GNRH1 CL E G H27964419ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent15
HP:0000938HP:0000938Osteopenia0GNRHR CL E G H27984421ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent92
HP:0000938HP:0000938Osteopenia0GORAB CL E G H9234425676OMIM:231070Geroderma osteodysplasticum.52
HP:0000938HP:0000938Osteopenia0GPAA1 CL E G H87334446OMIM:617810GLYCOSYLPHOSPHATIDYLINOSITOL BIOSYNTHESIS DEFECT 15; GPIBD15
HP:0000938HP:0000938Osteopenia0GPAA1 CL E G H87334446ORPHA:529665Neurodevelopmental delay-seizures-ophthalmic anomalies-osteopenia-cerebellar atrophy syndromeHP:0040282 - Frequent
HP:0000938HP:0000938Osteopenia0GPR35 CL E G H28594492ORPHA:171Primary sclerosing cholangitisHP:0040283 - Occasional2
HP:0000938HP:0000938Osteopenia0GSTM3 CL E G H29474635ORPHA:586Cystic fibrosis1
HP:0000938HP:0000938Osteopenia0GTF2E2 CL E G H29614651ORPHA:33364TrichothiodystrophyHP:0040283 - Occasional2
HP:0000938HP:0000938Osteopenia0GTF2H5 CL E G H40467221157ORPHA:33364TrichothiodystrophyHP:0040283 - Occasional3
HP:0000938HP:0000938Osteopenia0GTF2I CL E G H29694659ORPHA:904Williams syndromeHP:0040283 - Occasional1
HP:0000938HP:0000938Osteopenia0GTF2IRD1 CL E G H95694661ORPHA:904Williams syndromeHP:0040283 - Occasional1
HP:0000938HP:0000938Osteopenia0GTF2IRD2 CL E G H8416330775ORPHA:904Williams syndromeHP:0040283 - Occasional1
HP:0000938HP:0000938Osteopenia0GZF1 CL E G H6441215808OMIM:617662Joint laxity, short stature, and myopia.
HP:0000938HP:0000938Osteopenia0HBB CL E G H30434827ORPHA:231222Beta-thalassemia intermediaHP:0040283 - Occasional580
HP:0000938HP:0000938Osteopenia0HECW2 CL E G H5752029853OMIM:617268Neurodevelopmental disorder with hypotonia, seizures, and absent language11
HP:0000938HP:0000938Osteopenia0HERC2 CL E G H89244868OMIM:176270Prader-Willi syndrome38
HP:0000938HP:0000938Osteopenia0HESX1 CL E G H88204877ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040282 - Frequent21
HP:0000938HP:0000938Osteopenia0HFE CL E G H30774886ORPHA:586Cystic fibrosis38
HP:0000938HP:0000938Osteopenia0HMOX1 CL E G H31625013ORPHA:586Cystic fibrosis3
HP:0000938HP:0000938Osteopenia0HNRNPH1 CL E G H31875041OMIM:620083
HP:0000938HP:0000938Osteopenia0HNRNPK CL E G H31905044ORPHA:352665Neurodevelopmental disorder-craniofacial dysmorphism-cardiac defect-skeletal anomalies syndrome due to 9q21.3 microdeletionHP:0040283 - Occasional8
HP:0000938HP:0000938Osteopenia0HNRNPK CL E G H31905044ORPHA:453504Neurodevelopmental disorder-craniofacial dysmorphism-cardiac defect-skeletal anomalies syndrome due to a point mutationHP:0040283 - Occasional8
HP:0000938HP:0000938Osteopenia0HPGD CL E G H32485154OMIM:259100Hypertrophic osteoarthropathy, primary, autosomal recessive 1.55
HP:0000938HP:0000938Osteopenia0HRAS CL E G H32655173OMIM:163200Schimmelpenning-Feuerstein-Mims syndrome.113
HP:0000938HP:0000938Osteopenia0HS6ST1 CL E G H93945201OMIM:614880Hypogonadotropic hypogonadism 15 with or without anosmia8
HP:0000938HP:0000938Osteopenia0HS6ST1 CL E G H93945201ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent8
HP:0000938HP:0000938Osteopenia0HSD17B4 CL E G H32955213OMIM:261515D-bifunctional protein deficiency.98
HP:0000938HP:0000938Osteopenia0IARS2 CL E G H5569929685OMIM:616007Cataracts, growth hormone deficiency, sensory neuropathy, sensorineural hearing loss, and skeletal dysplasia.25
HP:0000938HP:0000938Osteopenia0IER3IP1 CL E G H5112418550OMIM:614231Microcephaly, epilepsy, and diabetes syndromeHP:0040283 - Occasional6
HP:0000938HP:0000938Osteopenia0IFIH1 CL E G H6413518873OMIM:182250Singleton-Merten syndrome 128
HP:0000938HP:0000938Osteopenia0IFITM5 CL E G H38773316644OMIM:610967Osteogenesis imperfecta, type V.8
HP:0000938HP:0000938Osteopenia0IFT140 CL E G H974229077OMIM:266920Short-rib thoracic dysplasia 9 with or without polydactyly148
HP:0000938HP:0000938Osteopenia0IGF1 CL E G H34795464OMIM:608747Insulin-Like growth factor I deficiency.91
HP:0000938HP:0000938Osteopenia0IL17RD CL E G H5475617616OMIM:615267Hypogonadotropic hypogonadism 18 with or without anosmiaHP:0040283 - Occasional9
HP:0000938HP:0000938Osteopenia0IL1RN CL E G H35576000OMIM:612852Interleukin 1 receptor antagonist deficiency40
HP:0000938HP:0000938Osteopenia0IPW CL E G H36536109OMIM:176270Prader-Willi syndrome
HP:0000938HP:0000938Osteopenia0IRX5 CL E G H1026514361OMIM:611174Hamamy syndrome.4
