Input | HPO ID | HPO term | Distance | Gene | Gene id entrez | HGNC ID | DiseaseId | DiseaseName | Frequency | Onset | HGMD variants | ClinVar variants |
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HPO disease - gene - phenotype typical associations: |
HPO disease - gene - phenotype less frequent non-typical associations: |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ADCY5 CL E G H | 111 | 236 | OMIM:619651 | NEURODEVELOPMENTAL DISORDER WITH HYPERKINETIC MOVEMENTS AND DYSKINESIA; NEDHYD | | | | 25 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | AKT1 CL E G H | 207 | 391 | OMIM:176920 | Proteus syndrome, somatic | . | | | 54 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ALX4 CL E G H | 60529 | 450 | ORPHA:228390 | Frontonasal dysplasia-alopecia-genital anomalies syndrome | HP:0040281 - Very frequent | | | 132 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ANK3 CL E G H | 288 | 494 | ORPHA:356996 | ANK3-related intellectual disability-sleep disturbance syndrome | HP:0040282 - Frequent | | | 176 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ANK3 CL E G H | 288 | 494 | OMIM:615493 | Mental retardation, autosomal recessive 37 | . | | | 176 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ANKRD11 CL E G H | 29123 | 21316 | ORPHA:261250 | 16q24.3 microdeletion syndrome | HP:0040282 - Frequent | | | 102 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | AP1S2 CL E G H | 8905 | 560 | ORPHA:85335 | Fried syndrome | HP:0040281 - Very frequent | | | 13 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | APC CL E G H | 324 | 583 | ORPHA:79665 | Gardner syndrome | HP:0040284 - Very rare | | | 3179 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | APC2 CL E G H | 10297 | 24036 | ORPHA:821 | Sotos syndrome | HP:0040283 - Occasional | | | 1 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ARID1A CL E G H | 8289 | 11110 | ORPHA:1465 | Coffin-Siris syndrome | HP:0040282 - Frequent | | | 88 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ARID1B CL E G H | 57492 | 18040 | ORPHA:1465 | Coffin-Siris syndrome | HP:0040282 - Frequent | | | 219 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ARID2 CL E G H | 196528 | 18037 | ORPHA:1465 | Coffin-Siris syndrome | HP:0040282 - Frequent | | | 25 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ARX CL E G H | 170302 | 18060 | ORPHA:94083 | Partington syndrome | HP:0040282 - Frequent | | | 166 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ASXL3 CL E G H | 80816 | 29357 | ORPHA:352577 | Bainbridge-Ropers syndrome | HP:0040283 - Occasional | | | 49 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CACNG2 CL E G H | 10369 | 1406 | OMIM:614256 | Mental retardation, autosomal dominant 10 | . | | | 5 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CAMKMT CL E G H | 79823 | 26276 | ORPHA:163693 | 2p21 microdeletion syndrome | HP:0040281 - Very frequent | | | 1 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CASK CL E G H | 8573 | 1497 | OMIM:300749 | Mental retardation and microcephaly with pontine and cerebellar hypoplasia | . | | | 118 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CASK CL E G H | 8573 | 1497 | ORPHA:163937 | X-linked intellectual disability, Najm type | HP:0040281 - Very frequent | | | 118 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CC2D2A CL E G H | 57545 | 29253 | ORPHA:1454 | Joubert syndrome with hepatic defect | HP:0040281 - Very frequent | | | 247 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CDH11 CL E G H | 1009 | 1750 | ORPHA:1299 | Branchioskeletogenital syndrome | HP:0040281 - Very frequent | | | 2 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CDK5RAP2 CL E G H | 55755 | 18672 | OMIM:604804 | Microcephaly 3, primary, autosomal recessive | . | | | 181 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CENPJ CL E G H | 55835 | 17272 | OMIM:608393 | Microcephaly, primary autosomal recessive, 6 | . | | | 161 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CHRNA7 CL E G H | 1139 | 1960 | OMIM:612001 | Chromosome 15q13.3 microdeletion syndrome | | | | 52 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CLCN4 CL E G H | 1183 | 2022 | ORPHA:485350 | CLCN4-related X-linked intellectual disability syndrome | HP:0040282 - Frequent | | | 45 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CNTNAP2 CL E G H | 26047 | 13830 | ORPHA:163681 | CNTNAP2-related developmental and epileptic encephalopathy | | | | 518 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | COG1 CL E G H | 9382 | 6545 | ORPHA:263508 | COG1-CDG | HP:0040283 - Occasional | | | 52 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | COG5 CL E G H | 10466 | 14857 | ORPHA:263487 | COG5-CDG | HP:0040283 - Occasional | | | 79 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | COL1A2 CL E G H | 1278 | 2198 | ORPHA:230851 | Cardiac-valvular Ehlers-Danlos syndrome | HP:0040283 - Occasional | | | 243 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | COQ4 CL E G H | 51117 | 19693 | OMIM:616276 | Coenzyme Q10 deficiency, primary, 7 | | | | 24 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | COQ8A CL E G H | 56997 | 16812 | ORPHA:139485 | Autosomal recessive ataxia due to ubiquinone deficiency | HP:0040282 - Frequent | | | 136 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CPLX1 CL E G H | 10815 | 2309 | ORPHA:352582 | Familial infantile myoclonic epilepsy | HP:0040283 - Occasional | | | 1 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CUL4B CL E G H | 8450 | 2555 | ORPHA:85293 | X-linked intellectual disability, Cabezas type | HP:0040281 - Very frequent | | | 38 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CWC27 CL E G H | 10283 | 10664 | ORPHA:166035 | Brachydactyly-short stature-retinitis pigmentosa syndrome | HP:0040283 - Occasional | | | 4 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | CWF19L1 CL E G H | 55280 | 25613 | ORPHA:453521 | Autosomal recessive cerebellar ataxia due to CWF19L1 deficiency | HP:0040282 - Frequent | | | 9 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | DCHS1 CL E G H | 8642 | 13681 | ORPHA:314679 | Cerebrofacioarticular syndrome | HP:0040282 - Frequent | | | 27 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | DMXL2 CL E G H | 23312 | 2938 | OMIM:616113 | Polyendocrine-Polyneuropathy syndrome | . | | | 3 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | DMXL2 CL E G H | 23312 | 2938 | ORPHA:453533 | Polyendocrine-polyneuropathy syndrome | HP:0040282 - Frequent | | | 3 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | DNMT3A CL E G H | 1788 | 2978 | ORPHA:404443 | Tatton-Brown-Rahman syndrome | HP:0040282 - Frequent | | | 44 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | DPAGT1 CL E G H | 1798 | 2995 | ORPHA:86309 | DPAGT1-CDG | HP:0040282 - Frequent | | | 38 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | DPF2 CL E G H | 5977 | 9964 | ORPHA:1465 | Coffin-Siris syndrome | HP:0040282 - Frequent | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | EBP CL E G H | 10682 | 3133 | OMIM:302960 | Chondrodysplasia punctata 2, X-linked dominant | . | | | 51 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | EGF CL E G H | 1950 | 3229 | OMIM:611718 | HYPOMAGNESEMIA 4, RENAL; HOMG4 | | | | 73 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ENTPD1 CL E G H | 953 | 3363 | OMIM:615683 | Spastic paraplegia 64, autosomal recessive | . | | | 3 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | EXT2 CL E G H | 2132 | 3513 | ORPHA:466926 | Seizures-scoliosis-macrocephaly syndrome | HP:0040282 - Frequent | | | 102 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | FAT4 CL E G H | 79633 | 23109 | ORPHA:314679 | Cerebrofacioarticular syndrome | HP:0040282 - Frequent | | | 114 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | FBLN1 CL E G H | 2192 | 3600 | ORPHA:404451 | FBLN1-related developmental delay-central nervous system anomaly-syndactyly syndrome | HP:0040282 - Frequent | | | 12 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | FGFR2 CL E G H | 2263 | 3689 | ORPHA:794 | Saethre-Chotzen syndrome | HP:0040283 - Occasional | | | 175 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | FGFR2 CL E G H | 2263 | 3689 | OMIM:101400 | Saethre-Chotzen syndrome | . | | | 175 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | FGFR3 CL E G H | 2261 | 3690 | ORPHA:794 | Saethre-Chotzen syndrome | HP:0040283 - Occasional | | | 145 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | FMR1 CL E G H | 2332 | 3775 | OMIM:300624 | Fragile X mental retardation syndrome | HP:0040282 - Frequent | | | 30 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | FMR1 CL E G H | 2332 | 3775 | ORPHA:908 | Fragile X syndrome | HP:0040281 - Very frequent | | | 30 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | FOXP1 CL E G H | 27086 | 3823 | ORPHA:391372 | Intellectual disability-severe speech delay-mild dysmorphism syndrome | HP:0040282 - Frequent | | | 184 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | FTSJ1 CL E G H | 24140 | 13254 | OMIM:309549 | Mental retardation, X-linked 9 | | | | 13 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | GLUD1 CL E G H | 2746 | 4335 | ORPHA:35878 | Hyperinsulinism-hyperammonemia syndrome | HP:0040282 - Frequent | | | 56 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | GRIA3 CL E G H | 2892 | 4573 | ORPHA:364028 | X-linked intellectual disability due to GRIA3 mutations | HP:0040282 - Frequent | | | 30 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | GRIN1 CL E G H | 2902 | 4584 | ORPHA:208447 | Bilateral generalized polymicrogyria | HP:0040283 - Occasional | | | 108 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | GRIN2A CL E G H | 2903 | 4585 | ORPHA:289266 | Early-onset epileptic encephalopathy and intellectual disability due to GRIN2A mutation | HP:0040283 - Occasional | | | 434 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | GTF2E2 CL E G H | 2961 | 4651 | OMIM:616943 | Trichothiodystrophy 6, nonphotosensitive | . | | | 2 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | HMGCL CL E G H | 3155 | 5005 | ORPHA:20 | 3-hydroxy-3-methylglutaric aciduria | HP:0040283 - Occasional | | | 35 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | HNRNPK CL E G H | 3190 | 5044 | ORPHA:352665 | Neurodevelopmental disorder-craniofacial dysmorphism-cardiac defect-skeletal anomalies syndrome due to 9q21.3 microdeletion | HP:0040282 - Frequent | | | 8 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | HNRNPK CL E G H | 3190 | 5044 | ORPHA:453504 | Neurodevelopmental disorder-craniofacial dysmorphism-cardiac defect-skeletal anomalies syndrome due to a point mutation | HP:0040282 - Frequent | | | 8 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | HPRT1 CL E G H | 3251 | 5157 | ORPHA:510 | Lesch-Nyhan syndrome | HP:0040281 - Very frequent | | | 76 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | HYCC1 CL E G H | 84668 | 24587 | ORPHA:85163 | Hypomyelination-congenital cataract syndrome | HP:0040281 - Very frequent | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | IL1RAPL1 CL E G H | 11141 | 5996 | OMIM:300143 | Mental retardation, X-linked 21 | | | | 42 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | INPP5E CL E G H | 56623 | 21474 | ORPHA:1454 | Joubert syndrome with hepatic defect | HP:0040281 - Very frequent | | | 111 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | INPP5E CL E G H | 56623 | 21474 | OMIM:610156 | Mental retardation, truncal obesity, retinal dystrophy, and micropenis syndrome | . | | | 111 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | INPP5E CL E G H | 56623 | 21474 | ORPHA:75858 | MORM syndrome | HP:0040282 - Frequent | | | 111 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | KANSL1 CL E G H | 284058 | 24565 | ORPHA:363958 | 17q21.31 microdeletion syndrome | HP:0040282 - Frequent | | | 283 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | KANSL1 CL E G H | 284058 | 24565 | ORPHA:363965 | Koolen-De Vries syndrome due to a point mutation | HP:0040282 - Frequent | | | 283 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | KDM5B CL E G H | 10765 | 