Human Phenotype Ontology 
Grandparent Node:
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Abnormality of the hand (HP:0001155)help
Grandparent Node:
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Aplasia/hypoplasia involving bones of the upper limbs (HP:0006496)help
Parent Node:
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Abnormal palm morphology (HP:0100871)help
Parent Node:
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Aplasia/hypoplasia involving bones of the hand (HP:0005927)help
..Starting node
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Short palm (HP:0004279)help
Term ID: 4279
Name: Short palm
Synonym: Hypoplastic hands; Short hands; Short palm; Short palms
Definition: Short palm.
Comments:
Reference: HP:0004279
Genes and Diseases:
 
       Child Nodes:

 Sister Nodes: 
..expandAbsent hand (HP:0004050) help
..expandAplasia/Hypoplasia involving the carpal bones (HP:0006502) help
..expandAplasia/Hypoplasia involving the metacarpal bones (HP:0005914) help
..expandAplasia/Hypoplasia of fingers (HP:0006265) help
..expandSmall hand (HP:0200055) help
InputHPO IDHPO termDistanceGeneGene id entrezHGNC IDDiseaseIdDiseaseNameFrequencyOnsetHGMD variantsClinVar variants
 
HPO disease - gene - phenotype typical associations:
 
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0004279HP:0004279Short palm0ADAMTSL2 CL E G H971914631OMIM:231050Geleophysic dysplasia 1.72
HP:0004279HP:0004279Short palm0ANKRD11 CL E G H2912321316OMIM:148050Kbg syndrome102
HP:0004279HP:0004279Short palm0ANTXR2 CL E G H11842921732ORPHA:2176Infantile systemic hyalinosisHP:0040281 - Very frequent49
HP:0004279HP:0004279Short palm0ATP7A CL E G H538869ORPHA:198Occipital horn syndromeHP:0040282 - Frequent192
HP:0004279HP:0004279Short palm0B3GLCT CL E G H14517320207OMIM:261540Peters-Plus syndrome.36
HP:0004279HP:0004279Short palm0BCR CL E G H6131014ORPHA:261330Distal 22q11.2 microdeletion syndromeHP:0040283 - Occasional5
HP:0004279HP:0004279Short palm0BGN CL E G H6331044OMIM:300106Spondyloepimetaphyseal dysplasia, X-linked.7
HP:0004279HP:0004279Short palm0BHLHA9 CL E G H72785735126ORPHA:157801Mesoaxial synostotic syndactyly with phalangeal reductionHP:0040281 - Very frequent4
HP:0004279HP:0004279Short palm0CAMK2G CL E G H8181463OMIM:618522Intellectual developmental disorder 59.1
HP:0004279HP:0004279Short palm0CAMTA1 CL E G H2326118806OMIM:614756Cerebellar ataxia, nonprogressive, with mental retardation34
HP:0004279HP:0004279Short palm0CCBE1 CL E G H14737229426OMIM:235510Hennekam lymphangiectasia-lymphedema syndrome.147
HP:0004279HP:0004279Short palm0CHSY1 CL E G H2285617198ORPHA:363417Temtamy preaxial brachydactyly syndromeHP:0040283 - Occasional16
HP:0004279HP:0004279Short palm0COG4 CL E G H2583918620ORPHA:85172Microcephalic osteodysplastic dysplasia, Saul-Wilson typeHP:0040281 - Very frequent67
HP:0004279HP:0004279Short palm0COL11A1 CL E G H13012186OMIM:228520Fibrochondrogenesis 1.215
HP:0004279HP:0004279Short palm0COL11A2 CL E G H13022187OMIM:215150Otospondylomegaepiphyseal dysplasia.222
HP:0004279HP:0004279Short palm0COL2A1 CL E G H12802200ORPHA:85166Platyspondylic dysplasia, Torrance typeHP:0040281 - Very frequent284
HP:0004279HP:0004279Short palm0COL9A2 CL E G H12982218OMIM:600204Epiphyseal dysplasia, multiple, 2.110
HP:0004279HP:0004279Short palm0CRKL CL E G H13992363ORPHA:261330Distal 22q11.2 microdeletion syndromeHP:0040283 - Occasional