HP:0000938HP:0000938Osteopenia0KCNJ1 CL E G H37586255OMIM:241200Bartter syndrome, antenatal, type 2.51
HP:0000938HP:0000938Osteopenia0KCNN4 CL E G H37836293ORPHA:586Cystic fibrosis3
HP:0000938HP:0000938Osteopenia0KISS1 CL E G H38146341ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent3
HP:0000938HP:0000938Osteopenia0KISS1R CL E G H846344510OMIM:614837Hypogonadotropic hypogonadism 8 with or without anosmia.14
HP:0000938HP:0000938Osteopenia0KISS1R CL E G H846344510ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent14
HP:0000938HP:0000938Osteopenia0KL CL E G H93656344OMIM:617994TUMORAL CALCINOSIS, HYPERPHOSPHATEMIC, FAMILIAL, 3; HFTC368
HP:0000938HP:0000938Osteopenia0KNSTRN CL E G H9041730767ORPHA:221139Combined immunodeficiency with faciooculoskeletal anomaliesHP:0040282 - Frequent1
HP:0000938HP:0000938Osteopenia0KNSTRN CL E G H9041730767OMIM:613328Roifman-Chitayat syndrome.1
HP:0000938HP:0000938Osteopenia0KRAS CL E G H38456407OMIM:163200Schimmelpenning-Feuerstein-Mims syndrome.196
HP:0000938HP:0000938Osteopenia0LAMA5 CL E G H39116485OMIM:6200765
HP:0000938HP:0000938Osteopenia0LHX4 CL E G H8988421734ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040282 - Frequent43
HP:0000938HP:0000938Osteopenia0LIFR CL E G H39776597ORPHA:3206Stüve-Wiedemann syndromeHP:0040282 - Frequent144
HP:0000938HP:0000938Osteopenia0LIMK1 CL E G H39846613ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0LMNA CL E G H40006636OMIM:212112Malouf syndrome.645
HP:0000938HP:0000938Osteopenia0LMNA CL E G H40006636OMIM:248370Mandibuloacral dysplasia645
HP:0000938HP:0000938Osteopenia0LMNA CL E G H40006636ORPHA:1662Restrictive dermopathyHP:0040281 - Very frequent645
HP:0000938HP:0000938Osteopenia0LRP5 CL E G H40416697OMIM:601813Exudative vitreoretinopathy 4.125
HP:0000938HP:0000938Osteopenia0LRP5 CL E G H40416697ORPHA:2788Osteoporosis-pseudoglioma syndromeHP:0040282 - Frequent125
HP:0000938HP:0000938Osteopenia0MAFB CL E G H99356408OMIM:166300Multicentric carpotarsal osteolysis syndrome.63
HP:0000938HP:0000938Osteopenia0MAGEL2 CL E G H545516814ORPHA:398069MAGEL2-related Prader-Willi-like syndromeHP:0040283 - Occasional63
HP:0000938HP:0000938Osteopenia0MAGEL2 CL E G H545516814OMIM:176270Prader-Willi syndrome63
HP:0000938HP:0000938Osteopenia0MAGEL2 CL E G H545516814ORPHA:98754Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15HP:0040283 - Occasional63
HP:0000938HP:0000938Osteopenia0MAGEL2 CL E G H545516814ORPHA:177901Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1HP:0040283 - Occasional63
HP:0000938HP:0000938Osteopenia0MAGEL2 CL E G H545516814ORPHA:177904Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2HP:0040283 - Occasional63
HP:0000938HP:0000938Osteopenia0MAN2B1 CL E G H41256826ORPHA:309288Alpha-mannosidosis, adult formHP:0040283 - Occasional136
HP:0000938HP:0000938Osteopenia0MAN2B1 CL E G H41256826ORPHA:309282Alpha-mannosidosis, infantile formHP:0040283 - Occasional136
HP:0000938HP:0000938Osteopenia0MBTPS2 CL E G H5136015455OMIM:301014Osteogenesis imperfecta, type XIX.22
HP:0000938HP:0000938Osteopenia0MDM4 CL E G H41946974OMIM:618849BONE MARROW FAILURE SYNDROME 6; BMFS61
HP:0000938HP:0000938Osteopenia0MEN1 CL E G H42217010ORPHA:99879Familial isolated hyperparathyroidismHP:0040281 - Very frequent462
HP:0000938HP:0000938Osteopenia0MEN1 CL E G H42217010ORPHA:2965ProlactinomaHP:0040282 - Frequent462
HP:0000938HP:0000938Osteopenia0METTL27 CL E G H15536819068ORPHA:904Williams syndromeHP:0040283 - Occasional1
HP:0000938HP:0000938Osteopenia0MGAT2 CL E G H42477045OMIM:212066Congenital disorder of glycosylation, type IIa.39
HP:0000938HP:0000938Osteopenia0MGAT2 CL E G H42477045ORPHA:79329MGAT2-CDGHP:0040283 - Occasional39
HP:0000938HP:0000938Osteopenia0MIA3 CL E G H37505624008OMIM:619269ODONTOCHONDRODYSPLASIA 2 WITH HEARING LOSS AND DIABETES; ODCD2
HP:0000938HP:0000938Osteopenia0MIF CL E G H42827097ORPHA:586Cystic fibrosis1
HP:0000938HP:0000938Osteopenia0MKRN3 CL E G H76817114OMIM:176270Prader-Willi syndrome5
HP:0000938HP:0000938Osteopenia0MKRN3-AS1 CL E G H10108OMIM:176270Prader-Willi syndrome
HP:0000938HP:0000938Osteopenia0MLXIPL CL E G H5108512744ORPHA:904Williams syndromeHP:0040283 - Occasional1
HP:0000938HP:0000938Osteopenia0MLXIPL CL E G H5108512744OMIM:194050Williams-Beuren syndrome1
HP:0000938HP:0000938Osteopenia0MMP1 CL E G H43127155ORPHA:79408Autosomal recessive generalized dystrophic epidermolysis bullosa, severe formHP:0040283 - Occasional6
