Human Phenotype Ontology 
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Short stature (HP:0004322)help
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Proportionate short stature (HP:0003508)help
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Severe short stature (HP:0003510)help
Term ID: 3510
Name: Severe short stature
Synonym: Dwarfism; Proportionate dwarfism; Severe short stature; Short stature, extreme; Short stature, severe
Definition: A severe degree of short stature, more than -4 SD from the mean corrected for age and sex.
Comments:
Reference: HP:0003510
Genes and Diseases:
 
       Child Nodes:

 Sister Nodes: 
..expandMild short stature (HP:0003502) help
..expandModerately short stature (HP:0008848) help
InputHPO IDHPO termDistanceGeneGene id entrezHGNC IDDiseaseIdDiseaseNameFrequencyOnsetHGMD variantsClinVar variants
 
HPO disease - gene - phenotype typical associations:
 
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0003510HP:0003510Severe short stature0ADAMTS2 CL E G H9509218ORPHA:1901Dermatosparaxis Ehlers-Danlos syndromeHP:0040281 - Very frequent165
HP:0003510HP:0003510Severe short stature0ADAMTSL2 CL E G H971914631ORPHA:1901Dermatosparaxis Ehlers-Danlos syndromeHP:0040281 - Very frequent72
HP:0003510HP:0003510Severe short stature0ALDH18A1 CL E G H58329722OMIM:219150Cutis laxa, autosomal recessive, type IIIA.89
HP:0003510HP:0003510Severe short stature0AMER1 CL E G H13928526837ORPHA:2780Osteopathia striata-cranial sclerosis syndromeHP:0040283 - Occasional34
HP:0003510HP:0003510Severe short stature0ANTXR2 CL E G H11842921732ORPHA:2176Infantile systemic hyalinosisHP:0040281 - Very frequent49
HP:0003510HP:0003510Severe short stature0ATP11A CL E G H2325013552OMIM:619851LEUKODYSTROPHY, HYPOMYELINATING, 24; HLD24
HP:0003510HP:0003510Severe short stature0B3GALT6 CL E G H12679217978OMIM:271640Spondyloepimetaphyseal dysplasia with joint laxity, type 1, with or without fractures38
HP:0003510HP:0003510Severe short stature0BRF1 CL E G H297211551ORPHA:444072Cerebellar-facial-dental syndromeHP:0040283 - Occasional7
HP:0003510HP:0003510Severe short stature0CANT1 CL E G H12458319721OMIM:251450Desbuquois dysplasia 1.HP:0003577 - Congenital onset85
HP:0003510HP:0003510Severe short stature0CANT1 CL E G H12458319721ORPHA:1425Desbuquois syndromeHP:0040281 - Very frequent85
HP:0003510HP:0003510Severe short stature0CDC45 CL E G H83181739ORPHA:2554Ear-patella-short stature syndromeHP:0040281 - Very frequent9
HP:0003510HP:0003510Severe short stature0CDC6 CL E G H9901744ORPHA:2554Ear-patella-short stature syndromeHP:0040281 - Very frequent31
HP:0003510HP:0003510Severe short stature0CDT1 CL E G H8162024576ORPHA:2554Ear-patella-short stature syndromeHP:0040281 - Very frequent50
HP:0003510HP:0003510Severe short stature0CENPT CL E G H8015225787OMIM:618702SHORT STATURE AND MICROCEPHALY WITH GENITAL ANOMALIES; SSMGA