18039 | OMIM:618109 | Mental retardation, autosomal recessive 65 | . | | | 2 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | KIF5A CL E G H | 3798 | 6323 | ORPHA:100991 | Autosomal dominant spastic paraplegia type 10 | HP:0040283 - Occasional | | | 93 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | KLF13 CL E G H | 51621 | 13672 | OMIM:612001 | Chromosome 15q13.3 microdeletion syndrome | | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | L1CAM CL E G H | 3897 | 6470 | ORPHA:306617 | X-linked complicated spastic paraplegia type 1 | HP:0040282 - Frequent | | | 134 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | LAMA1 CL E G H | 284217 | 6481 | ORPHA:370022 | Ataxia-intellectual disability-oculomotor apraxia-cerebellar cysts syndrome | HP:0040281 - Very frequent | | | 35 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | MAB21L2 CL E G H | 10586 | 6758 | OMIM:615877 | Microphthalmia/coloboma and skeletal dysplasia syndrome | HP:0040283 - Occasional | | | 5 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | MAGEL2 CL E G H | 54551 | 6814 | ORPHA:98754 | Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15 | HP:0040284 - Very rare | | | 63 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | MAGEL2 CL E G H | 54551 | 6814 | ORPHA:177901 | Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1 | HP:0040282 - Frequent | | | 63 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | MAGEL2 CL E G H | 54551 | 6814 | ORPHA:177904 | Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2 | HP:0040283 - Occasional | | | 63 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | MAN1B1 CL E G H | 11253 | 6823 | ORPHA:397941 | MAN1B1-CDG | HP:0040283 - Occasional | | | 93 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | MAN1B1 CL E G H | 11253 | 6823 | OMIM:614202 | Rafiq syndrome | | | | 93 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | MECP2 CL E G H | 4204 | 6990 | ORPHA:3077 | X-linked intellectual disability-psychosis-macroorchidism syndrome | HP:0040282 - Frequent | | | 950 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | MED12 CL E G H | 9968 | 11957 | ORPHA:93932 | FG syndrome type 1 | HP:0040282 - Frequent | | | 228 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | MED13L CL E G H | 23389 | 22962 | ORPHA:369891 | Developmental delay-facial dysmorphism syndrome due to MED13L deficiency | HP:0040282 - Frequent | | | 74 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | MED13L CL E G H | 23389 | 22962 | OMIM:616789 | Mental retardation and distinctive facial features with or without cardiac defects | | | | 74 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | MED25 CL E G H | 81857 | 28845 | ORPHA:464738 | Basel-Vanagaite-Smirin-Yosef syndrome | HP:0040283 - Occasional | | | 43 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NCAPD2 CL E G H | 9918 | 24305 | OMIM:617983 | Microcephaly 21, primary, autosomal recessive | . | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NCAPH CL E G H | 23397 | 1112 | OMIM:617985 | Microcephaly 23, primary, autosomal recessive | . | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NDN CL E G H | 4692 | 7675 | ORPHA:98754 | Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15 | HP:0040284 - Very rare | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NDN CL E G H | 4692 | 7675 | ORPHA:177901 | Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1 | HP:0040282 - Frequent | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NDN CL E G H | 4692 | 7675 | ORPHA:177904 | Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2 | HP:0040283 - Occasional | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NDUFAF5 CL E G H | 79133 | 15899 | OMIM:618238 | Mitochondrial complex I deficiency, nuclear type 16 | | | | 34 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NFIX CL E G H | 4784 | 7788 | ORPHA:447980 | 19p13.3 microduplication syndrome | HP:0040282 - Frequent | | | 40 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NFIX CL E G H | 4784 | 7788 | ORPHA:420179 | Malan