HP:0000938HP:0000938Osteopenia0MMP14 CL E G H43237160ORPHA:371428Multicentric osteolysis-nodulosis-arthropathy spectrumHP:0040281 - Very frequent2
HP:0000938HP:0000938Osteopenia0MMP2 CL E G H43137166OMIM:259600Multicentric osteolysis, nodulosis, and arthropathy.64
HP:0000938HP:0000938Osteopenia0MMP2 CL E G H43137166ORPHA:371428Multicentric osteolysis-nodulosis-arthropathy spectrumHP:0040281 - Very frequent64
HP:0000938HP:0000938Osteopenia0MPLKIP CL E G H13664716002ORPHA:33364TrichothiodystrophyHP:0040283 - Occasional9
HP:0000938HP:0000938Osteopenia0MRPS22 CL E G H5694514508ORPHA:24346,XX gonadal dysgenesisHP:0040282 - Frequent25
HP:0000938HP:0000938Osteopenia0MST1 CL E G H44857380ORPHA:171Primary sclerosing cholangitisHP:0040283 - Occasional1
HP:0000938HP:0000938Osteopenia0MTAP CL E G H45077413OMIM:112250Diaphyseal medullary stenosis with malignant fibrous histiocytoma.85
HP:0000938HP:0000938Osteopenia0MTTP CL E G H45477467ORPHA:14AbetalipoproteinemiaHP:0040283 - Occasional81
HP:0000938HP:0000938Osteopenia0MTX2 CL E G H106517506OMIM:619127MANDIBULOACRAL DYSPLASIA PROGEROID SYNDROME; MDPS
HP:0000938HP:0000938Osteopenia0NAA20 CL E G H5112615908OMIM:619717INTELLECTUAL DEVELOPMENTAL DISORDER, AUTOSOMAL RECESSIVE 73; MRT73
HP:0000938HP:0000938Osteopenia0NAGA CL E G H46687631OMIM:609241Schindler disease, type I.47
HP:0000938HP:0000938Osteopenia0NCF1 CL E G H6533617660ORPHA:904Williams syndromeHP:0040283 - Occasional13
HP:0000938HP:0000938Osteopenia0NDN CL E G H46927675ORPHA:98754Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15HP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0NDN CL E G H46927675ORPHA:177901Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1HP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0NDN CL E G H46927675ORPHA:177904Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2HP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0NF1 CL E G H47637765ORPHA:9768517q11 microdeletion syndromeHP:0040283 - Occasional1952
HP:0000938HP:0000938Osteopenia0NHERF1 CL E G H936811075OMIM:612287Nephrolithiasis/osteoporosis, hypophosphatemic, 2.
HP:0000938HP:0000938Osteopenia0NOTCH2 CL E G H48537882ORPHA:955Hajdu-Cheney syndromeHP:0040281 - Very frequent138
HP:0000938HP:0000938Osteopenia0NOTCH2 CL E G H48537882OMIM:102500Hajdu-Cheney syndrome.138
HP:0000938HP:0000938Osteopenia0NPAP1 CL E G H237421190OMIM:176270Prader-Willi syndrome1
HP:0000938HP:0000938Osteopenia0NPR2 CL E G H48827944OMIM:615923Epiphyseal chondrodysplasia, Miura type.53
HP:0000938HP:0000938Osteopenia0NR5A1 CL E G H25167983ORPHA:24346,XX gonadal dysgenesisHP:0040282 - Frequent38
HP:0000938HP:0000938Osteopenia0NRAS CL E G H48937989OMIM:163200Schimmelpenning-Feuerstein-Mims syndrome.102
HP:0000938HP:0000938Osteopenia0NSMF CL E G H2601229843ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent6
HP:0000938HP:0000938Osteopenia0NUP107 CL E G H5712229914ORPHA:24346,XX gonadal dysgenesisHP:0040282 - Frequent5
HP:0000938HP:0000938Osteopenia0OCA2 CL E G H49488101ORPHA:98754Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15HP:0040283 - Occasional121
HP:0000938HP:0000938Osteopenia0OCA2 CL E G H49488101ORPHA:177901Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1HP:0040283 - Occasional121
HP:0000938HP:0000938Osteopenia0OCA2 CL E G H49488101ORPHA:177904Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2HP:0040283 - Occasional121
HP:0000938HP:0000938Osteopenia0OTX2 CL E G H50158522ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040282 - Frequent41
HP:0000938HP:0000938Osteopenia0P3H1 CL E G H6417519316OMIM:610915Osteogenesis imperfecta, type VIII.43
HP:0000938HP:0000938Osteopenia0P4HB CL E G H50348548OMIM:112240Cole-Carpenter syndrome 1.2
HP:0000938HP:0000938Osteopenia0PAPPA2 CL E G H6067614615OMIM:619489SHORT STATURE, DAUBER-ARGENTE TYPE; SSDA2
HP:0000938HP:0000938Osteopenia0PDE11A CL E G H509408773OMIM:610475Pigmented nodular adrenocortical disease, primary, 2.13
HP:0000938HP:0000938Osteopenia0PDGFRB CL E G H51598804OMIM:601812Premature aging syndrome, Penttinen type.28
HP:0000938HP:0000938Osteopenia0PIGT CL E G H5160414938ORPHA:369837Intellectual disability-seizures-hypophosphatasia-ophthalmic-skeletal anomalies syndromeHP:0040281 - Very frequent12
HP:0000938HP:0000938Osteopenia0PIGT CL E G H5160414938OMIM:615398Multiple congenital anomalies-hypotonia-seizures syndrome 3.12