HP:0003510HP:0003510Severe short stature0CKAP2L CL E G H15046826877ORPHA:3255Filippi syndromeHP:0040281 - Very frequent7
HP:0003510HP:0003510Severe short stature0COL1A1 CL E G H12772197ORPHA:1899Arthrochalasia Ehlers-Danlos syndromeHP:0040281 - Very frequent373
HP:0003510HP:0003510Severe short stature0COL1A2 CL E G H12782198ORPHA:1899Arthrochalasia Ehlers-Danlos syndromeHP:0040281 - Very frequent243
HP:0003510HP:0003510Severe short stature0COL2A1 CL E G H12802200OMIM:184250Spondyloepimetaphyseal dysplasia, Strudwick type.284
HP:0003510HP:0003510Severe short stature0COL2A1 CL E G H12802200ORPHA:93316Spondylometaphyseal dysplasia, Schmidt typeHP:0040282 - Frequent284
HP:0003510HP:0003510Severe short stature0COMP CL E G H13112227OMIM:132400Epiphyseal dysplasia, multiple, 1.89
HP:0003510HP:0003510Severe short stature0COX7B CL E G H13492291ORPHA:2556Microphthalmia with linear skin defects syndromeHP:0040282 - Frequent6
HP:0003510HP:0003510Severe short stature0CRIPT CL E G H941914312OMIM:615789Short stature with microcephaly and distinctive facies4
HP:0003510HP:0003510Severe short stature0CSGALNACT1 CL E G H5579024290ORPHA:1425Desbuquois syndromeHP:0040281 - Very frequent
HP:0003510HP:0003510Severe short stature0CTSA CL E G H54769251OMIM:256540Galactosialidosis.51
HP:0003510HP:0003510Severe short stature0DDRGK1 CL E G H6599216110ORPHA:93352Spondyloepimetaphyseal dysplasia, Shohat typeHP:0040282 - Frequent
HP:0003510HP:0003510Severe short stature0DHCR24 CL E G H17182859ORPHA:35107DesmosterolosisHP:0040281 - Very frequent72
HP:0003510HP:0003510Severe short stature0DLL3 CL E G H106832909OMIM:277300Spondylocostal dysostosis, autosomal recessive 145
HP:0003510HP:0003510Severe short stature0DLX5 CL E G H17492918OMIM:220600Split-Hand/foot malformation 1 with sensorineural hearing lossHP:0040283 - Occasional3
HP:0003510HP:0003510Severe short stature0DNMT3A CL E G H17882978OMIM:618724HEYN-SPROUL-JACKSON SYNDROME; HESJAS44
HP:0003510HP:0003510Severe short stature0DVL1 CL E G H18553084ORPHA:3107Autosomal dominant Robinow syndromeHP:0040282 - Frequent14
HP:0003510HP:0003510Severe short stature0DVL3 CL E G H18573087ORPHA:3107Autosomal dominant Robinow syndromeHP:0040282 - Frequent5
HP:0003510HP:0003510Severe short stature0DYM CL E G H5480821317ORPHA:239Dyggve-Melchior-Clausen diseaseHP:0040282 - Frequent65
HP:0003510HP:0003510Severe short stature0EPRS1 CL E G H20583418OMIM:617951Leukodystrophy, hypomyelinating, 15
HP:0003510HP:0003510Severe short stature0ERCC4 CL E G H20723436OMIM:610965XFE progeroid syndrome.158
HP:0003510HP:0003510Severe short stature0ERCC6 CL E G H20743438OMIM:133540Cockayne syndrome, type B.199
HP:0003510HP:0003510Severe short stature0ERCC6 CL E G H20743438OMIM:278800De Sanctis-Cacchione syndrome.199
HP:0003510HP:0003510Severe short stature0ESCO2 CL E G H15757027230ORPHA:2319Juberg-Hayward syndromeHP:0040281 - Very frequent92
HP:0003510HP:0003510Severe short stature0FAM111A CL E G H6390124725OMIM:127000Kenny-caffey syndrome, type 2.8