overgrowth syndrome | HP:0040282 - Frequent | | | 40 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NFIX CL E G H | 4784 | 7788 | OMIM:602535 | Marshall-Smith syndrome | | | | 40 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NHS CL E G H | 4810 | 7820 | OMIM:302350 | Nance-Horan syndrome | | | | 88 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NSD1 CL E G H | 64324 | 14234 | ORPHA:821 | Sotos syndrome | HP:0040283 - Occasional | | | 544 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | NSUN2 CL E G H | 54888 | 25994 | OMIM:611091 | Mental retardation, autosomal recessive 5 | | | | 84 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | OCA2 CL E G H | 4948 | 8101 | ORPHA:98754 | Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15 | HP:0040284 - Very rare | | | 121 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | OCA2 CL E G H | 4948 | 8101 | ORPHA:177901 | Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1 | HP:0040282 - Frequent | | | 121 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | OCA2 CL E G H | 4948 | 8101 | ORPHA:177904 | Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2 | HP:0040283 - Occasional | | | 121 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | OPHN1 CL E G H | 4983 | 8148 | ORPHA:137831 | X-linked intellectual disability-cerebellar hypoplasia syndrome | HP:0040282 - Frequent | | | 55 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PAX1 CL E G H | 5075 | 8615 | OMIM:615560 | Otofaciocervical syndrome 2 | | | | 3 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PCDH19 CL E G H | 57526 | 14270 | ORPHA:101039 | Female restricted epilepsy with intellectual disability | HP:0040283 - Occasional | | | 225 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PDE2A CL E G H | 5138 | 8777 | OMIM:619150 | INTELLECTUAL DEVELOPMENTAL DISORDER WITH PAROXYSMAL DYSKINESIA OR SEIZURES; IDDPADS | | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PGAP1 CL E G H | 80055 | 25712 | OMIM:615802 | MENTAL RETARDATION, AUTOSOMAL RECESSIVE 42; MRT42 | | | | 20 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PGAP2 CL E G H | 27315 | 17893 | ORPHA:247262 | Hyperphosphatasia-intellectual disability syndrome | HP:0040283 - Occasional | | | 8 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PGAP3 CL E G H | 93210 | 23719 | ORPHA:247262 | Hyperphosphatasia-intellectual disability syndrome | HP:0040283 - Occasional | | | 20 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PGM3 CL E G H | 5238 | 8907 | ORPHA:443811 | PGM3-CDG | HP:0040282 - Frequent | | | 15 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PIGL CL E G H | 9487 | 8966 | ORPHA:247262 | Hyperphosphatasia-intellectual disability syndrome | HP:0040283 - Occasional | | | 36 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PIGO CL E G H | 84720 | 23215 | ORPHA:247262 | Hyperphosphatasia-intellectual disability syndrome | HP:0040283 - Occasional | | | 84 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PIGV CL E G H | 55650 | 26031 | ORPHA:247262 | Hyperphosphatasia-intellectual disability syndrome | HP:0040283 - Occasional | | | 57 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PIGW CL E G H | 284098 | 23213 | ORPHA:247262 | Hyperphosphatasia-intellectual disability syndrome | HP:0040283 - Occasional | | | 6 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PIGY CL E G H | 84992 | 28213 | ORPHA:247262 | Hyperphosphatasia-intellectual disability syndrome | HP:0040283 - Occasional | | | 2 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PLP1 CL E G H | 5354 | 9086 | ORPHA:280234 | Null syndrome | HP:0040283 - Occasional | | | 60 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PLP1 CL E G H | 5354 | 9086 | ORPHA:280224 | Pelizaeus-Merzbacher disease, transitional form | HP:0040282 - Frequent | | | 60 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | POLR3A CL E G H | 11128 | 30074 | ORPHA:3455 | Wiedemann-Rautenstrauch syndrome | HP:0040282 - Frequent | | | 138 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | POLR3B