HP:0000938HP:0000938Osteopenia0PIGU CL E G H12886915791OMIM:618590NEURODEVELOPMENTAL DISORDER WITH BRAIN ANOMALIES, SEIZURES, AND SCOLIOSIS; NEDBSS
HP:0000938HP:0000938Osteopenia0PIGY CL E G H8499228213OMIM:616809Hyperphosphatasia with mental retardation syndrome 6.2
HP:0000938HP:0000938Osteopenia0PIK3CD CL E G H52938977ORPHA:221139Combined immunodeficiency with faciooculoskeletal anomaliesHP:0040282 - Frequent9
HP:0000938HP:0000938Osteopenia0PIK3CD CL E G H52938977OMIM:613328Roifman-Chitayat syndrome.9
HP:0000938HP:0000938Osteopenia0PLEKHM1 CL E G H984229017OMIM:618107OSTEOPETROSIS, AUTOSOMAL DOMINANT 3; OPTA32
HP:0000938HP:0000938Osteopenia0PLOD1 CL E G H53519081OMIM:225400Ehlers-Danlos syndrome, kyphoscoliotic type, 1105
HP:0000938HP:0000938Osteopenia0PLOD1 CL E G H53519081ORPHA:1900Kyphoscoliotic Ehlers-Danlos syndrome due to lysyl hydroxylase 1 deficiencyHP:0040281 - Very frequent105
HP:0000938HP:0000938Osteopenia0PLOD2 CL E G H53529082OMIM:609220Bruck syndrome 2.45
HP:0000938HP:0000938Osteopenia0PLOD3 CL E G H89859083OMIM:612394Bone fragility with contractures, arterial rupture, and deafness.5
HP:0000938HP:0000938Osteopenia0PMM2 CL E G H53739115OMIM:212065Congenital disorder of glycosylation, type Ia.150
HP:0000938HP:0000938Osteopenia0PMM2 CL E G H53739115ORPHA:79318PMM2-CDGHP:0040282 - Frequent150
HP:0000938HP:0000938Osteopenia0POC1A CL E G H2588624488OMIM:614813Short stature, onychodysplasia, facial dysmorphism, and hypotrichosis10
HP:0000938HP:0000938Osteopenia0POLE CL E G H54269177OMIM:618336Intrauterine growth retardation, metaphyseal dysplasia, adrenal hypoplasia congenita, genital anomalies, and immunodeficiencyHP:0040284 - Very rare1129
HP:0000938HP:0000938Osteopenia0POLR3A CL E G H1112830074ORPHA:3455Wiedemann-Rautenstrauch syndromeHP:0040282 - Frequent138
HP:0000938HP:0000938Osteopenia0POLR3H CL E G H17156830349ORPHA:24346,XX gonadal dysgenesisHP:0040282 - Frequent
HP:0000938HP:0000938Osteopenia0POU1F1 CL E G H54499210ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040282 - Frequent36
HP:0000938HP:0000938Osteopenia0PRKACA CL E G H55669380OMIM:615830Pigmented nodular adrenocortical disease, primary, 4.2
HP:0000938HP:0000938Osteopenia0PRKAR1A CL E G H55739388OMIM:610489Pigmented nodular adrenocortical disease, primary, 1.134
HP:0000938HP:0000938Osteopenia0PRLR CL E G H56189446ORPHA:397685Familial hyperprolactinemiaHP:0040283 - Occasional2
HP:0000938HP:0000938Osteopenia0PROK2 CL E G H6067518455ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent9
HP:0000938HP:0000938Osteopenia0PROKR2 CL E G H12867415836ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent34
HP:0000938HP:0000938Osteopenia0PROP1 CL E G H56269455ORPHA:95494Combined pituitary hormone deficiencies, genetic formsHP:0040282 - Frequent54
HP:0000938HP:0000938Osteopenia0PROP1 CL E G H56269455ORPHA:90695Non-acquired panhypopituitarismHP:0040283 - Occasional54
HP:0000938HP:0000938Osteopenia0PSAP CL E G H56609498OMIM:610539Gaucher disease, atypical81
HP:0000938HP:0000938Osteopenia0PSMC3IP CL E G H2989317928ORPHA:24346,XX gonadal dysgenesisHP:0040282 - Frequent2
HP:0000938HP:0000938Osteopenia0PTH1R CL E G H57459608OMIM:156400Metaphyseal chondrodysplasia, Jansen type.58
HP:0000938HP:0000938Osteopenia0PWAR1 CL E G H14562430089OMIM:176270Prader-Willi syndrome
HP:0000938HP:0000938Osteopenia0PWRN1 CL E G H79111433235OMIM:176270Prader-Willi syndrome
HP:0000938HP:0000938Osteopenia0PYCR1 CL E G H58319721OMIM:612940Cutis laxa, autosomal recessive, type IIB.53
HP:0000938HP:0000938Osteopenia0PYCR1 CL E G H58319721OMIM:614438Cutis laxa, autosomal recessive, type IIIB53
HP:0000938HP:0000938Osteopenia0PYGL CL E G H58369725ORPHA:369Glycogen storage disease due to liver glycogen phosphorylase deficiencyHP:0040282 - Frequent71
HP:0000938HP:0000938Osteopenia0RECQL4 CL E G H94019949ORPHA:221016Rothmund-Thomson syndrome type 2HP:0040283 - Occasional445
HP:0000938HP:0000938Osteopenia0RFC2 CL E G H59829970ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0RNF113A CL E G H773712974ORPHA:33364TrichothiodystrophyHP:0040283 - Occasional3
HP:0000938HP:0000938Osteopenia0RNF125 CL E G H5494121150OMIM:616260Tenorio syndrome.5
HP:0000938HP:0000938Osteopenia0RNU4ATAC CL E G H10015168334016ORPHA:2636Microcephalic osteodysplastic primordial dwarfism types I and IIIHP:0040281 - Very frequent15