HP:0003510HP:0003510Severe short stature0FBN1 CL E G H22003603ORPHA:969Acromicric dysplasiaHP:0040281 - Very frequent1361
HP:0003510HP:0003510Severe short stature0FBN1 CL E G H22003603OMIM:102370Acromicric dysplasia.1361
HP:0003510HP:0003510Severe short stature0FGFR1 CL E G H22603688ORPHA:2645Osteoglosphonic dysplasiaHP:0040281 - Very frequent172
HP:0003510HP:0003510Severe short stature0FGFR3 CL E G H22613690OMIM:616482Achondroplasia, severe, with developmental delay and acanthosis nigricans.145
HP:0003510HP:0003510Severe short stature0FLNB CL E G H23173755OMIM:112310Boomerang dysplasia.233
HP:0003510HP:0003510Severe short stature0FZD2 CL E G H25354040ORPHA:3107Autosomal dominant Robinow syndromeHP:0040282 - Frequent
HP:0003510HP:0003510Severe short stature0GH1 CL E G H26884261OMIM:262400Growth hormone deficiency, isolated, type IA.50
HP:0003510HP:0003510Severe short stature0GH1 CL E G H26884261OMIM:173100Isolated growth hormone deficiency, type II.50
HP:0003510HP:0003510Severe short stature0GHR CL E G H26904263OMIM:262500Laron syndrome.98
HP:0003510HP:0003510Severe short stature0GHR CL E G H26904263ORPHA:633Laron syndromeHP:0040281 - Very frequent98
HP:0003510HP:0003510Severe short stature0GHRHR CL E G H26924266OMIM:618157ISOLATED GROWTH HORMONE DEFICIENCY, TYPE IV; IGHD444
HP:0003510HP:0003510Severe short stature0GLB1 CL E G H27204298OMIM:230500GM1-gangliosidosis, type I.120
HP:0003510HP:0003510Severe short stature0GMNN CL E G H5105317493ORPHA:2554Ear-patella-short stature syndromeHP:0040281 - Very frequent3
HP:0003510HP:0003510Severe short stature0GMNN CL E G H5105317493OMIM:616835Meier-Gorlin syndrome 63
HP:0003510HP:0003510Severe short stature0GORAB CL E G H9234425676ORPHA:2078Geroderma osteodysplasticaHP:0040281 - Very frequent52
HP:0003510HP:0003510Severe short stature0GORAB CL E G H9234425676OMIM:231070Geroderma osteodysplasticum.52
HP:0003510HP:0003510Severe short stature0HCCS CL E G H30524837ORPHA:2556Microphthalmia with linear skin defects syndromeHP:0040282 - Frequent11
HP:0003510HP:0003510Severe short stature0HHAT CL E G H5573318270ORPHA:1422Chondrodysplasia-disorder of sex development syndromeHP:0040281 - Very frequent
HP:0003510HP:0003510Severe short stature0HHAT CL E G H5573318270OMIM:600092Nivelon-Nivelon-Mabille syndrome
HP:0003510HP:0003510Severe short stature0HSPA9 CL E G H33135244OMIM:616854Even-Plus syndrome6
HP:0003510HP:0003510Severe short stature0HSPG2 CL E G H33395273ORPHA:1865Dyssegmental dysplasia, Silverman-Handmaker typeHP:0040282 - Frequent345
HP:0003510HP:0003510Severe short stature0IDS CL E G H34235389OMIM:309900Mucopolysaccharidosis, type II.86
HP:0003510HP:0003510Severe short stature0INPP5K CL E G H5176333882ORPHA:559Marinesco-Sjögren syndromeHP:0040281 - Very frequent7
HP:0003510HP:0003510Severe short stature0INPPL1 CL E G H36366080ORPHA:2746OpsismodysplasiaHP:0040281 - Very frequent18