HP:0004279HP:0004279Short palm0CRLF1 CL E G H92442364OMIM:272430Crisponi/cold-induced sweating syndrome 1.24
HP:0004279HP:0004279Short palm0CUL4B CL E G H84502555ORPHA:85293X-linked intellectual disability, Cabezas typeHP:0040281 - Very frequent38
HP:0004279HP:0004279Short palm0DPM1 CL E G H88133005OMIM:608799Congenital disorder of glycosylation, type IE.27
HP:0004279HP:0004279Short palm0DVL1 CL E G H18553084ORPHA:3107Autosomal dominant Robinow syndromeHP:0040281 - Very frequent14
HP:0004279HP:0004279Short palm0DVL1 CL E G H18553084OMIM:180700Robinow syndrome, autosomal dominant 1.14
HP:0004279HP:0004279Short palm0DVL3 CL E G H18573087ORPHA:3107Autosomal dominant Robinow syndromeHP:0040281 - Very frequent5
HP:0004279HP:0004279Short palm0DYNC1H1 CL E G H17782961OMIM:614563Mental retardation, autosomal dominant 13427
HP:0004279HP:0004279Short palm0DYNC2H1 CL E G H796592962ORPHA:93271Short rib-polydactyly syndrome, Verma-Naumoff typeHP:0040281 - Very frequent304
HP:0004279HP:0004279Short palm0DYNC2I1 CL E G H5511221862ORPHA:93271Short rib-polydactyly syndrome, Verma-Naumoff typeHP:0040281 - Very frequent
HP:0004279HP:0004279Short palm0DYNC2I2 CL E G H8989128296ORPHA:93271Short rib-polydactyly syndrome, Verma-Naumoff typeHP:0040281 - Very frequent
HP:0004279HP:0004279Short palm0EVC CL E G H21213497OMIM:193530Weyers acrofacial dysostosis.209
HP:0004279HP:0004279Short palm0EVC2 CL E G H13288419747OMIM:193530Weyers acrofacial dysostosis.137
HP:0004279HP:0004279Short palm0FBN1 CL E G H22003603ORPHA:969Acromicric dysplasiaHP:0040281 - Very frequent1361
HP:0004279HP:0004279Short palm0FBN1 CL E G H22003603OMIM:102370Acromicric dysplasia.1361
HP:0004279HP:0004279Short palm0FBN1 CL E G H22003603OMIM:614185GELEOPHYSIC DYSPLASIA 2; GPHYSD21361
HP:0004279HP:0004279Short palm0FGD1 CL E G H22453663OMIM:305400Aarskog-Scott syndrome62
HP:0004279HP:0004279Short palm0FGD1 CL E G H22453663ORPHA:915Aarskog-Scott syndromeHP:0040281 - Very frequent62
HP:0004279HP:0004279Short palm0FGF9 CL E G H22543687ORPHA:3237Multiple synostoses syndromeHP:0040281 - Very frequent75
HP:0004279HP:0004279Short palm0FGFR1 CL E G H22603688OMIM:166250Osteoglophonic dysplasia.172
HP:0004279HP:0004279Short palm0FGFR1 CL E G H22603688ORPHA:93258Pfeiffer syndrome type 1HP:0040282 - Frequent172
HP:0004279HP:0004279Short palm0FGFR2 CL E G H22633689ORPHA:93258Pfeiffer syndrome type 1HP:0040282 - Frequent175
HP:0004279HP:0004279Short palm0FGFR3 CL E G H22613690ORPHA:53271Muenke syndromeHP:0040282 - Frequent145
HP:0004279HP:0004279Short palm0FLNA CL E G H23163754ORPHA:90650Otopalatodigital syndrome type 1HP:0040282 - Frequent493
HP:0004279HP:0004279Short palm0FLNA CL E G H23163754ORPHA:90652Otopalatodigital syndrome type 2HP:0040282 - Frequent493
HP:0004279HP:0004279Short palm0FZD2 CL E G H25354040ORPHA:93328Autosomal dominant omodysplasiaHP:0040283 - Occasional
HP:0004279HP:0004279Short palm0FZD2 CL E G H25354040ORPHA:3107Autosomal dominant Robinow syndromeHP:0040281 - Very frequent
HP:0004279HP:0004279Short palm0GATA1 CL E G H26234170OMIM:190685Down syndrometrisomy 21, included.29
HP:0004279HP:0004279Short palm0GDF5 CL E G H82004220ORPHA:3237Multiple synostoses syndromeHP:0040281 - Very frequent52
HP:0004279HP:0004279Short palm0GPC3 CL E G H27194451OMIM:312870Simpson-golabi-behmel syndrome, type 1.73
HP:0004279HP:0004279Short palm0GPC4 CL E G H22394452OMIM:312870Simpson-golabi-behmel syndrome, type 1.