HP:0000938HP:0000938Osteopenia0RPL11 CL E G H613510301OMIM:612562Diamond-Blackfan anemia 7.22
HP:0000938HP:0000938Osteopenia0RSPRY1 CL E G H8997029420ORPHA:457395Progressive spondyloepimetaphyseal dysplasia-short stature-short fourth metatarsals-intellectual disability syndromeHP:0040281 - Very frequent2
HP:0000938HP:0000938Osteopenia0RSPRY1 CL E G H8997029420OMIM:616723Spondyloepimetaphyseal dysplasia, Faden-Alkuraya type.2
HP:0000938HP:0000938Osteopenia0SATB2 CL E G H2331421637ORPHA:251028SATB2-associated syndrome due to a chromosomal rearrangementHP:0040283 - Occasional34
HP:0000938HP:0000938Osteopenia0SATB2 CL E G H2331421637ORPHA:576283SATB2-associated syndrome due to a pathogenic variantHP:0040282 - Frequent34
HP:0000938HP:0000938Osteopenia0SBDS CL E G H5111919440ORPHA:811Shwachman-Diamond syndromeHP:0040283 - Occasional26
HP:0000938HP:0000938Osteopenia0SCARB2 CL E G H9501665ORPHA:77259Gaucher disease type 1HP:0040281 - Very frequent77
HP:0000938HP:0000938Osteopenia0SEC23A CL E G H1048410701OMIM:607812Craniolenticulosutural dysplasiaHP:0040283 - Occasional2
HP:0000938HP:0000938Osteopenia0SEC24D CL E G H987110706OMIM:616294Cole-Carpenter syndrome 2.5
HP:0000938HP:0000938Osteopenia0SEMA4D CL E G H1050710732ORPHA:171Primary sclerosing cholangitisHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0SERPINA1 CL E G H52658941ORPHA:586Cystic fibrosis131
HP:0000938HP:0000938Osteopenia0SERPINH1 CL E G H8711546OMIM:613848Osteogenesis imperfecta, type X.52
HP:0000938HP:0000938Osteopenia0SGMS2 CL E G H16692928395OMIM:126550Calvarial doughnut lesions with bone fragility.
HP:0000938HP:0000938Osteopenia0SH3PXD2B CL E G H28559029242OMIM:249420Frank-ter Haar syndrome.134
HP:0000938HP:0000938Osteopenia0SIM1 CL E G H649210882ORPHA:398079SIM1-related Prader-Willi-like syndromeHP:0040283 - Occasional40
HP:0000938HP:0000938Osteopenia0SKI CL E G H649710896OMIM:182212Shprintzen-Goldberg craniosynostosis syndrome.150
HP:0000938HP:0000938Osteopenia0SKI CL E G H649710896ORPHA:2462Shprintzen-Goldberg syndromeHP:0040283 - Occasional150
HP:0000938HP:0000938Osteopenia0SLC10A1 CL E G H655410905OMIM:619256HYPERCHOLANEMIA, FAMILIAL, 2; FHCA2
HP:0000938HP:0000938Osteopenia0SLC11A1 CL E G H655610907ORPHA:586Cystic fibrosis2
HP:0000938HP:0000938Osteopenia0SLC12A1 CL E G H655710910OMIM:601678Bartter syndrome, type 1, antenatal.75
HP:0000938HP:0000938Osteopenia0SLC17A5 CL E G H2650310933OMIM:269920Infantile sialic acid storage disease.78
HP:0000938HP:0000938Osteopenia0SLC26A9 CL E G H11501914469ORPHA:586Cystic fibrosis5
HP:0000938HP:0000938Osteopenia0SLC2A2 CL E G H651411006ORPHA:2088Fanconi-Bickel syndromeHP:0040283 - Occasional71
HP:0000938HP:0000938Osteopenia0SLC34A1 CL E G H656911019OMIM:613388Fanconi renotubular syndrome 2.47
HP:0000938HP:0000938Osteopenia0SLC34A1 CL E G H656911019OMIM:612286Nephrolithiasis/osteoporosis, hypophosphatemic, 1.47
HP:0000938HP:0000938Osteopenia0SLC35A2 CL E G H735511022ORPHA:356961SLC35A2-CDGHP:0040284 - Very rare27
HP:0000938HP:0000938Osteopenia0SLC37A4 CL E G H25424061ORPHA:79259Glycogen storage disease due to glucose-6-phosphatase deficiency type IbHP:0040283 - Occasional110
HP:0000938HP:0000938Osteopenia0SLC39A13 CL E G H9125220859OMIM:612350Ehlers-Danlos syndrome, spondylodysplastic type, 324
HP:0000938HP:0000938Osteopenia0SLC39A13 CL E G H9125220859ORPHA:157965SLC39A13-related spondylodysplastic Ehlers-Danlos syndromeHP:0040282 - Frequent24
HP:0000938HP:0000938Osteopenia0SLC39A8 CL E G H6411620862OMIM:616721Congenital disorder of glycosylation, type IINHP:0040283 - Occasional11
HP:0000938HP:0000938Osteopenia0SLC39A8 CL E G H6411620862ORPHA:468699SLC39A8-CDGHP:0040283 - Occasional11
HP:0000938HP:0000938Osteopenia0SLC6A14 CL E G H1125411047ORPHA:586Cystic fibrosis
HP:0000938HP:0000938Osteopenia0SLC7A7 CL E G H905611065ORPHA:470Lysinuric protein intoleranceHP:0040282 - Frequent104
HP:0000938HP:0000938Osteopenia0SLC9A3 CL E G H655011073ORPHA:586Cystic fibrosis7
HP:0000938HP:0000938Osteopenia0SMARCAL1 CL E G H5048511102OMIM:242900Immunoosseous dysplasia, Schimke type.74
HP:0000938HP:0000938Osteopenia0SMARCD2 CL E G H660311107OMIM:617475SPECIFIC GRANULE DEFICIENCY 2; SGD23
HP:0000938HP:0000938Osteopenia0SMPD1 CL E G H660911120ORPHA:77293Niemann-Pick disease type BHP:0040282 - Frequent164
HP:0000938HP:0000938Osteopenia0SNORD115-1 CL E G H33843333020OMIM:176270Prader-Willi syndrome