HP:0003510HP:0003510Severe short stature0KAT6B CL E G H2352217582ORPHA:3047Blepharophimosis-intellectual disability syndrome, SBBYS typeHP:0040281 - Very frequent141
HP:0003510HP:0003510Severe short stature0KIF11 CL E G H38326388ORPHA:2526Microcephaly-lymphedema-chorioretinopathy syndromeHP:0040283 - Occasional46
HP:0003510HP:0003510Severe short stature0LARP7 CL E G H5157424912OMIM:615071Alazami syndrome.16
HP:0003510HP:0003510Severe short stature0LTBP3 CL E G H40546716ORPHA:969Acromicric dysplasiaHP:0040281 - Very frequent12
HP:0003510HP:0003510Severe short stature0LYSET CL E G H2617520218OMIM:619345DYSOSTOSIS MULTIPLEX, AIN-NAZ TYPE; DMAN
HP:0003510HP:0003510Severe short stature0MAP3K7 CL E G H68856859ORPHA:3238Cardiospondylocarpofacial syndromeHP:0040281 - Very frequent11
HP:0003510HP:0003510Severe short stature0MBTPS2 CL E G H5136015455ORPHA:2273Ichthyosis follicularis-alopecia-photophobia syndromeHP:0040283 - Occasional22
HP:0003510HP:0003510Severe short stature0MBTPS2 CL E G H5136015455OMIM:301014Osteogenesis imperfecta, type XIX.22
HP:0003510HP:0003510Severe short stature0MESP2 CL E G H14587329659OMIM:277300Spondylocostal dysostosis, autosomal recessive 145
HP:0003510HP:0003510Severe short stature0NDUFB11 CL E G H5453920372ORPHA:2556Microphthalmia with linear skin defects syndromeHP:0040282 - Frequent3
HP:0003510HP:0003510Severe short stature0NEPRO CL E G H2587124496OMIM:618853ANAUXETIC DYSPLASIA 3; ANXD3
HP:0003510HP:0003510Severe short stature0NIN CL E G H5119914906OMIM:614851Seckel syndrome 7.55
HP:0003510HP:0003510Severe short stature0NSMCE2 CL E G H28605326513OMIM:617253Seckel syndrome 102
HP:0003510HP:0003510Severe short stature0OBSL1 CL E G H2336329092OMIM:6129213-M syndrome 2143
HP:0003510HP:0003510Severe short stature0ORC1 CL E G H49988487ORPHA:2554Ear-patella-short stature syndromeHP:0040281 - Very frequent53
HP:0003510HP:0003510Severe short stature0ORC4 CL E G H50008490ORPHA:2554Ear-patella-short stature syndromeHP:0040281 - Very frequent21
HP:0003510HP:0003510Severe short stature0ORC6 CL E G H2359417151ORPHA:2554Ear-patella-short stature syndromeHP:0040281 - Very frequent39
HP:0003510HP:0003510Severe short stature0PCYT1A CL E G H51308754ORPHA:85167Spondylometaphyseal dysplasia-cone-rod dystrophy syndromeHP:0040281 - Very frequent11
HP:0003510HP:0003510Severe short stature0PEX7 CL E G H51918860OMIM:215100Rhizomelic chondrodysplasia punctata, type 1.72
HP:0003510HP:0003510Severe short stature0PIEZO2 CL E G H6389526270ORPHA:2461Marden-Walker syndromeHP:0040281 - Very frequent77
HP:0003510HP:0003510Severe short stature0PIK3R1 CL E G H52958979ORPHA:3163SHORT syndromeHP:0040281 - Very frequent43
HP:0003510HP:0003510Severe short stature0PNPLA6 CL E G H1090816268OMIM:275400Oliver-Mcfarlane syndrome.103
HP:0003510HP:0003510Severe short stature0POLE CL E G H54269177OMIM:618336Intrauterine growth retardation, metaphyseal dysplasia, adrenal hypoplasia congenita, genital anomalies, and immunodeficiency.1129