CL E G H | 55703 | 30348 | OMIM:614381 | Leukodystrophy, hypomyelinating, 8, with or without oligodontia and/or hypogonadotropic hypogonadism | | | | 67 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PPM1B CL E G H | 5495 | 9276 | ORPHA:163693 | 2p21 microdeletion syndrome | HP:0040281 - Very frequent | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PPP2R5D CL E G H | 5528 | 9312 | ORPHA:457279 | Intellectual disability-macrocephaly-hypotonia-behavioral abnormalities syndrome | HP:0040282 - Frequent | | | 10 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PREPL CL E G H | 9581 | 30228 | ORPHA:163693 | 2p21 microdeletion syndrome | HP:0040281 - Very frequent | | | 7 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PRMT7 CL E G H | 54496 | 25557 | ORPHA:464288 | Short stature-brachydactyly-obesity-global developmental delay syndrome | HP:0040283 - Occasional | | | 6 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PRPS1 CL E G H | 5631 | 9462 | ORPHA:1187 | Lethal ataxia with deafness and optic atrophy | HP:0040282 - Frequent | | | 49 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PSPH CL E G H | 5723 | 9577 | ORPHA:79350 | 3-phosphoserine phosphatase deficiency, infantile/juvenile form | HP:0040282 - Frequent | | | 54 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PTDSS1 CL E G H | 9791 | 9587 | OMIM:151050 | Lenz-Majewski hyperostotic dwarfism | . | | | 6 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PTRH2 CL E G H | 51651 | 24265 | ORPHA:456312 | Infantile multisystem neurologic-endocrine-pancreatic disease | HP:0040281 - Very frequent | | | 6 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | PUF60 CL E G H | 22827 | 17042 | ORPHA:508488 | 8q24.3 microdeletion syndrome | HP:0040281 - Very frequent | | | 19 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | RBMX CL E G H | 27316 | 9910 | OMIM:300238 | MENTAL RETARDATION, X-LINKED, SYNDROMIC 11; MRXS11 | | | | 2 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | RDH11 CL E G H | 51109 | 17964 | ORPHA:436245 | Retinitis pigmentosa-juvenile cataract-short stature-intellectual disability syndrome | HP:0040281 - Very frequent | | | 2 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | RNU4ATAC CL E G H | 100151683 | 34016 | ORPHA:353298 | Roifman syndrome | HP:0040282 - Frequent | | | 15 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | RPGRIP1L CL E G H | 23322 | 29168 | ORPHA:1454 | Joubert syndrome with hepatic defect | HP:0040281 - Very frequent | | | 167 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | RSPRY1 CL E G H | 89970 | 29420 | ORPHA:457395 | Progressive spondyloepimetaphyseal dysplasia-short stature-short fourth metatarsals-intellectual disability syndrome | HP:0040283 - Occasional | | | 2 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | RTTN CL E G H | 25914 | 18654 | OMIM:614833 | Microcephaly, short stature, and polymicrogyria with or without seizures | | | | 113 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SARS1 CL E G H | 6301 | 10537 | OMIM:617709 | Neurodevelopmental disorder with microcephaly, ataxia, and seizures | . | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SATB2 CL E G H | 23314 | 21637 | ORPHA:576283 | SATB2-associated syndrome due to a pathogenic variant | HP:0040282 - Frequent | | | 34 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SCN1A CL E G H | 6323 | 10585 | OMIM:607208 | Epileptic encephalopathy, early infantile, 6 (Dravet syndrome) | | | | 1053 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SETBP1 CL E G H | 26040 | 15573 | ORPHA:436151 | Intellectual disability-expressive aphasia-facial dysmorphism syndrome | HP:0040283 - Occasional | | | 143 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SETD2 CL E G H | 29072 | 18420 | ORPHA:821 | Sotos syndrome | HP:0040283 - Occasional | | | 60 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SHANK3 CL E G H | 85358 | 14294 | OMIM:606232 | Phelan-Mcdermid syndrome | . | | | 53 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SHMT2 