HP:0000938HP:0000938Osteopenia0SNORD116-1 CL E G H10003341333067OMIM:176270Prader-Willi syndrome
HP:0000938HP:0000938Osteopenia0SNRPN CL E G H663811164ORPHA:98754Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15HP:0040283 - Occasional37
HP:0000938HP:0000938Osteopenia0SNRPN CL E G H663811164ORPHA:177901Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1HP:0040283 - Occasional37
HP:0000938HP:0000938Osteopenia0SNRPN CL E G H663811164ORPHA:177904Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2HP:0040283 - Occasional37
HP:0000938HP:0000938Osteopenia0SOX3 CL E G H665811199ORPHA:90695Non-acquired panhypopituitarismHP:0040283 - Occasional24
HP:0000938HP:0000938Osteopenia0SPIDR CL E G H2351428971ORPHA:24346,XX gonadal dysgenesisHP:0040282 - Frequent2
HP:0000938HP:0000938Osteopenia0SPRY4 CL E G H8184815533OMIM:615266Hypogonadotropic hypogonadism 17 with or without anosmia5
HP:0000938HP:0000938Osteopenia0SPRY4 CL E G H8184815533ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent5
HP:0000938HP:0000938Osteopenia0SRP54 CL E G H672911301ORPHA:486Autosomal dominant severe congenital neutropeniaHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0SRP54 CL E G H672911301ORPHA:811Shwachman-Diamond syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0STAT1 CL E G H677211362ORPHA:391487Autoimmune enteropathy and endocrinopathy-susceptibility to chronic infections syndromeHP:0040282 - Frequent89
HP:0000938HP:0000938Osteopenia0STAT1 CL E G H677211362OMIM:614162Immunodeficiency 31CHP:0040283 - Occasional89
HP:0000938HP:0000938Osteopenia0STAT3 CL E G H677411364ORPHA:2314Autosomal dominant hyper-IgE syndromeHP:0040282 - Frequent110
HP:0000938HP:0000938Osteopenia0STAT3 CL E G H677411364OMIM:147060Hyper-IgE recurrent infection syndrome.110
HP:0000938HP:0000938Osteopenia0STN1 CL E G H7999126200OMIM:617341Cerebroretinal microangiopathy with calcifications and cysts 2.2
HP:0000938HP:0000938Osteopenia0STX1A CL E G H680411433ORPHA:586Cystic fibrosis
HP:0000938HP:0000938Osteopenia0STX1A CL E G H680411433ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0STX3 CL E G H680911438OMIM:619445DIARRHEA 12, WITH MICROVILLUS ATROPHY; DIAR121
HP:0000938HP:0000938Osteopenia0STX3 CL E G H680911438OMIM:619446RETINAL DYSTROPHY AND MICROVILLUS INCLUSION DISEASE; RDMVID1
HP:0000938HP:0000938Osteopenia0TAC3 CL E G H686611521ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent6
HP:0000938HP:0000938Osteopenia0TACR3 CL E G H687011528ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent34
HP:0000938HP:0000938Osteopenia0TAF1 CL E G H687211535OMIM:300966MENTAL RETARDATION, X-LINKED, SYNDROMIC 33; MRXS3321
HP:0000938HP:0000938Osteopenia0TAPT1 CL E G H20201826887OMIM:616897Osteochondrodysplasia, complex lethal, Symoens-Barnes-Gistelinck type2
HP:0000938HP:0000938Osteopenia0TARS1 CL E G H689711572ORPHA:33364TrichothiodystrophyHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0TBL2 CL E G H2660811586ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0TCF12 CL E G H693811623OMIM:619718HYPOGONADOTROPIC HYPOGONADISM 26 WITH OR WITHOUT ANOSMIA; HH2628
HP:0000938HP:0000938Osteopenia0TCF4 CL E G H692511634ORPHA:171Primary sclerosing cholangitisHP:0040283 - Occasional241
HP:0000938HP:0000938Osteopenia0TCIRG1 CL E G H1031211647ORPHA:486Autosomal dominant severe congenital neutropeniaHP:0040283 - Occasional82
HP:0000938HP:0000938Osteopenia0TERT CL E G H701511730OMIM:614742PULMONARY FIBROSIS AND/OR BONE MARROW FAILURE, TELOMERE-RELATED, 1; PFBMFT1238
HP:0000938HP:0000938Osteopenia0TGFB1 CL E G H704011766ORPHA:586Cystic fibrosis13
HP:0000938HP:0000938Osteopenia0TMEM270 CL E G H13588623018ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0TMEM38B CL E G H5515125535OMIM:615066OSTEOGENESIS IMPERFECTA, TYPE XIV; OI144
HP:0000938HP:0000938Osteopenia0TMEM67 CL E G H9114728396ORPHA:140976RHYNS syndromeHP:0040282 - Frequent166
HP:0000938HP:0000938Osteopenia0TMEM67 CL E G H9114728396OMIM:602152Rhyns syndrome.166
HP:0000938HP:0000938Osteopenia0TNFRSF11B CL E G H498211909OMIM:239000Paget disease of bone 5, juvenile-onset44
HP:0000938HP:0000938Osteopenia0TOM1 CL E G H1004311982ORPHA:391487Autoimmune enteropathy and endocrinopathy-susceptibility to chronic infections syndromeHP:0040282 - Frequent
HP:0000938HP:0000938Osteopenia0TONSL CL E G H47967801OMIM:271510Spondyloepimetaphyseal dysplasia, Sponastrime type.