HP:0003510HP:0003510Severe short stature0PTCD3 CL E G H5503724717OMIM:619057COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 51; COXPD51
HP:0003510HP:0003510Severe short stature0PTDSS1 CL E G H97919587ORPHA:2658Lenz-Majewski hyperostotic dwarfismHP:0040281 - Very frequent6
HP:0003510HP:0003510Severe short stature0PTH1R CL E G H57459608OMIM:156400Metaphyseal chondrodysplasia, Jansen type.HP:0003593 - Infantile onset58
HP:0003510HP:0003510Severe short stature0PYCR1 CL E G H58319721ORPHA:2078Geroderma osteodysplasticaHP:0040281 - Very frequent53
HP:0003510HP:0003510Severe short stature0RMRP CL E G H602310031OMIM:607095Anauxetic dysplasia37
HP:0003510HP:0003510Severe short stature0RNU4ATAC CL E G H10015168334016ORPHA:2636Microcephalic osteodysplastic primordial dwarfism types I and IIIHP:0040281 - Very frequent15
HP:0003510HP:0003510Severe short stature0RPL13 CL E G H613710303OMIM:618728SPONDYLOEPIMETAPHYSEAL DYSPLASIA, ISIDOR-TOUTAIN TYPE; SEMDIST
HP:0003510HP:0003510Severe short stature0RTTN CL E G H2591418654ORPHA:468631Microcephalic cortical malformations-short stature due to RTTN deficiencyHP:0040282 - Frequent113
HP:0003510HP:0003510Severe short stature0SALL4 CL E G H5716715924ORPHA:2307IVIC syndromeHP:0040281 - Very frequent86
HP:0003510HP:0003510Severe short stature0SDHA CL E G H638910680ORPHA:3208Isolated succinate-CoQ reductase deficiencyHP:0040282 - Frequent304
HP:0003510HP:0003510Severe short stature0SDHAF1 CL E G H64409633867ORPHA:3208Isolated succinate-CoQ reductase deficiencyHP:0040282 - Frequent16
HP:0003510HP:0003510Severe short stature0SDHB CL E G H639010681ORPHA:3208Isolated succinate-CoQ reductase deficiencyHP:0040282 - Frequent237
HP:0003510HP:0003510Severe short stature0SDHD CL E G H639210683ORPHA:3208Isolated succinate-CoQ reductase deficiencyHP:0040282 - Frequent129
HP:0003510HP:0003510Severe short stature0SGMS2 CL E G H16692928395OMIM:126550Calvarial doughnut lesions with bone fragilityHP:0040284 - Very rare
HP:0003510HP:0003510Severe short stature0SHOX CL E G H647310853ORPHA:2632Langer mesomelic dysplasiaHP:0040281 - Very frequent66
HP:0003510HP:0003510Severe short stature0SIL1 CL E G H6437424624ORPHA:559Marinesco-Sjögren syndromeHP:0040281 - Very frequent67
HP:0003510HP:0003510Severe short stature0SLC26A2 CL E G H183610994ORPHA:93298Achondrogenesis type 1BHP:0040281 - Very frequent166
HP:0003510HP:0003510Severe short stature0SMAD4 CL E G H40896770ORPHA:2588Myhre syndromeHP:0040281 - Very frequent504
HP:0003510HP:0003510Severe short stature0SMARCA2 CL E G H659511098ORPHA:3051Nicolaides-Baraitser syndromeHP:0040282 - Frequent146
HP:0003510HP:0003510Severe short stature0STAT5B CL E G H677711367OMIM:245590GROWTH HORMONE INSENSITIVITY WITH IMMUNODEFICIENCY12
HP:0003510HP:0003510Severe short stature0TBX6 CL E G H691111605ORPHA:1797Autosomal dominant spondylocostal dysostosisHP:0040281 - Very frequent19
HP:0003510HP:0003510Severe short stature0TBX6 CL E G H691111605OMIM:122600Spondylocostal dysostosis 5.19