HP:0004279HP:0004279Short palm0GPX4 CL E G H28794556ORPHA:93317Spondylometaphyseal dysplasia, Sedaghatian typeHP:0040281 - Very frequent3
HP:0004279HP:0004279Short palm0HDAC4 CL E G H975914063ORPHA:10012q37 microdeletion syndromeHP:0040282 - Frequent33
HP:0004279HP:0004279Short palm0HDAC6 CL E G H1001314064ORPHA:163966X-linked dominant chondrodysplasia, Chassaing-Lacombe typeHP:0040281 - Very frequent2
HP:0004279HP:0004279Short palm0HERC2 CL E G H89244868OMIM:176270Prader-Willi syndrome38
HP:0004279HP:0004279Short palm0HNRNPR CL E G H102365047OMIM:620073
HP:0004279HP:0004279Short palm0IFT80 CL E G H5756029262ORPHA:93271Short rib-polydactyly syndrome, Verma-Naumoff typeHP:0040281 - Very frequent65
HP:0004279HP:0004279Short palm0IGF1R CL E G H34805465ORPHA:73273Growth delay due to insulin-like growth factor I resistanceHP:0040282 - Frequent268
HP:0004279HP:0004279Short palm0IHH CL E G H35495956OMIM:607778Acrocapitofemoral dysplasia.44
HP:0004279HP:0004279Short palm0IHH CL E G H35495956ORPHA:63446Acrocapitofemoral dysplasiaHP:0040281 - Very frequent44
HP:0004279HP:0004279Short palm0IHH CL E G H35495956OMIM:112500Brachydactyly, type A1.44
HP:0004279HP:0004279Short palm0INPP5K CL E G H5176333882ORPHA:559Marinesco-Sjögren syndromeHP:0040282 - Frequent7
HP:0004279HP:0004279Short palm0INPPL1 CL E G H36366080OMIM:258480OPSISMODYSPLASIA.18
HP:0004279HP:0004279Short palm0IPW CL E G H36536109OMIM:176270Prader-Willi syndrome
HP:0004279HP:0004279Short palm0KAT6B CL E G H2352217582ORPHA:85201Genitopatellar syndromeHP:0040281 - Very frequent141
HP:0004279HP:0004279Short palm0KCNJ2 CL E G H37596263OMIM:170390Andersen cardiodysrhythmic periodic paralysis.193
HP:0004279HP:0004279Short palm0KDM4B CL E G H2303029136OMIM:619320INTELLECTUAL DEVELOPMENTAL DISORDER, AUTOSOMAL DOMINANT 65; MRD65
HP:0004279HP:0004279Short palm0KDM5C CL E G H824211114ORPHA:85279Syndromic X-linked intellectual disability due to JARID1C mutationHP:0040283 - Occasional81
HP:0004279HP:0004279Short palm0KLHL15 CL E G H8031129347OMIM:300982MENTAL RETARDATION, X-LINKED 103; MRX1033
HP:0004279HP:0004279Short palm0KRAS CL E G H38456407ORPHA:3339Toriello-Lacassie-Droste syndromeHP:0040282 - Frequent196
HP:0004279HP:0004279Short palm0LMNA CL E G H40006636ORPHA:79474Atypical Werner syndromeHP:0040281 - Very frequent645
HP:0004279HP:0004279Short palm0LTBP3 CL E G H40546716ORPHA:969Acromicric dysplasiaHP:0040281 - Very frequent12
HP:0004279HP:0004279Short palm0MAGEL2 CL E G H545516814OMIM:176270Prader-Willi syndrome63
HP:0004279HP:0004279Short palm0MAP3K7 CL E G H68856859ORPHA:3238Cardiospondylocarpofacial syndromeHP:0040281 - Very frequent11
HP:0004279HP:0004279Short palm0MAPK1 CL E G H55946871ORPHA:261330Distal 22q11.2 microdeletion syndromeHP:0040283 - Occasional2