HP:0000938HP:0000938Osteopenia0TREM2 CL E G H5420917761OMIM:618193POLYCYSTIC LIPOMEMBRANOUS OSTEODYSPLASIA WITH SCLEROSING LEUKOENCEPHALOPATHY 2; PLOSL231
HP:0000938HP:0000938Osteopenia0TRPS1 CL E G H722712340OMIM:190350Trichorhinophalangeal syndrome, type I.HP:0003584 - Late onset171
HP:0000938HP:0000938Osteopenia0TRPS1 CL E G H722712340OMIM:190351Trichorhinophalangeal syndrome, type III.171
HP:0000938HP:0000938Osteopenia0TRPV6 CL E G H5550314006OMIM:618188Hyperparathyroidism, transient neonatal.4
HP:0000938HP:0000938Osteopenia0TTC26 CL E G H7998921882OMIM:619534BILIARY, RENAL, NEUROLOGIC, AND SKELETAL SYNDROME; BRENS
HP:0000938HP:0000938Osteopenia0UNC80 CL E G H28517526582OMIM:616801Hypotonia, infantile, with psychomotor retardation and characteristic facies 223
HP:0000938HP:0000938Osteopenia0UROD CL E G H738912591ORPHA:95159Hepatoerythropoietic porphyriaHP:0040283 - Occasional31
HP:0000938HP:0000938Osteopenia0UROS CL E G H739012592ORPHA:79277Congenital erythropoietic porphyriaHP:0040283 - Occasional41
HP:0000938HP:0000938Osteopenia0UROS CL E G H739012592OMIM:263700Porphyria, congenital erythropoietic.41
HP:0000938HP:0000938Osteopenia0USP9X CL E G H823912632ORPHA:480880X-linked female restricted facial dysmorphism-short stature-choanal atresia-intellectual disabilityHP:0040283 - Occasional27
HP:0000938HP:0000938Osteopenia0VPS37D CL E G H15538218287ORPHA:904Williams syndromeHP:0040283 - Occasional
HP:0000938HP:0000938Osteopenia0WDR11 CL E G H5571713831ORPHA:432Normosmic congenital hypogonadotropic hypogonadismHP:0040282 - Frequent10
HP:0000938HP:0000938Osteopenia0XYLT2 CL E G H6413215517OMIM:605822Spondyloocular syndrome.5
HP:0000938HP:0000938Osteopenia0ZMPSTE24 CL E G H1026912877ORPHA:1662Restrictive dermopathyHP:0040281 - Very frequent83
HP:0000938HP:0000938Osteopenia0ZNF699 CL E G H37487924750OMIM:619488DEGCAGS SYNDROME; DEGCAGS
HP:0000938HP:0000938Osteopenia0ZSWIM7 CL E G H12515026993ORPHA:24346,XX gonadal dysgenesisHP:0040282 - Frequent


Genes (292) :ADAMTS2 ADAMTSL2 ADCY10 AEBP1 AFF3 AIP ALDH18A1 ALG3 ANAPC1 ANO5 ANTXR2 ATP6V0A2 ATP7A ATP8B1 AVP B3GALT6 B3GAT3 B4GALT7 BAZ1B BCL7B BMP15 BNC1 BRAF BUD23 CARS1 CAVIN1 CCND1 CDC73 CDH23 CDKN1C CEACAM3 CEACAM6 CFTR CHD7 CHST3 CLCA4 CLIP2 CLPB COG1 COL1A1 COL5A1 COL5A2 COL7A1 COPB2 COX4I2 CREB3L1 CRIPT CRTAP CTC1 CTCF CYP19A1 CYP27A1 CYP3A4 DCAF17 DCHS1 DCTN4 DDOST DNAJC21 DNAJC30 DPM2 DUSP6 EDNRA EED EFL1 EIF4H ELANE ELN ERCC2 ERCC3 ESR1 FARSB FAT4 FBLN5 FBN1 FBN2 FGF17 FGF8 FGFR1 FGFR2 FKBP10 FKBP14 FKBP6 FLRT3 FOXA2 FSHR FUT8 GATA1 GBA1 GCLC GCM2 GEMIN4 GFI1 GLI2 GLIS3 GNAS GNPAT GNPTAB GNRH1 GNRHR GORAB GPAA1 GPR35 GSTM3 GTF2E2 GTF2H5 GTF2I GTF2IRD1 GTF2IRD2 GZF1 HBB HECW2 HERC2 HESX1 HFE HMOX1 HNRNPH1 HNRNPK HPGD HRAS HS6ST1 HSD17B4 IARS2 IER3IP1 IFIH1 IFITM5 IFT140 IGF1 IL17RD IL1RN IPW IRX5 KCNJ1 KCNN4 KISS1 KISS1R KL KNSTRN KRAS LAMA5 LHX4 LIFR LIMK1 LMNA LRP5 MAFB MAGEL2 MAN2B1 MBTPS2 MDM4 MEN1 METTL27 MGAT2 MIA3 MIF MKRN3 MKRN3-AS1 MLXIPL MMP1 MMP14 MMP2 MPLKIP MRPS22 MST1 MTAP MTTP MTX2 NAA20 NAGA NCF1 NDN NF1 NHERF1 NOTCH2 NPAP1 NPR2 NR5A1 NRAS NSMF NUP107 OCA2 OTX2 P3H1 P4HB PAPPA2 PDE11A PDGFRB PIGT PIGU PIGY PIK3CD PLEKHM1 PLOD1 PLOD2 PLOD3 PMM2 POC1A POLE POLR3A POLR3H POU1F1 PRKACA PRKAR1A PRLR PROK2 PROKR2 PROP1 PSAP PSMC3IP PTH1R PWAR1 PWRN1 PYCR1 PYGL RECQL4 RFC2 RNF113A RNF125 RNU4ATAC RPL11 RSPRY1 SATB2 SBDS SCARB2 SEC23A SEC24D SEMA4D SERPINA1 SERPINH1 SGMS2 SH3PXD2B SIM1 SKI SLC10A1 SLC11A1 SLC12A1 SLC17A5 SLC26A9 SLC2A2 SLC34A1 SLC35A2 SLC37A4 SLC39A13 SLC39A8 SLC6A14 SLC7A7 SLC9A3 SMARCAL1 SMARCD2 SMPD1 SNORD115-1 SNORD116-1 SNRPN SOX3 SPIDR SPRY4 SRP54 STAT1 STAT3 STN1 STX1A STX3 TAC3 TACR3 TAF1 TAPT1 TARS1 TBL2 TCF12 TCF4 TCIRG1 TERT TGFB1 TMEM270 TMEM38B TMEM67 TNFRSF11B TOM1 TONSL TREM2 TRPS1 TRPV6 TTC26 UNC80 UROD UROS USP9X VPS37D WDR11 XYLT2 ZMPSTE24 ZNF699 ZSWIM7