HP:0003510HP:0003510Severe short stature0TCTN3 CL E G H2612324519ORPHA:2753Orofaciodigital syndrome type 4HP:0040281 - Very frequent31
HP:0003510HP:0003510Severe short stature0TRIP11 CL E G H932112305ORPHA:93299Achondrogenesis type 1AHP:0040281 - Very frequent133
HP:0003510HP:0003510Severe short stature0TRPV4 CL E G H5934118083OMIM:156530Metatropic dysplasia.214
HP:0003510HP:0003510Severe short stature0TRPV4 CL E G H5934118083ORPHA:2635Metatropic dysplasiaHP:0040281 - Very frequent214
HP:0003510HP:0003510Severe short stature0TRPV4 CL E G H5934118083OMIM:168400Parastremmatic dwarfism.214
HP:0003510HP:0003510Severe short stature0TRPV4 CL E G H5934118083ORPHA:93314Spondylometaphyseal dysplasia, Kozlowski typeHP:0040282 - Frequent214
HP:0003510HP:0003510Severe short stature0WNT5A CL E G H747412784ORPHA:3107Autosomal dominant Robinow syndromeHP:0040282 - Frequent98
HP:0003510HP:0003510Severe short stature0XYLT1 CL E G H6413115516OMIM:615777Desbuquois dysplasia 214
HP:0003510HP:0003510Severe short stature0XYLT1 CL E G H6413115516ORPHA:1425Desbuquois syndromeHP:0040281 - Very frequent14


Genes (101) :ADAMTS2 ADAMTSL2 ALDH18A1 AMER1 ANTXR2 ATP11A B3GALT6 BRF1 CANT1 CDC45 CDC6 CDT1 CENPT CKAP2L COL1A1 COL1A2 COL2A1 COMP COX7B CRIPT CSGALNACT1 CTSA DDRGK1 DHCR24 DLL3 DLX5 DNMT3A DVL1 DVL3 DYM EPRS1 ERCC4 ERCC6 ESCO2 FAM111A FBN1 FGFR1 FGFR3 FLNB FZD2 GH1 GHR GHRHR GLB1 GMNN GORAB HCCS HHAT HSPA9 HSPG2 IDS INPP5K INPPL1 KAT6B KIF11 LARP7 LTBP3 LYSET MAP3K7 MBTPS2 MESP2 NDUFB11 NEPRO NIN NSMCE2 OBSL1 ORC1 ORC4 ORC6 PCYT1A PEX7 PIEZO2 PIK3R1 PNPLA6 POLE PTCD3 PTDSS1 PTH1R PYCR1 RMRP RNU4ATAC RPL13 RTTN SALL4 SDHA SDHAF1 SDHB SDHD SGMS2 SHOX SIL1 SLC26A2 SMAD4 SMARCA2 STAT5B TBX6 TCTN3 TRIP11 TRPV4 WNT5A XYLT1

Diseases (94) :ORPHA:1901 OMIM:219150 ORPHA:2780 ORPHA:2176 OMIM:619851 OMIM:271640 ORPHA:444072 OMIM:251450 ORPHA:1425 ORPHA:2554 OMIM:618702 ORPHA:3255 ORPHA:1899 OMIM:184250 ORPHA:93316 OMIM:132400 ORPHA:2556 OMIM:615789 OMIM:256540 ORPHA:93352 ORPHA:35107 OMIM:277300 OMIM:220600 OMIM:618724 ORPHA:3107 ORPHA:239 OMIM:617951 OMIM:610965 OMIM:133540 OMIM:278800 ORPHA:2319 OMIM:127000 ORPHA:969 OMIM:102370 ORPHA:2645 OMIM:616482 OMIM:112310 OMIM:262400 OMIM:173100 OMIM:262500 ORPHA:633 OMIM:618157 OMIM:230500 OMIM:616835 ORPHA:2078 OMIM:231070 ORPHA:1422 OMIM:600092 OMIM:616854 ORPHA:1865 OMIM:309900 ORPHA:559 ORPHA:2746 ORPHA:3047 ORPHA:2526 OMIM:615071 OMIM:619345 ORPHA:3238 ORPHA:2273 OMIM:301014 OMIM:618853 OMIM:614851 OMIM:617253 OMIM:612921 ORPHA:85167 OMIM:215100 ORPHA:2461 ORPHA:3163 OMIM:275400 OMIM:618336 OMIM:619057 ORPHA:2658 OMIM:156400 OMIM:607095 ORPHA:2636 OMIM:618728 ORPHA:468631 ORPHA:2307 ORPHA:3208 OMIM:126550 ORPHA:2632 ORPHA:93298 ORPHA:2588 ORPHA:3051 OMIM:245590 ORPHA:1797 OMIM:122600 ORPHA:2753 ORPHA:93299 OMIM:156530 ORPHA:2635 OMIM:168400 ORPHA:93314 OMIM:615777
 

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.