HP:0004279HP:0004279Short palm0MAPRE2 CL E G H109826891OMIM:616734Skin creases, congenital symmetric circumferential, 2HP:0040283 - Occasional4
HP:0004279HP:0004279Short palm0MBD5 CL E G H5577720444ORPHA:2284022q23.1 microdeletion syndromeHP:0040282 - Frequent252
HP:0004279HP:0004279Short palm0MBD5 CL E G H5577720444OMIM:156200Mental retardation, autosomal dominant 1252
HP:0004279HP:0004279Short palm0MKRN3 CL E G H76817114OMIM:176270Prader-Willi syndrome5
HP:0004279HP:0004279Short palm0MKRN3-AS1 CL E G H10108OMIM:176270Prader-Willi syndrome
HP:0004279HP:0004279Short palm0MRPS28 CL E G H2895714513OMIM:618958COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 47; COXPD47
HP:0004279HP:0004279Short palm0MSL3 CL E G H109437370OMIM:301032BASILICATA-AKHTAR SYNDROME; MRXSBA
HP:0004279HP:0004279Short palm0NOG CL E G H92417866ORPHA:3237Multiple synostoses syndromeHP:0040281 - Very frequent22
HP:0004279HP:0004279Short palm0NPAP1 CL E G H237421190OMIM:176270Prader-Willi syndrome1
HP:0004279HP:0004279Short palm0ORC1 CL E G H49988487OMIM:224690Meier-Gorlin syndrome 1.53
HP:0004279HP:0004279Short palm0PIGL CL E G H94878966ORPHA:3474CHIME syndromeHP:0040282 - Frequent36
HP:0004279HP:0004279Short palm0PIK3R1 CL E G H52958979ORPHA:3163SHORT syndromeHP:0040283 - Occasional43
HP:0004279HP:0004279Short palm0PPP2R3C CL E G H5501217485OMIM:618419Gonadal dysgenesis, dysmorphic facies, retinal dystrophy, and myopathy.
HP:0004279HP:0004279Short palm0PRKAR1A CL E G H55739388OMIM:101800Acrodysostosis 1, with or without hormone resistance134
HP:0004279HP:0004279Short palm0PTDSS1 CL E G H97919587ORPHA:2658Lenz-Majewski hyperostotic dwarfismHP:0040281 - Very frequent6
HP:0004279HP:0004279Short palm0PTH1R CL E G H57459608ORPHA:79106Eiken syndromeHP:0040282 - Frequent58
HP:0004279HP:0004279Short palm0PUF60 CL E G H2282717042ORPHA:508498Intellectual disability-cardiac anomalies-short stature-joint laxity syndromeHP:0040283 - Occasional19
HP:0004279HP:0004279Short palm0PWAR1 CL E G H14562430089OMIM:176270Prader-Willi syndrome
HP:0004279HP:0004279Short palm0PWRN1 CL E G H79111433235OMIM:176270Prader-Willi syndrome
HP:0004279HP:0004279Short palm0RAB3GAP2 CL E G H2578217168OMIM:212720Martsolf syndrome 1.135
HP:0004279HP:0004279Short palm0RAI1 CL E G H107439834OMIM:182290Smith-Magenis syndrome150
HP:0004279HP:0004279Short palm0RBPJ CL E G H35165724OMIM:614814Adams-Oliver syndrome 33
HP:0004279HP:0004279Short palm0RECQL4 CL E G H94019949OMIM:268400ROTHMUND-THOMSON SYNDROME; RTS445
HP:0004279HP:0004279Short palm0RMRP CL E G H602310031OMIM:607095Anauxetic dysplasia37
HP:0004279HP:0004279Short palm0RMRP CL E G H602310031ORPHA:175Cartilage-hair hypoplasiaHP:0040281 - Very frequent37