Diseases (234) :ORPHA:1901 OMIM:225410 OMIM:231050 ORPHA:2197 ORPHA:536532 OMIM:618000 OMIM:619297 ORPHA:2965 ORPHA:90348 OMIM:616603 ORPHA:79321 ORPHA:221008 OMIM:166260 ORPHA:53697 OMIM:228600 ORPHA:2176 ORPHA:2834 OMIM:278250 ORPHA:198 OMIM:211600 OMIM:125700 OMIM:609465 ORPHA:536467 OMIM:245600 ORPHA:75496 OMIM:130070 ORPHA:904 ORPHA:243 OMIM:115150 ORPHA:33364 OMIM:613327 ORPHA:29073 ORPHA:99879 ORPHA:91347 OMIM:614732 ORPHA:586 ORPHA:432 ORPHA:486 ORPHA:263508 OMIM:611209 ORPHA:287 OMIM:130060 OMIM:166200 ORPHA:79408 OMIM:619884 OMIM:612714 OMIM:616229 OMIM:615789 OMIM:610682 OMIM:612199 ORPHA:363611 ORPHA:91 ORPHA:909 OMIM:619073 ORPHA:3464 ORPHA:314679 OMIM:601390 OMIM:614507 ORPHA:300536 ORPHA:811 ORPHA:329178 OMIM:615269 OMIM:617561 OMIM:194050 OMIM:615363 ORPHA:785 OMIM:613658 OMIM:615546 ORPHA:2462 OMIM:121050 OMIM:615270 OMIM:147950 ORPHA:313855 OMIM:610968 OMIM:614557 ORPHA:300179 OMIM:615271 ORPHA:95494 OMIM:618005 ORPHA:79277 ORPHA:77259 OMIM:617343 OMIM:617913 OMIM:610199 OMIM:219080 OMIM:222765 OMIM:252500 OMIM:231070 OMIM:617810 ORPHA:529665 ORPHA:171 OMIM:617662 ORPHA:231222 OMIM:617268 OMIM:176270 OMIM:620083 ORPHA:352665 ORPHA:453504 OMIM:259100 OMIM:163200 OMIM:614880 OMIM:261515 OMIM:616007 OMIM:614231 OMIM:182250 OMIM:610967 OMIM:266920 OMIM:608747 OMIM:615267 OMIM:612852 OMIM:611174 OMIM:241200 OMIM:614837 OMIM:617994 ORPHA:221139 OMIM:613328 OMIM:620076 ORPHA:3206 OMIM:212112 OMIM:248370 ORPHA:1662 OMIM:601813 ORPHA:2788 OMIM:166300 ORPHA:398069 ORPHA:98754 ORPHA:177901 ORPHA:177904 ORPHA:309288 ORPHA:309282 OMIM:301014 OMIM:618849 OMIM:212066 ORPHA:79329 OMIM:619269 ORPHA:371428 OMIM:259600 OMIM:112250 ORPHA:14 OMIM:619127 OMIM:619717 OMIM:609241 ORPHA:97685 OMIM:612287 ORPHA:955 OMIM:102500 OMIM:615923 OMIM:610915 OMIM:112240 OMIM:619489 OMIM:610475 OMIM:601812 ORPHA:369837 OMIM:615398 OMIM:618590 OMIM:616809 OMIM:618107 OMIM:225400 ORPHA:1900 OMIM:609220 OMIM:612394 OMIM:212065 ORPHA:79318 OMIM:614813 OMIM:618336 ORPHA:3455 OMIM:615830 OMIM:610489 ORPHA:397685 ORPHA:90695 OMIM:610539 OMIM:156400 OMIM:612940 OMIM:614438 ORPHA:369 ORPHA:221016 OMIM:616260 ORPHA:2636 OMIM:612562 ORPHA:457395 OMIM:616723 ORPHA:251028 ORPHA:576283 OMIM:607812 OMIM:616294 OMIM:613848 OMIM:126550 OMIM:249420 ORPHA:398079 OMIM:182212 OMIM:619256 OMIM:601678 OMIM:269920 ORPHA:2088 OMIM:613388 OMIM:612286 ORPHA:356961 ORPHA:79259 OMIM:612350 ORPHA:157965 OMIM:616721 ORPHA:468699 ORPHA:470 OMIM:242900 OMIM:617475 ORPHA:77293 OMIM:615266 ORPHA:391487 OMIM:614162 ORPHA:2314 OMIM:147060 OMIM:617341 OMIM:619445 OMIM:619446 OMIM:300966 OMIM:616897 OMIM:619718 OMIM:614742 OMIM:615066 ORPHA:140976 OMIM:602152 OMIM:239000 OMIM:271510 OMIM:618193 OMIM:190350 OMIM:190351 OMIM:618188 OMIM:619534 OMIM:616801 ORPHA:95159 OMIM:263700 ORPHA:480880 OMIM:605822 OMIM:619488
 

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.