CL E G H | 6472 | 10852 | OMIM:619121 | NEURODEVELOPMENTAL DISORDER WITH CARDIOMYOPATHY, SPASTICITY, AND BRAIN ABNORMALITIES; NEDCASB | | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SLC16A2 CL E G H | 6567 | 10923 | ORPHA:59 | Allan-Herndon-Dudley syndrome | HP:0040283 - Occasional | | | 57 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SLC35A3 CL E G H | 23443 | 11023 | ORPHA:370943 | Autism spectrum disorder-epilepsy-arthrogryposis syndrome | HP:0040283 - Occasional | | | 2 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SLC3A1 CL E G H | 6519 | 11025 | ORPHA:163693 | 2p21 microdeletion syndrome | HP:0040281 - Very frequent | | | 55 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SLC45A1 CL E G H | 50651 | 17939 | OMIM:617532 | Intellectual developmental disorder with neuropsychiatric features | . | | | 2 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SMARCA4 CL E G H | 6597 | 11100 | ORPHA:1465 | Coffin-Siris syndrome | HP:0040282 - Frequent | | | 617 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SMARCB1 CL E G H | 6598 | 11103 | ORPHA:1465 | Coffin-Siris syndrome | HP:0040282 - Frequent | | | 87 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SMARCC2 CL E G H | 6601 | 11105 | ORPHA:1465 | Coffin-Siris syndrome | HP:0040282 - Frequent | | | 1 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SMARCD1 CL E G H | 6602 | 11106 | ORPHA:1465 | Coffin-Siris syndrome | HP:0040282 - Frequent | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SMARCE1 CL E G H | 6605 | 11109 | ORPHA:1465 | Coffin-Siris syndrome | HP:0040282 - Frequent | | | 47 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SMOC1 CL E G H | 64093 | 20318 | ORPHA:1106 | Microphthalmia with limb anomalies | HP:0040282 - Frequent | | | 15 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SNRPN CL E G H | 6638 | 11164 | ORPHA:98754 | Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15 | HP:0040284 - Very rare | | | 37 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SNRPN CL E G H | 6638 | 11164 | ORPHA:177901 | Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1 | HP:0040282 - Frequent | | | 37 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SNRPN CL E G H | 6638 | 11164 | ORPHA:177904 | Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2 | HP:0040283 - Occasional | | | 37 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SOX11 CL E G H | 6664 | 11191 | ORPHA:1465 | Coffin-Siris syndrome | HP:0040282 - Frequent | | | 14 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SOX4 CL E G H | 6659 | 11200 | ORPHA:1465 | Coffin-Siris syndrome | HP:0040282 - Frequent | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SPATA5 CL E G H | 166378 | 18119 | ORPHA:457351 | Microcephaly-intellectual disability-sensorineural hearing loss-epilepsy-abnormal muscle tone syndrome | HP:0040282 - Frequent | | | 19 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SRCAP CL E G H | 10847 | 16974 | ORPHA:2044 | Floating-Harbor syndrome | HP:0040282 - Frequent | | | 138 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | STAG2 CL E G H | 10735 | 11355 | ORPHA:521258 | Xq25 microduplication syndrome | HP:0040282 - Frequent | | | 1 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SYNGAP1 CL E G H | 8831 | 11497 | OMIM:612621 | Mental retardation, autosomal dominant 5 | | | | 108 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | SYNGAP1 CL E G H | 8831 | 11497 | ORPHA:544254 | SYNGAP1-related developmental and epileptic encephalopathy | HP:0040282 - Frequent | | | 108 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TAF1 CL E G H | 6872 | 11535 | ORPHA:480907 | X-linked intellectual disability-global development delay-facial dysmorphism-sacral caudal remnant syndrome | HP:0040282 - Frequent | | | 21 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TBC1D24 CL E G H | 57465 | 29203 | ORPHA:352582 | Familial infantile myoclonic epilepsy | HP:0040283 - Occasional | | | 271 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TBCD CL E G H | 6904 | 11581 | ORPHA:496641 | Early-onset progressive diffuse brain atrophy-microcephaly-muscle weakness-optic atrophy syndrome | HP:0040283 - Occasional | | | 16 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TCF4 CL E G H | 6925 | 11634 | ORPHA:2896 | Pitt-Hopkins syndrome | HP:0040281 - Very frequent | | | 241 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TGM6 CL E G H | 343641 | 16255 | ORPHA:276193 | Spinocerebellar ataxia type 35 | HP:0040283 - Occasional | | | 58 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | THOC2 CL E G H | 57187 | 19073 | ORPHA:457240 | X-linked intellectual disability-short stature-overweight syndrome | HP:0040282 - Frequent | | | 5 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TMEM67 CL E G H | 91147 | 28396 | OMIM:216360 | Coach syndrome 1 | | | | 166 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TMEM67 CL E G H | 91147 | 28396 | ORPHA:1454 | Joubert syndrome with hepatic defect | HP:0040281 - Very frequent | | | 166 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TMEM70 CL E G H | 54968 | 26050 | ORPHA:1194 | TMEM70-related mitochondrial encephalo-cardio-myopathy | HP:0040281 - Very frequent | | | 63 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TOR1A CL E G H | 1861 | 3098 | OMIM:618947 | ARTHROGRYPOSIS MULTIPLEX CONGENITA 5; AMC5 | | | | 47 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TRNE CL E G H | 4556 | 7479 | ORPHA:2596 | Myopathy and diabetes mellitus | HP:0040283 - Occasional | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TTI2 CL E G H | 80185 | 26262 | OMIM:615541 | Mental retardation, autosomal recessive 39 | | | | 11 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TTI2 CL E G H | 80185 | 26262 | ORPHA:391307 | Severe intellectual disability-short stature-behavioral abnormalities-facial dysmorphism syndrome | HP:0040283 - Occasional | | | 11 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TWIST1 CL E G H | 7291 | 12428 | ORPHA:794 | Saethre-Chotzen syndrome | HP:0040283 - Occasional | | | 18 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | TWIST1 CL E G H | 7291 | 12428 | OMIM:101400 | Saethre-Chotzen syndrome | . | | | 18 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | UBE2A CL E G H | 7319 | 12472 | ORPHA:163956 | X-linked intellectual disability, Nascimento type | HP:0040283 - Occasional | | | 7 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | UROC1 CL E G H | 131669 | 26444 | OMIM:276880 | Urocanase deficiency | | | | 8 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | USP9X CL E G H | 8239 | 12632 | ORPHA:480880 | X-linked female restricted facial dysmorphism-short stature-choanal atresia-intellectual disability | HP:0040281 - Very frequent | | | 27 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | VPS16 CL E G H | 64601 | 14584 | OMIM:619291 | DYSTONIA 30; DYT30 | | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | WARS2 CL E G H | 10352 | 12730 | ORPHA:572798 | WARS2-related combined oxidative phosphorylation defect | HP:0040282 - Frequent | | | 2 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | WDFY3 CL E G H | 23001 | 20751 | OMIM:617520 | Microcephaly 18, primary, autosomal dominant | . | | | 6 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | WDR62 CL E G H | 284403 | 24502 | OMIM:604317 | Microcephaly 2, primary, autosomal recessive, with or without cortical malformations | | | | 224 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | XYLT1 CL E G H | 64131 | 15516 | ORPHA:370930 | XYLT1-CDG | HP:0040282 - Frequent | | | 14 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | YY1 CL E G H | 7528 | 12856 | ORPHA:506358 | Gabriele-de Vries syndrome | HP:0040282 - Frequent | | | 7 | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ZBTB11 CL E G H | 27107 | 16740 | OMIM:618383 | Intellectual developmental disorder, autosomal recessive 69 | | | | | | |
HP:0002342 | HP:0002342 | Intellectual disability, moderate | 0 | ZNF711 CL E G H | 7552 | 13128 | OMIM:300803 | MENTAL RETARDATION, X-LINKED 97; MRX97 | | | | 34 | | |