HP:0004279HP:0004279Short palm0RMRP CL E G H602310031OMIM:250250Cartilage-Hair hypoplasia.37
HP:0004279HP:0004279Short palm0RNU4ATAC CL E G H10015168334016ORPHA:2636Microcephalic osteodysplastic primordial dwarfism types I and IIIHP:0040281 - Very frequent15
HP:0004279HP:0004279Short palm0ROR2 CL E G H492010257OMIM:268310Robinow syndrome, autosomal recessive.120
HP:0004279HP:0004279Short palm0RSPRY1 CL E G H8997029420ORPHA:457395Progressive spondyloepimetaphyseal dysplasia-short stature-short fourth metatarsals-intellectual disability syndromeHP:0040282 - Frequent2
HP:0004279HP:0004279Short palm0SCUBE3 CL E G H22266313655OMIM:619184SHORT STATURE, FACIAL DYSMORPHISM, AND SKELETAL ANOMALIES WITH OR WITHOUT CARDIAC ANOMALIES 2; SSFSC21
HP:0004279HP:0004279Short palm0SH3PXD2B CL E G H28559029242OMIM:249420Frank-ter Haar syndrome134
HP:0004279HP:0004279Short palm0SIL1 CL E G H6437424624ORPHA:559Marinesco-Sjögren syndromeHP:0040282 - Frequent67
HP:0004279HP:0004279Short palm0SIN3A CL E G H2594219353OMIM:613406Witteveen-Kolk syndrome9
HP:0004279HP:0004279Short palm0SMAD4 CL E G H40896770ORPHA:2588Myhre syndromeHP:0040281 - Very frequent504
HP:0004279HP:0004279Short palm0SMARCA2 CL E G H659511098ORPHA:3051Nicolaides-Baraitser syndromeHP:0040281 - Very frequent146
HP:0004279HP:0004279Short palm0SNIP1 CL E G H7975330587OMIM:614501Psychomotor retardation, epilepsy, and craniofacial dysmorphism.3
HP:0004279HP:0004279Short palm0SNORD115-1 CL E G H33843333020OMIM:176270Prader-Willi syndrome
HP:0004279HP:0004279Short palm0SNORD116-1 CL E G H10003341333067OMIM:176270Prader-Willi syndrome
HP:0004279HP:0004279Short palm0TBCE CL E G H690511582OMIM:241410Hypoparathyroidism-Retardation-Dysmorphism syndrome.52
HP:0004279HP:0004279Short palm0TBCE CL E G H690511582OMIM:244460Kenny-caffey syndrome, type 1.52
HP:0004279HP:0004279Short palm0TBL1XR1 CL E G H7971829529OMIM:602342Pierpont syndrome.22
HP:0004279HP:0004279Short palm0TCF4 CL E G H692511634OMIM:610954Pitt-Hopkins syndrome241
HP:0004279HP:0004279Short palm0TMEM53 CL E G H7963926186OMIM:619727CRANIOTUBULAR DYSPLASIA, IKEGAWA TYPE; CTDI
HP:0004279HP:0004279Short palm0TONSL CL E G H47967801ORPHA:93357SPONASTRIME dysplasiaHP:0040283 - Occasional
HP:0004279HP:0004279Short palm0TRIO CL E G H720412303ORPHA:476126Micrognathia-recurrent infections-behavioral abnormalities-mild intellectual disability syndromeHP:0040283 - Occasional8
HP:0004279HP:0004279Short palm0TRIP11 CL E G H932112305ORPHA:93299Achondrogenesis type 1AHP:0040282 - Frequent133
HP:0004279HP:0004279Short palm0TRIP11 CL E G H932112305ORPHA:166272OdontochondrodysplasiaHP:0040281 - Very frequent133
HP:0004279HP:0004279Short palm0TRPS1 CL E G H722712340OMIM:190351Trichorhinophalangeal syndrome, type III.171
HP:0004279HP:0004279Short palm0WAC CL E G H5132217327ORPHA:466950Facial dysmorphism-developmental delay-behavioral abnormalities syndrome due to WAC point mutationHP:0040283 - Occasional20
HP:0004279HP:0004279Short palm0WDR35 CL E G H5753929250ORPHA:93271Short rib-polydactyly syndrome, Verma-Naumoff typeHP:0040281 - Very frequent136
HP:0004279HP:0004279Short palm0WDR81 CL E G H12499726600OMIM:610185Cerebellar ataxia, mental retardation, and dysequilibrium syndrome2.27
HP:0004279HP:0004279Short palm0WNT5A CL E G H747412784ORPHA:3107Autosomal dominant Robinow syndromeHP:0040281 - Very frequent98
HP:0004279HP:0004279Short palm0WNT5A CL E G H747412784OMIM:180700Robinow syndrome, autosomal dominant 1.98
HP:0004279HP:0004279Short palm0YY1AP1 CL E G H5524930935ORPHA:79094Grange syndromeHP:0040282 - Frequent5


Genes (111) :ADAMTSL2 ANKRD11 ANTXR2 ATP7A B3GLCT BCR BGN BHLHA9 CAMK2G CAMTA1 CCBE1 CHSY1 COG4 COL11A1 COL11A2 COL2A1 COL9A2 CRKL CRLF1 CUL4B DPM1 DVL1 DVL3 DYNC1H1 DYNC2H1 DYNC2I1 DYNC2I2 EVC EVC2 FBN1 FGD1 FGF9 FGFR1 FGFR2 FGFR3 FLNA FZD2 GATA1 GDF5 GPC3 GPC4 GPX4 HDAC4 HDAC6 HERC2 HNRNPR IFT80 IGF1R IHH INPP5K INPPL1 IPW KAT6B KCNJ2 KDM4B KDM5C KLHL15 KRAS LMNA LTBP3 MAGEL2 MAP3K7 MAPK1 MAPRE2 MBD5 MKRN3 MKRN3-AS1 MRPS28 MSL3 NOG NPAP1 ORC1 PIGL PIK3R1 PPP2R3C PRKAR1A PTDSS1 PTH1R PUF60 PWAR1 PWRN1 RAB3GAP2 RAI1 RBPJ RECQL4 RMRP RNU4ATAC ROR2 RSPRY1 SCUBE3 SH3PXD2B SIL1 SIN3A SMAD4 SMARCA2 SNIP1 SNORD115-1 SNORD116-1 TBCE TBL1XR1 TCF4 TMEM53 TONSL TRIO TRIP11 TRPS1 WAC WDR35 WDR81 WNT5A YY1AP1

Diseases (100) :OMIM:231050 OMIM:148050 ORPHA:2176 ORPHA:198 OMIM:261540 ORPHA:261330 OMIM:300106 ORPHA:157801 OMIM:618522 OMIM:614756 OMIM:235510 ORPHA:363417 ORPHA:85172 OMIM:228520 OMIM:215150 ORPHA:85166 OMIM:600204 OMIM:272430 ORPHA:85293 OMIM:608799 ORPHA:3107 OMIM:180700 OMIM:614563 ORPHA:93271 OMIM:193530 ORPHA:969 OMIM:102370 OMIM:614185 OMIM:305400 ORPHA:915 ORPHA:3237 OMIM:166250 ORPHA:93258 ORPHA:53271 ORPHA:90650 ORPHA:90652 ORPHA:93328 OMIM:190685 OMIM:312870 ORPHA:93317 ORPHA:1001 ORPHA:163966 OMIM:176270 OMIM:620073 ORPHA:73273 OMIM:607778 ORPHA:63446 OMIM:112500 ORPHA:559 OMIM:258480 ORPHA:85201 OMIM:170390 OMIM:619320 ORPHA:85279 OMIM:300982 ORPHA:3339 ORPHA:79474 ORPHA:3238 OMIM:616734 ORPHA:228402 OMIM:156200 OMIM:618958 OMIM:301032 OMIM:224690 ORPHA:3474 ORPHA:3163 OMIM:618419 OMIM:101800 ORPHA:2658 ORPHA:79106 ORPHA:508498 OMIM:212720 OMIM:182290 OMIM:614814 OMIM:268400 OMIM:607095 ORPHA:175 OMIM:250250 ORPHA:2636 OMIM:268310 ORPHA:457395 OMIM:619184 OMIM:249420 OMIM:613406 ORPHA:2588 ORPHA:3051 OMIM:614501 OMIM:241410 OMIM:244460 OMIM:602342 OMIM:610954 OMIM:619727 ORPHA:93357 ORPHA:476126 ORPHA:93299 ORPHA:166272 OMIM:190351 ORPHA:466950 OMIM:610185 ORPHA:79094
 

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.